ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CUBN_CANFA (Q9TU53) Cubilin precursor 29 3.6
2WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7... 29 3.6
3GATA_COREF (Q8FPZ0) Glutamyl-tRNA(Gln) amidotransferase subunit ... 28 8.1

>CUBN_CANFA (Q9TU53) Cubilin precursor|
          Length = 3620

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 129  GLPGNF*SKGHINTYMIKGELTWHATTRP 215
            G  G+F S G+ NTY    E  W+ TT P
Sbjct: 1394 GTTGSFSSPGYPNTYPPNKECIWYITTAP 1422



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>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)|
           (Protein kinase with no lysine 4) (Protein kinase,
           lysine-deficient 4)
          Length = 1243

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 212 PCGGMPC*LSFDHVCIDVAFTLEIP 138
           P GG+P  L+  H+C+  AF L IP
Sbjct: 604 PPGGVPSSLAESHLCLPSAFALSIP 628



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>GATA_COREF (Q8FPZ0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 497

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 29  DQINVEYKPTNPKTIFYLGSKLT 97
           +Q++V   PT P T F LG K+T
Sbjct: 412 EQVDVLVSPTTPSTAFKLGDKIT 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,974,781
Number of Sequences: 219361
Number of extensions: 616704
Number of successful extensions: 1261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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