ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on ch... 40 1.2
2gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, com... 40 1.2
3gb|AC118680.7| Mus musculus chromosome 8, clone RP24-381G7, comp... 40 1.2
4gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 38 4.6
5ref|XM_483612.1| Oryza sativa (japonica cultivar-group), mRNA 38 4.6
6gb|U53698.2|DAU53698 Drosophila ananassae alpha-amylase AMY2 (Am... 38 4.6
7gb|AC110882.13| Mus musculus chromosome 18, clone RP23-287A10, c... 38 4.6
8gb|CP000001.1| Bacillus cereus E33L, complete genome 38 4.6
9emb|BX901909.5| Zebrafish DNA sequence from clone CH211-42I14 in... 38 4.6
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
12gb|AC106900.3| Homo sapiens BAC clone RP11-796E10 from 2, comple... 38 4.6
13dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
14dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
15dbj|AK071354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.6
16emb|AL591669.5| Zebrafish DNA sequence from clone BUSM1-163L24 i... 38 4.6
17dbj|AK059291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.6
18gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 38 4.6
19gb|AF012854.1|AF012854 Drosophila ananassae clone pD322 genomic DNA 38 4.6

>emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on chromosome Xq24-25
             Contains a ribosomal protein L3 (RPL3) pseudogene,
             complete sequence
          Length = 137154

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gacagtcaaacctgagcacc 43
             ||||||||||||||||||||
Sbjct: 38734 gacagtcaaacctgagcacc 38753



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>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence
          Length = 164343

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ccaacagatattacacaaag 61
             ||||||||||||||||||||
Sbjct: 34317 ccaacagatattacacaaag 34298



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>gb|AC118680.7| Mus musculus chromosome 8, clone RP24-381G7, complete sequence
          Length = 188031

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    ccaacagatattacacaaag 61
             ||||||||||||||||||||
Sbjct: 45690 ccaacagatattacacaaag 45709



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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 85      taggtacatgtacataaat 103
               |||||||||||||||||||
Sbjct: 1934006 taggtacatgtacataaat 1934024



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>ref|XM_483612.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4511

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 73   ttacaagagcactaggtac 91
            |||||||||||||||||||
Sbjct: 4373 ttacaagagcactaggtac 4355



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>gb|U53698.2|DAU53698 Drosophila ananassae alpha-amylase AMY2 (Amy58), CG14696-like
            protein, and alpha-amylase AMY1 (Amy35) genes, complete
            cds; and CG7891-like protein gene, partial cds
          Length = 13496

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   ctaggtacatgtacataaa 102
            |||||||||||||||||||
Sbjct: 1172 ctaggtacatgtacataaa 1154



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>gb|AC110882.13| Mus musculus chromosome 18, clone RP23-287A10, complete sequence
          Length = 203782

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 19     ctaccgacagtcaaacctgagcaccaa 45
              |||| ||||||||| ||||||||||||
Sbjct: 146511 ctacagacagtcaagcctgagcaccaa 146537



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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 50      tattacacaaaggattaca 68
               |||||||||||||||||||
Sbjct: 1984875 tattacacaaaggattaca 1984857



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>emb|BX901909.5| Zebrafish DNA sequence from clone CH211-42I14 in linkage group 3,
             complete sequence
          Length = 90216

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    agatattacacaaaggatt 65
             |||||||||||||||||||
Sbjct: 49713 agatattacacaaaggatt 49695



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 73       ttacaagagcactaggtac 91
                |||||||||||||||||||
Sbjct: 27270634 ttacaagagcactaggtac 27270652



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 41      accaacagatattacacaa 59
               |||||||||||||||||||
Sbjct: 1653796 accaacagatattacacaa 1653814



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>gb|AC106900.3| Homo sapiens BAC clone RP11-796E10 from 2, complete sequence
          Length = 149495

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     agcaccaacagatattaca 56
              |||||||||||||||||||
Sbjct: 129412 agcaccaacagatattaca 129394



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>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408F06
          Length = 137462

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    accaacagatattacacaa 59
             |||||||||||||||||||
Sbjct: 91027 accaacagatattacacaa 91045



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>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0623F08
          Length = 154540

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    ttacaagagcactaggtac 91
             |||||||||||||||||||
Sbjct: 93837 ttacaagagcactaggtac 93855



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>dbj|AK071354.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095B09, full
            insert sequence
          Length = 4512

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 73   ttacaagagcactaggtac 91
            |||||||||||||||||||
Sbjct: 4374 ttacaagagcactaggtac 4356



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>emb|AL591669.5| Zebrafish DNA sequence from clone BUSM1-163L24 in linkage group 3,
             complete sequence
          Length = 107839

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    agatattacacaaaggatt 65
             |||||||||||||||||||
Sbjct: 79448 agatattacacaaaggatt 79430



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>dbj|AK059291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E03, full
            insert sequence
          Length = 1704

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 73   ttacaagagcactaggtac 91
            |||||||||||||||||||
Sbjct: 1599 ttacaagagcactaggtac 1581



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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 50      tattacacaaaggattaca 68
               |||||||||||||||||||
Sbjct: 2044287 tattacacaaaggattaca 2044269



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>gb|AF012854.1|AF012854 Drosophila ananassae clone pD322 genomic DNA
          Length = 5163

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   ctaggtacatgtacataaa 102
            |||||||||||||||||||
Sbjct: 1172 ctaggtacatgtacataaa 1154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 867,537
Number of Sequences: 3902068
Number of extensions: 867537
Number of successful extensions: 59428
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59315
Number of HSP's gapped (non-prelim): 113
length of query: 103
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 82
effective length of database: 17,151,101,840
effective search space: 1406390350880
effective search space used: 1406390350880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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