ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MATK_DALWR (Q6TND0) Maturase K (Intron maturase) 29 4.9
2MATK_DALPU (Q6TND4) Maturase K (Intron maturase) 29 4.9
3FA47B_HUMAN (Q8NA70) Protein FAM47B 28 6.4

>MATK_DALWR (Q6TND0) Maturase K (Intron maturase)|
          Length = 512

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 159 LVVGKVLYVTLST*GSRVSVWEHYPGPVCKPQIVEHSYRMWWGLCISTVQVCL 1
           L++ K  Y  +S      +VW   PG +   Q+ +HS+  +WG   S V++ L
Sbjct: 296 LLMNKWKYYLISLWQCYFNVWSQ-PGTIYINQLSDHSFHFFWGGYFSNVRLNL 347



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>MATK_DALPU (Q6TND4) Maturase K (Intron maturase)|
          Length = 509

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 159 LVVGKVLYVTLST*GSRVSVWEHYPGPVCKPQIVEHSYRMWWGLCISTVQVCL 1
           L++ K  Y  +S      +VW   PG +   Q+ +HS+  +WG   S V++ L
Sbjct: 293 LLMNKWKYYLISLWQCYFNVWSQ-PGTIYINQLSDHSFHFFWGGYFSNVRLNL 344



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>FA47B_HUMAN (Q8NA70) Protein FAM47B|
          Length = 645

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 389 EVQFVKVCYWDDVKPVSPHSIS 324
           EV+F+++ YWD  +  +PHS S
Sbjct: 519 EVEFLRIKYWDRRRRAAPHSYS 540


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,013,227
Number of Sequences: 219361
Number of extensions: 1266233
Number of successful extensions: 2797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2797
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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