ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE009123.1| Agrobacterium tumefaciens str. C58 circular chrom... 44 0.33
2gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 44 0.33
3gb|AC102176.8| Mus musculus chromosome 15, clone RP23-480E14, co... 42 1.3
4gb|AC006467.13| Drosophila melanogaster clone BACR03L08, complet... 42 1.3
5emb|CR378665.1| Photobacterium profundum SS9; segment 3/12 42 1.3
6gb|AC097366.6| Genomic sequence for Mus musculus, clone RP23-81M... 42 1.3
7gb|AC006415.11|AC006415 Drosophila melanogaster, chromosome 2L, ... 42 1.3
8gb|AE003782.4| Drosophila melanogaster chromosome 2L, section 81... 42 1.3
9gb|BC101324.2| Homo sapiens similar to CTAGE6, mRNA (cDNA clone ... 40 5.2
10gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 40 5.2
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.2
12gb|AE014309.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 5.2
13gb|AF271358.1| Oryza sativa (indica cultivar-group) phospholipas... 40 5.2
14gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complet... 40 5.2
15gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, comple... 40 5.2
16gb|AF338232.1| Homo sapiens CTAGE-4 protein mRNA, complete cds 40 5.2
17gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complet... 40 5.2
18emb|AL645507.7| Human DNA sequence from clone RP11-476C24 on chr... 40 5.2
19gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 5.2
20emb|AL356376.9| Human DNA sequence from clone RP11-155N20 on chr... 40 5.2
21gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 5.2
22gb|AC158790.5| Mus musculus chromosome 1, clone RP23-223M9, comp... 40 5.2
23gb|BC043153.2| Homo sapiens CTAGE family, member 6, mRNA (cDNA c... 40 5.2
24gb|AC103619.12| Mus musculus chromosome 1, clone RP24-217I23, co... 40 5.2
25ref|NM_001008747.1| Homo sapiens similar to CTAGE6 (LOC441294), ... 40 5.2
26ref|XM_935638.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 5.2
27ref|XM_499498.2| PREDICTED: Homo sapiens CTAGE family, member 6 ... 40 5.2
28ref|XM_936769.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 5.2
29ref|XM_496933.2| PREDICTED: Homo sapiens similar to CTAGE family... 40 5.2
30ref|XM_498461.2| PREDICTED: Homo sapiens CTAGE family, member 6 ... 40 5.2
31ref|XM_928907.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 5.2
32gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromo... 40 5.2
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
34dbj|AK069703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
35emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on ch... 40 5.2
36gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complet... 40 5.2

>gb|AE009123.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 149
            of 256 of the complete sequence
          Length = 11363

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 346  ggtcgggcagcgggacgatctt 367
            ||||||||||||||||||||||
Sbjct: 7770 ggtcgggcagcgggacgatctt 7749



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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 346     ggtcgggcagcgggacgatctt 367
               ||||||||||||||||||||||
Sbjct: 1653727 ggtcgggcagcgggacgatctt 1653706



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>gb|AC102176.8| Mus musculus chromosome 15, clone RP23-480E14, complete sequence
          Length = 181577

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 194    agacaagacattcagagaggt 214
              |||||||||||||||||||||
Sbjct: 119980 agacaagacattcagagaggt 119960



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>gb|AC006467.13| Drosophila melanogaster clone BACR03L08, complete sequence
          Length = 170327

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     taaaaatgtcaaaactatcaa 38
              |||||||||||||||||||||
Sbjct: 153527 taaaaatgtcaaaactatcaa 153507



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>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12
          Length = 347213

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     ttcgcagtaaaaatgtcaaaa 31
              |||||||||||||||||||||
Sbjct: 159038 ttcgcagtaaaaatgtcaaaa 159018



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>gb|AC097366.6| Genomic sequence for Mus musculus, clone RP23-81M23, from chromosome
             17, complete sequence
          Length = 183518

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    aaaatgtcaaaactatcaatt 40
             |||||||||||||||||||||
Sbjct: 32518 aaaatgtcaaaactatcaatt 32538



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>gb|AC006415.11|AC006415 Drosophila melanogaster, chromosome 2L, region 40B-40C, BAC clone
            BACR22A22, complete sequence
          Length = 162345

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   taaaaatgtcaaaactatcaa 38
            |||||||||||||||||||||
Sbjct: 4648 taaaaatgtcaaaactatcaa 4628



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>gb|AE003782.4| Drosophila melanogaster chromosome 2L, section 81 of 83 of the complete
             sequence
          Length = 298116

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    taaaaatgtcaaaactatcaa 38
             |||||||||||||||||||||
Sbjct: 44062 taaaaatgtcaaaactatcaa 44042



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>gb|BC101324.2| Homo sapiens similar to CTAGE6, mRNA (cDNA clone IMAGE:40024903),
           partial cds
          Length = 1638

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 caggttatcatcatccgttg 190
           ||||||||||||||||||||
Sbjct: 229 caggttatcatcatccgttg 210



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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 317   cttgccaccgacgtcggggaagca 340
             |||||| |||||||||||||||||
Sbjct: 47309 cttgccgccgacgtcggggaagca 47332



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 317      cttgccaccgacgtcggggaagca 340
                |||||| |||||||||||||||||
Sbjct: 35046408 cttgccgccgacgtcggggaagca 35046431



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>gb|AE014309.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 6 of
              11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      acgtgcacagttcgcagtaa 20
              ||||||||||||||||||||
Sbjct: 220205 acgtgcacagttcgcagtaa 220224



