>HNF1B_PIG (Q03365) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1) (FPC-binding
           protein) (FPCB)
          Length = 559

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 23  LLHPAHKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYPEE 145
           LL P  K+Q+S+     SGGG+   S+    H L+HH P++
Sbjct: 396 LLSPDGKMQISV-----SGGGLPPVSTLTNIHSLSHHNPQQ 431

>COX1_RHILE (Q08855) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Cytochrome aa3 subunit 1)
          Length = 538

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 29  HPAHKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYP 139
           HP   + ++I+SLHI+G    L + N +T  LN   P
Sbjct: 163 HPGPAVDLAIFSLHIAGASSILGAINFITTILNMRAP 199

>HNF1B_MOUSE (P27889) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein
           LFB3)
          Length = 558

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 20  ALLHPAHKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYPEE 145
           +LL P  K+Q+++     SGGG+   S+    H L+HH P++
Sbjct: 394 SLLSPDSKMQITV-----SGGGLPPVSTLTNIHSLSHHNPQQ 430

>YNG5_SCHPO (O13621) Hypothetical protein C691.05c in chromosome II|
          Length = 668

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 276 IRPLDFA---GIRHWGCFFLGFLLVGEVTSTVHYYTISFSHLVK 154
           +RP  +    G+  WG FF+ F  V E   T H+ T++   L K
Sbjct: 206 LRPYSYIFAIGVALWGAFFIQFWRVQEHKLTNHWSTVNCQSLAK 249

>UTP13_SCHPO (Q9USN3) Probable U3 small nucleolar RNA-associated protein 13 (U3|
           snoRNA-associated protein 13)
          Length = 777

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 134 NGGLDGV*PCYWTGDEYHLR*CGENRWTSVIYVQG 30
           NG  D V  C W GD+ HL  C    +  VI   G
Sbjct: 320 NGSFDEVIDCAWIGDD-HLAVCSNTEFIDVISTDG 353

>PNUT_DROME (P40797) Protein peanut|
          Length = 539

 Score = 23.5 bits (49), Expect(2) = 6.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 65  LHISGGGIHLQSSNKVTHHL 124
           L  SGGG     SNK+TH L
Sbjct: 75  LDTSGGGASNGDSNKLTHDL 94



 Score = 22.7 bits (47), Expect(2) = 6.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 106 QGYTPSKPPLP*RNWPL 156
           Q   P KPPLP R  P+
Sbjct: 101 QAQKPQKPPLPVRQKPM 117

>HNF1B_RAT (P23899) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1)
          Length = 557

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 20  ALLHPAHKL-QMSIYSLHISGGGIHLQSSNKVTHHLNHHYPEE 145
           A L P H L       + +SGGG+   S+    H L+HH P++
Sbjct: 387 ASLDPGHSLLSPDSKMISVSGGGLPPVSTLTNIHSLSHHNPQQ 429

>PSBC_ODOSI (P49472) Photosystem II 44 kDa reaction center protein (P6 protein)|
           (CP43)
          Length = 471

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 261 FAGIRHWGCFFLGFLLVGEVTSTVHYYTISFSHLVKRPI 145
           F  I+H      G    GE+TSTV Y+ +   HL+   +
Sbjct: 84  FILIQHLATLGYGIGPGGEITSTVPYFAVGVIHLISSAV 122

>MOR2_SCHPO (Q9HDV6) Cell polarity protein mor2 (Morphological round protein 2)|
          Length = 2196

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 206  SPTKRNPKKKQPQCLIPAKSNGLMVLAYHWEVNGKFHL 319
            +P   +  K  P CL+   +N L V    +E+ G FHL
Sbjct: 1200 NPNNLSKPKLLPLCLVNLSTNNLSVRLKAFELLGNFHL 1237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,274,841
Number of Sequences: 219361
Number of extensions: 1153743
Number of successful extensions: 2353
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2350
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)