Clone Name | rbastl27f11 |
---|---|
Clone Library Name | barley_pub |
>emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on chromosome Xq24-25 Contains a ribosomal protein L3 (RPL3) pseudogene, complete sequence Length = 137154 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gacagtcaaacctgagcacc 43 |||||||||||||||||||| Sbjct: 38734 gacagtcaaacctgagcacc 38753
>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ccaacagatattacacaaag 61 |||||||||||||||||||| Sbjct: 34317 ccaacagatattacacaaag 34298
>gb|AC118680.7| Mus musculus chromosome 8, clone RP24-381G7, complete sequence Length = 188031 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ccaacagatattacacaaag 61 |||||||||||||||||||| Sbjct: 45690 ccaacagatattacacaaag 45709
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 taggtacatgtacataaat 103 ||||||||||||||||||| Sbjct: 1934006 taggtacatgtacataaat 1934024
>ref|XM_483612.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4511 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 ttacaagagcactaggtac 91 ||||||||||||||||||| Sbjct: 4373 ttacaagagcactaggtac 4355
>gb|U53698.2|DAU53698 Drosophila ananassae alpha-amylase AMY2 (Amy58), CG14696-like protein, and alpha-amylase AMY1 (Amy35) genes, complete cds; and CG7891-like protein gene, partial cds Length = 13496 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 ctaggtacatgtacataaa 102 ||||||||||||||||||| Sbjct: 1172 ctaggtacatgtacataaa 1154
>gb|AC110882.13| Mus musculus chromosome 18, clone RP23-287A10, complete sequence Length = 203782 Score = 38.2 bits (19), Expect = 4.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 19 ctaccgacagtcaaacctgagcaccaa 45 |||| ||||||||| |||||||||||| Sbjct: 146511 ctacagacagtcaagcctgagcaccaa 146537
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 tattacacaaaggattaca 68 ||||||||||||||||||| Sbjct: 1984875 tattacacaaaggattaca 1984857
>emb|BX901909.5| Zebrafish DNA sequence from clone CH211-42I14 in linkage group 3, complete sequence Length = 90216 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 agatattacacaaaggatt 65 ||||||||||||||||||| Sbjct: 49713 agatattacacaaaggatt 49695
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ttacaagagcactaggtac 91 ||||||||||||||||||| Sbjct: 27270634 ttacaagagcactaggtac 27270652
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 accaacagatattacacaa 59 ||||||||||||||||||| Sbjct: 1653796 accaacagatattacacaa 1653814
>gb|AC106900.3| Homo sapiens BAC clone RP11-796E10 from 2, complete sequence Length = 149495 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 agcaccaacagatattaca 56 ||||||||||||||||||| Sbjct: 129412 agcaccaacagatattaca 129394
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 accaacagatattacacaa 59 ||||||||||||||||||| Sbjct: 91027 accaacagatattacacaa 91045
>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0623F08 Length = 154540 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ttacaagagcactaggtac 91 ||||||||||||||||||| Sbjct: 93837 ttacaagagcactaggtac 93855
>dbj|AK071354.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095B09, full insert sequence Length = 4512 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 ttacaagagcactaggtac 91 ||||||||||||||||||| Sbjct: 4374 ttacaagagcactaggtac 4356
>emb|AL591669.5| Zebrafish DNA sequence from clone BUSM1-163L24 in linkage group 3, complete sequence Length = 107839 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 agatattacacaaaggatt 65 ||||||||||||||||||| Sbjct: 79448 agatattacacaaaggatt 79430
>dbj|AK059291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E03, full insert sequence Length = 1704 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 ttacaagagcactaggtac 91 ||||||||||||||||||| Sbjct: 1599 ttacaagagcactaggtac 1581
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 tattacacaaaggattaca 68 ||||||||||||||||||| Sbjct: 2044287 tattacacaaaggattaca 2044269
>gb|AF012854.1|AF012854 Drosophila ananassae clone pD322 genomic DNA Length = 5163 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 ctaggtacatgtacataaa 102 ||||||||||||||||||| Sbjct: 1172 ctaggtacatgtacataaa 1154 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 867,537 Number of Sequences: 3902068 Number of extensions: 867537 Number of successful extensions: 59428 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59315 Number of HSP's gapped (non-prelim): 113 length of query: 103 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 82 effective length of database: 17,151,101,840 effective search space: 1406390350880 effective search space used: 1406390350880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)