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>gb|AF271358.1| Oryza sativa (indica cultivar-group) phospholipase D (RPLD5) gene,
            complete cds
          Length = 6300

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 317  cttgccaccgacgtcggggaagca 340
            |||||| |||||||||||||||||
Sbjct: 5727 cttgccgccgacgtcggggaagca 5704



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>gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complete sequence
          Length = 169723

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   caggttatcatcatccgttg 190
             ||||||||||||||||||||
Sbjct: 55976 caggttatcatcatccgttg 55995



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>gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, complete sequence
          Length = 200123

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    caggttatcatcatccgttg 190
              ||||||||||||||||||||
Sbjct: 122015 caggttatcatcatccgttg 121996



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>gb|AF338232.1| Homo sapiens CTAGE-4 protein mRNA, complete cds
          Length = 1967

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 caggttatcatcatccgttg 190
           ||||||||||||||||||||
Sbjct: 257 caggttatcatcatccgttg 238



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>gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complete sequence
          Length = 130030

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    caggttatcatcatccgttg 190
              ||||||||||||||||||||
Sbjct: 119987 caggttatcatcatccgttg 120006



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   caggttatcatcatccgttg 190
             ||||||||||||||||||||
Sbjct: 35997 caggttatcatcatccgttg 35978



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>emb|AL645507.7| Human DNA sequence from clone RP11-476C24 on chromosome 1 Contains part
             of the gene for a novel protein, complete sequence
          Length = 102743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   caagacattcagagaggttt 216
             ||||||||||||||||||||
Sbjct: 24165 caagacattcagagaggttt 24184



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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 5       gcacagttcgcagtaaaaatgtca 28
               |||||||| |||||||||||||||
Sbjct: 2450030 gcacagtttgcagtaaaaatgtca 2450053



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>emb|AL356376.9| Human DNA sequence from clone RP11-155N20 on chromosome 13, complete
              sequence
          Length = 143683

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      acgtgcacagttcgcagtaa 20
              ||||||||||||||||||||
Sbjct: 116742 acgtgcacagttcgcagtaa 116761



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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 180     atcatccgttggcaagacaagacattca 207
               ||||||||||||||| | ||||||||||
Sbjct: 4925116 atcatccgttggcaaaagaagacattca 4925089



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>gb|AC158790.5| Mus musculus chromosome 1, clone RP23-223M9, complete sequence
          Length = 178205

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    acattcagagaggttttaca 220
              ||||||||||||||||||||
Sbjct: 131622 acattcagagaggttttaca 131641



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>gb|BC043153.2| Homo sapiens CTAGE family, member 6, mRNA (cDNA clone MGC:41943
           IMAGE:5296763), complete cds
          Length = 2620

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 caggttatcatcatccgttg 190
           ||||||||||||||||||||
Sbjct: 916 caggttatcatcatccgttg 897



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>gb|AC103619.12| Mus musculus chromosome 1, clone RP24-217I23, complete sequence
          Length = 152116

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  acattcagagaggttttaca 220
            ||||||||||||||||||||
Sbjct: 3943 acattcagagaggttttaca 3962



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>ref|NM_001008747.1| Homo sapiens similar to CTAGE6 (LOC441294), mRNA
          Length = 2355

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 caggttatcatcatccgttg 190
           ||||||||||||||||||||
Sbjct: 900 caggttatcatcatccgttg 881



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>ref|XM_935638.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC641899), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  caggttatcatcatccgttg 190
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_499498.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  caggttatcatcatccgttg 190
            ||||||||||||||||||||
Sbjct: 1487 caggttatcatcatccgttg 1468



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>ref|XM_936769.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC647707), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  caggttatcatcatccgttg 190
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_496933.2| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC441296), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  caggttatcatcatccgttg 190
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_498461.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  caggttatcatcatccgttg 190
            ||||||||||||||||||||
Sbjct: 1487 caggttatcatcatccgttg 1468



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>ref|XM_928907.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC643854), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  caggttatcatcatccgttg 190
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromosome 7, complete
              sequence
          Length = 162801

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    caggttatcatcatccgttg 190
              ||||||||||||||||||||
Sbjct: 114015 caggttatcatcatccgttg 114034



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 317      cttgccaccgacgtcggggaagca 340
                |||||| |||||||||||||||||
Sbjct: 35136480 cttgccgccgacgtcggggaagca 35136503



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>dbj|AK069703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027C22, full
            insert sequence
          Length = 2733

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 317  cttgccaccgacgtcggggaagca 340
            |||||| |||||||||||||||||
Sbjct: 2634 cttgccgccgacgtcggggaagca 2611



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>emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on chromosome 6 Contains part
             of the gene for a 7 transmembrane receptor (rhodopsin
             family) (olfactory receptor like) protein, the gene for
             WUGSC:H_DJ0988G15.3 protein, part of the PDNP3
             (phosphodiesterase I/nucleotide pyrophosphatase 3) gene,
             ESTs, STSs and GSSs, complete sequence
          Length = 59130

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   caggttatcatcatccgttg 190
             ||||||||||||||||||||
Sbjct: 31234 caggttatcatcatccgttg 31253



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>gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complete sequence
          Length = 140915

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   caggttatcatcatccgttg 190
             ||||||||||||||||||||
Sbjct: 92861 caggttatcatcatccgttg 92842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,451,436
Number of Sequences: 3902068
Number of extensions: 2451436
Number of successful extensions: 56326
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56246
Number of HSP's gapped (non-prelim): 80
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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