ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27f07 |
|---|---|
| Clone Library Name | barley_pub |
>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD| delta) Length = 868 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/37 (64%), Positives = 30/37 (81%), Gaps = 1/37 (2%) Frame = -2 Query: 385 KVEPDGKIVPLPDQECFPDVGGKIWGAPT-SLPDSLT 278 +V+ DGK+ PLPD E FPDVGGKI GA + +LPD+LT Sbjct: 831 QVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLT 867
>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta| 1) (PLDbeta) Length = 967 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = -2 Query: 385 KVEPDGKIVPLPDQECFPDVGGKIWGAPTSLPDSLTM 275 +V+ GK+ PLP E FPDVGG I G ++ ++LT+ Sbjct: 931 EVDRKGKVRPLPGSETFPDVGGNIVGTFIAIQENLTI 967
>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta| 2) (PLDdelta1) Length = 915 Score = 37.4 bits (85), Expect = 0.009 Identities = 16/37 (43%), Positives = 26/37 (70%) Frame = -2 Query: 385 KVEPDGKIVPLPDQECFPDVGGKIWGAPTSLPDSLTM 275 +V+ GK+ PLP E FPDVGG + G+ ++ ++LT+ Sbjct: 879 EVDRKGKVRPLPGSEEFPDVGGNVVGSFLAIQENLTI 915
>PLDG2_ARATH (Q9T051) Phospholipase D gamma 2 (EC 3.1.4.4) (AtPLDgamma2) (PLD| gamma 2) Length = 824 Score = 37.0 bits (84), Expect = 0.011 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = -2 Query: 385 KVEPDGKIVPLPDQECFPDVGGKIWGAPTSLPDSLTM 275 +V+ GK+ LP E FPD+GGKI G+ +L ++LT+ Sbjct: 788 QVDKTGKVSSLPGCETFPDLGGKIIGSFLTLQENLTI 824
>PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD| gamma 1) (Choline phosphatase) (Lipophosphodiesterase II) (Lecithinase D) Length = 858 Score = 36.6 bits (83), Expect = 0.015 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = -2 Query: 385 KVEPDGKIVPLPDQECFPDVGGKIWGAPTSLPDSLTM 275 +V+ GK+ LP E FPD+GGKI G+ +L ++LT+ Sbjct: 822 QVDRTGKVSSLPGCETFPDLGGKIIGSFLALQENLTI 858
>PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD| gamma 3) Length = 866 Score = 35.0 bits (79), Expect = 0.044 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = -2 Query: 385 KVEPDGKIVPLPDQECFPDVGGKIWGAPTSLPDSLTM 275 +V+ GK+ LP E FPD+GGKI G+ + ++LT+ Sbjct: 830 QVDRTGKVSSLPGYETFPDLGGKIIGSFLVVEENLTI 866
>RL33_AQUAE (O67756) 50S ribosomal protein L33| Length = 50 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 52 VSCTDCKKKNLTKAHNSTTHREQPVLSLYATQCVIHKL 165 ++CT+CK++N T N H E+ L Y C H + Sbjct: 8 LACTECKRRNYTTTKNKQKHPERLELRKYCKWCRKHTI 45
>A2AP_BOVIN (P28800) Alpha-2-antiplasmin precursor (Alpha-2-plasmin inhibitor)| (Alpha-2-PI) (Alpha-2-AP) Length = 492 Score = 31.6 bits (70), Expect = 0.48 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Frame = +2 Query: 23 MSKLSIDPVLSHVQT-VKKKILQRRTTLQHTVNSPCFPYTPHNV*STNYGAGYHHPLARQ 199 +S LS+ LSH+ + + LQR + H + PC P+ + + G G AR Sbjct: 109 LSPLSVALALSHLALGAQNQTLQRLKEVLHADSGPCLPHLLSRL-CQDLGPGAFRLAARM 167 Query: 200 DIQRGFT-----GEQNNQLGL*KEVSTVTSHRQRIRKRGRGAPNLATDVGEAFLVGQRDD 364 +Q+GF EQ+ QL K +S + + R E FL DD Sbjct: 168 YLQKGFPIKEDFLEQSEQLFGAKPMSLTGMKGEDLANINRWVKEATEGKIEDFLSDLPDD 227 Query: 365 LTIRL 379 + L Sbjct: 228 TVLLL 232
>HDAC4_HUMAN (P56524) Histone deacetylase 4 (HD4)| Length = 1084 Score = 31.2 bits (69), Expect = 0.63 Identities = 22/61 (36%), Positives = 27/61 (44%) Frame = +1 Query: 160 KLRCRLSSSVGKTRHSERFYRRAK*PAWTLKRSQYRDVTSSANQEARSGRPKSCHRRRGS 339 KLR RL V + R S RR P T + + DVT SA A P S + GS Sbjct: 251 KLRSRLKQKVAE-RRSSPLLRRKDGPVVTALKKRPLDVTDSACSSAPGSGPSSPNNSSGS 309 Query: 340 I 342 + Sbjct: 310 V 310
>MMHB_AGKHA (Q9YI92) Mamushigin beta chain precursor| Length = 146 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%) Frame = -1 Query: 209 SECLVLPTDDDNLHRNLWIT--HCVAYRE------STGCSRCVVELCAF 87 +EC+V TD L N WIT C+A + S CSR +C F Sbjct: 96 NECMVEWTDGTRLSHNAWITESECIAAKTTDNQWLSRPCSRTYNVVCKF 144
>UL17_VZVD (P09292) Gene 43 protein| Length = 676 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/53 (26%), Positives = 29/53 (54%) Frame = -2 Query: 268 HGTDFFSESKLVILLSCKTSLNVLSCQRMMITCTVICGSHIVWRIGKARAVHG 110 +GT +F++ + V+LL CK + + C + + I H+V +G++ +G Sbjct: 150 NGTRYFADGQRVLLL-CKQLIAYIRCTPRLASSIKIYAEHMVAAMGESHTSNG 201
>APEB_PSEPK (Q88M44) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)| Length = 429 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -2 Query: 259 DFFSESKLVILLSCKTSLNVLSCQRMMITCTVICGSH 149 DF + ++L LLSC L L TC ++C H Sbjct: 228 DFIAGARLDNLLSCYAGLQALLAADSDETCVLVCNDH 264
>2ABG_RAT (P97888) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B gamma isoform (PP2A, subunit B, B-gamma isoform) (PP2A, subunit B, B55-gamma isoform) (PP2A, subunit B, PR55-gamma isoform) (PP2A, subunit B, R2-gamma isoform) (PP2A, s Length = 447 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +1 Query: 130 SLYATQCVIHKLRCRL--SSSVGKTRHSERFYRRAK*PAWTLKRSQYRDVTSSANQEARS 303 SLY + C+ K C S SV T F+R R+ RDVT A++E S Sbjct: 331 SLYESDCIFDKFECAWNGSDSVIMTGAYNNFFR-------MFDRNTKRDVTLEASRE--S 381 Query: 304 GRPKSCHRRRGSILG 348 +P++ + R +G Sbjct: 382 SKPRAVLKPRRVCVG 396
>2ABG_MOUSE (Q8BG02) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B gamma isoform (PP2A, subunit B, B-gamma isoform) (PP2A, subunit B, B55-gamma isoform) (PP2A, subunit B, PR55-gamma isoform) (PP2A, subunit B, R2-gamma isoform) Length = 447 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +1 Query: 130 SLYATQCVIHKLRCRL--SSSVGKTRHSERFYRRAK*PAWTLKRSQYRDVTSSANQEARS 303 SLY + C+ K C S SV T F+R R+ RDVT A++E S Sbjct: 331 SLYESDCIFDKFECAWNGSDSVIMTGAYNNFFR-------MFDRNTKRDVTLEASRE--S 381 Query: 304 GRPKSCHRRRGSILG 348 +P++ + R +G Sbjct: 382 SKPRAVLKPRRVCVG 396
>YAOH_SCHPO (Q10096) Hypothetical zinc finger protein C11D3.17 in chromosome I| Length = 585 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +1 Query: 43 PCPVSCTDCKKKNLTKAHNSTTHREQPVL 129 PCP CK+K+L K H H ++ V+ Sbjct: 60 PCPYCEIKCKRKDLLKRHIQRFHNDKSVI 88
>DDX50_HUMAN (Q9BQ39) ATP-dependent RNA helicase DDX50 (EC 3.6.1.-) (DEAD box| protein 50) (Nucleolar protein Gu2) (Gu-beta) Length = 737 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +1 Query: 235 PAWTLKRSQYRDVTSSANQEARSGRPKSCHRRRGSILGRAAGRSYHQA 378 PA + +Y D +S+N RSG R G GR+ GRS Q+ Sbjct: 658 PAKLPEIEEYYDGNTSSNSRQRSGWSSGRSGRSGRSGGRSGGRSGRQS 705
>2ABG_RABIT (P50410) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B gamma isoform (PP2A, subunit B, B-gamma isoform) (PP2A, subunit B, B55-gamma isoform) (PP2A, subunit B, PR55-gamma isoform) (PP2A, subunit B, R2-gamma isoform) Length = 447 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +1 Query: 130 SLYATQCVIHKLRCRL--SSSVGKTRHSERFYRRAK*PAWTLKRSQYRDVTSSANQEARS 303 SLY C+ K C S SV T F+R R+ RDVT A++E S Sbjct: 331 SLYENDCIFDKFECAWNGSDSVIMTGAYNNFFR-------MFDRNTKRDVTLEASRE--S 381 Query: 304 GRPKSCHRRRGSILG 348 +P++ + R +G Sbjct: 382 SKPRAVLKPRRVCVG 396
>2ABG_MACFA (Q95LP0) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B gamma isoform (PP2A, subunit B, B-gamma isoform) (PP2A, subunit B, B55-gamma isoform) (PP2A, subunit B, PR55-gamma isoform) (PP2A, subunit B, R2-gamma isoform) Length = 447 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +1 Query: 130 SLYATQCVIHKLRCRL--SSSVGKTRHSERFYRRAK*PAWTLKRSQYRDVTSSANQEARS 303 SLY C+ K C S SV T F+R R+ RDVT A++E S Sbjct: 331 SLYENDCIFDKFECAWNGSDSVIMTGAYNNFFR-------MFDRNTKRDVTLEASRE--S 381 Query: 304 GRPKSCHRRRGSILG 348 +P++ + R +G Sbjct: 382 SKPRAVLKPRRVCVG 396
>2ABG_HUMAN (Q9Y2T4) Serine/threonine-protein phosphatase 2A 55 kDa regulatory| subunit B gamma isoform (PP2A, subunit B, B-gamma isoform) (PP2A, subunit B, B55-gamma isoform) (PP2A, subunit B, PR55-gamma isoform) (PP2A, subunit B, R2-gamma isoform) (IMYPN Length = 447 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +1 Query: 130 SLYATQCVIHKLRCRL--SSSVGKTRHSERFYRRAK*PAWTLKRSQYRDVTSSANQEARS 303 SLY C+ K C S SV T F+R R+ RDVT A++E S Sbjct: 331 SLYENDCIFDKFECAWNGSDSVIMTGAYNNFFR-------MFDRNTKRDVTLEASRE--S 381 Query: 304 GRPKSCHRRRGSILG 348 +P++ + R +G Sbjct: 382 SKPRAVLKPRRVCVG 396
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +3 Query: 222 ESKITSLDSEKKSVP*RHIVSESGSEVGAPQILPPTSGKHSWSGSGTILPSGSTF 386 E K+ + KK RH+V+E+G+ P I PT+ G+ + +G + Sbjct: 90 EEKVKDTEEAKKLAQ-RHLVAETGTAEKMPNISRPTAPPSGKGGNFPVQQAGGNY 143
>ADEC_BORBU (O50821) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)| Length = 548 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +1 Query: 49 PVSCTDCKKKNLTKAHNSTTHREQPVLSLYATQCVIHK 162 P++ +C KK+++ ST ++ PV+ + Q + HK Sbjct: 344 PINNFNCSKKSISDFKFSTKNKMIPVIKCISNQIITHK 381
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +3 Query: 222 ESKITSLDSEKKSVP*RHIVSESGSEVGAPQILPPTSGKHSWSGSGTILPSGSTF 386 E K+ + KK RH+V+E+G+ P I PT+ G+ + +G + Sbjct: 90 EEKVKDTEEAKKLAQ-RHLVAETGTAEKMPNISRPTAPPSGKGGNFPVQQAGGNY 143
>YQ37_CAEEL (Q09458) Hypothetical protein C09F5.7| Length = 395 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -2 Query: 370 GKIVPLPDQECFPDVGGKIWGAPTSLPDSLTM*RHG 263 GK PL D+ F + G +W P P L M HG Sbjct: 179 GKSTPL-DRNIFKENGEPVWVVPDRKPGELVMNEHG 213
>JAG1B_BRARE (Q90Y54) Jagged-1b precursor (Jagged1b) (Jagged3)| Length = 1213 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -2 Query: 205 NVLSCQRMMITCTVICGSHIVWRIGKARAVHGVL*SCAPL 86 N+ CQ I CT++ RIGKAR SC P+ Sbjct: 878 NICQCQNGRIHCTMMWCGPKSCRIGKARGGCPASQSCVPI 917
>BACC_BACLI (O68008) Bacitracin synthetase 3 (BA3) [Includes: ATP-dependent| isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent D-phenylalanine adenylase (D-PheA) (D-phenylalanine activase); ATP-dependent histidine adenylase (HisA) (Histidine Length = 6359 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 250 KRSQYRDVTSSANQEARSGRPKSCHRRRGSILGRAAGRSYHQAL 381 +R YR++ ANQ AR R K RGSI A RS+ + Sbjct: 483 QRMTYRELNEKANQTARLLREKGI--GRGSIAAIIADRSFEMII 524
>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent| isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent cysteine adenylase (CysA) (Cysteine activase); ATP-dependent leucine adenylase (LeuA) (Leucine activase); ATP-depe Length = 5255 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 250 KRSQYRDVTSSANQEARSGRPKSCHRRRGSILGRAAGRSYHQAL 381 +R YR++ ANQ AR R K RGSI A RS+ + Sbjct: 4690 QRMTYRELNEKANQTARLLREKGI--GRGSIAAIIADRSFEMII 4731 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 250 KRSQYRDVTSSANQEARSGRPKSCHRRRGSILGRAAGRSYHQAL 381 +R YR++ ANQ AR R K RGSI A RS+ + Sbjct: 61 QRMTYRELNEKANQTARLLREKGI--GRGSIAAIIADRSFEMII 102
>DDX50_MOUSE (Q99MJ9) ATP-dependent RNA helicase DDX50 (EC 3.6.1.-) (DEAD box| protein 50) (Nucleolar protein Gu2) (Gu-beta) Length = 734 Score = 27.3 bits (59), Expect = 9.1 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 13/93 (13%) Frame = +1 Query: 139 ATQCVIHKLR-CRLSSSVG-----KTRHSERFYRRAK*PAWTL-------KRSQYRDVTS 279 ++ V H R C L ++G T SER W L + +Y D + Sbjct: 610 SSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNT 669 Query: 280 SANQEARSGRPKSCHRRRGSILGRAAGRSYHQA 378 S+N RSG R G GR+ GRS Q+ Sbjct: 670 SSNPRQRSGWSGGRSGRSGRSGGRSGGRSGRQS 702
>SPEE_SYNPX (Q7U3L0) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 280 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 382 VEPDGKIVPLPDQECFPDVGGKIW 311 VE DG++V L QE P +GG +W Sbjct: 103 VEIDGRVVEL-SQEHLPGIGGAVW 125
>YIL7_YEAST (P40476) Hypothetical 34.7 kDa protein in RHO3-HIS5 intergenic| region Length = 318 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +3 Query: 225 SKITSLDSEKKSVP*RHIVSESGSEVGAPQILPPTSGKHSWSGSGTILPSGSTF 386 S ITS+ S S+P ++S S S P I PP+ + + +P+G+ F Sbjct: 28 STITSVASSSSSLP---LLSNSTSSSIIPSITPPSRNGNPYILDSGDMPNGTVF 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,342,430 Number of Sequences: 219361 Number of extensions: 1272058 Number of successful extensions: 3682 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3575 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3681 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
