Clone Information

BLAST Search Result

Clone Name	rbastl27f04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ...	38	0.007
2	GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ...	37	0.015
3	GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ...	36	0.026
4	GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ...	35	0.058
5	POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	34	0.076
6	GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	34	0.076
7	DNAJ_CLOAB (P30725) Chaperone protein dnaJ	33	0.13
8	GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; ...	33	0.13
9	AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-int...	28	0.22
10	GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; ...	33	0.22
11	POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	0.29
12	GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	32	0.29
13	AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-int...	27	0.36
14	GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; ...	32	0.38
15	HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p...	26	0.47
16	GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-...	31	0.64
17	GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-...	31	0.64
18	CP3AS_BOVIN (P79102) Cytochrome P450 3A28 (EC 1.14.14.1) (CYPIII...	31	0.84
19	POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	31	0.84
20	GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	31	0.84
21	GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp...	31	0.84
22	GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15...	30	1.1
23	GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15...	30	1.1
24	GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15...	30	1.1
25	GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosp...	30	1.1
26	POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	1.1
27	CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (...	25	1.3
28	CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)...	25	1.3
29	CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)...	25	1.3
30	MTH3_DROME (Q9V818) Probable G-protein coupled receptor Mth-like...	30	1.9
31	MTH4_DROME (Q9V817) Probable G-protein coupled receptor Mth-like...	30	1.9
32	POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	1.9
33	GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; ...	29	2.4
34	GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; ...	29	2.4
35	POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	2.4
36	GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	2.4
37	BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog	25	2.9
38	POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	3.2
39	SUT1_YEAST (P53032) Sterol uptake protein 1	29	3.2
40	GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	3.2
41	DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-depen...	29	3.2
42	DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-depen...	29	3.2
43	POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	4.2
44	ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein ...	28	4.2
45	POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	4.2
46	ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein ...	28	4.2
47	BIK1_YEAST (P11709) Nuclear fusion protein BIK1	28	4.2
48	L_VSVJO (P16379) Large structural protein (L protein) (Transcrip...	28	4.2
49	GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	4.2
50	POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	5.5
51	GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	5.5
52	GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	5.5
53	GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	5.5
54	POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	5.5
55	POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	5.5
56	GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	5.5
57	L_VSVJH (P13615) Large structural protein (L protein) (Transcrip...	28	5.5
58	CP3AJ_CAPAE (P79152) Cytochrome P450 3A19 (EC 1.14.14.1) (CYPIII...	28	5.5
59	ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7	25	7.0
60	POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	7.1
61	GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	7.1
62	POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	7.1
63	POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	7.1
64	EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2...	28	7.1
65	GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	7.1
66	M610_ARATH (P93316) Hypothetical mitochondrial protein AtMg00610...	28	7.1
67	GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	7.1
68	GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	7.1
69	GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	7.1
70	CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)...	24	7.8
71	ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13	27	9.3
72	POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	27	9.3
73	ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6	27	9.3
74	POLG_HCVED (O39929) Genome polyprotein [Contains: Core protein p...	27	9.3
75	POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	27	9.3
76	GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	27	9.3
77	RPOT2_ARATH (Q9LFV6) DNA-directed RNA polymerase 2, chloroplast/...	27	9.3
78	NU5M_TRYBB (P04540) NADH-ubiquinone oxidoreductase chain 5 (EC 1...	27	9.3
79	POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	27	9.3
80	GRP2_NICSY (P27484) Glycine-rich protein 2	23	9.8

>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 363 AKIVVE--RGTTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           AK++ E  +    QN+ Q GG   + R  P+C  CG  GH++ QC
Sbjct: 369 AKVMAEMMQNLQSQNMVQQGGGRGRPRPPPKCYNCGKFGHMQRQC 413

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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -2

Query: 363 AKIVVERGTTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRGWE-SFFR*RGVYHF 187
           AK++VE  +  QN+ Q G   K  R   +C  CG  GH++ +C    +   F+   + H 
Sbjct: 363 AKLMVEMMSNGQNMVQVGPQKKGPRGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHM 422

Query: 186 *KECRD 169
            K+C++
Sbjct: 423 AKDCKN 428

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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 363 AKIVVERGTTPQN---VQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           AK++ E   T QN   VQQ  G  K+QR   RC  CG  GH++ QC
Sbjct: 369 AKVMAEMMQTMQNQNMVQQ--GGPKRQRPPLRCYNCGKFGHMQRQC 412

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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 34.7 bits (78), Expect = 0.058
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 363 AKIVVE--RGTTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           AK++ E  +    QN+ Q GG   + R   +C  CG  GH++ QC
Sbjct: 373 AKVMAEMMQNMQSQNMMQQGGQRGRPRPPVKCYNCGKFGHMQRQC 417

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>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1436

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T P N+    G  + QRK  +C  CG  GHI   C
Sbjct: 372 TNPANIMMQRGNFRNQRKTVKCFNCGKEGHIAKNC 406

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>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 501

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T P N+    G  + QRK  +C  CG  GHI   C
Sbjct: 372 TNPANIMMQRGNFRNQRKTVKCFNCGKEGHIAKNC 406

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>DNAJ_CLOAB (P30725) Chaperone protein dnaJ|
          Length = 374

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPR-CDKCGLTGHIRTQ 238
           T  +N +  GG   K+   P+ CDKCG TG IR Q
Sbjct: 145 TRSENCETCGGTGAKKGTSPKTCDKCGGTGTIRVQ 179

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>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -2

Query: 369 SSAKIVVERGTTPQ--NVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRG 226
           +  ++V  +G+ P   N ++ G   ++ R+  +C+KCG  GH+  +C +G
Sbjct: 363 TKVQVVQSKGSGPVCFNCKKPGHLARQCREVKKCNKCGKPGHLAAKCWQG 412

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>AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-interacting RING|
           finger protein 2)
          Length = 344

 Score = 28.5 bits (62), Expect(2) = 0.22
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 288 KEPRCDKCGLTGHIRTQCGRGWE 220
           K  +C KC   GH R+QC   W+
Sbjct: 97  KAIQCSKCDEVGHYRSQCPHKWK 119



 Score = 23.1 bits (48), Expect(2) = 0.22
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCP 320
           C NC  +GH    CP
Sbjct: 63  CNNCSQRGHLKKDCP 77

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>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 369 SSAKIVVERGTTPQ--NVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRG 226
           +  ++V  +G+ P   N ++ G   ++ R   +C+KCG  GH+  +C +G
Sbjct: 363 TKVQVVQSKGSGPVCFNCKKPGHLARQCRDVKKCNKCGKPGHLAAKCWQG 412

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>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T P  +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNPATIMMQRGNFRNQRKNVKCFNCGKEGHIARNC 404

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>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 503

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T P  +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNPATIMMQRGNFRNQRKNVKCFNCGKEGHIARNC 404

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>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING|
           finger protein 1)
          Length = 360

 Score = 27.3 bits (59), Expect(2) = 0.36
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRGWESFF 211
           C  C   GH ++QC   W+  F
Sbjct: 114 CTNCNANGHYKSQCPHKWKKVF 135



 Score = 23.5 bits (49), Expect(2) = 0.36
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCP 320
           C NC  +GH    CP
Sbjct: 76  CNNCSQRGHLKRNCP 90

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>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 369 SSAKIVVERGTTPQ--NVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRG 226
           +  ++V  +G  P   N ++ G   ++ R   +C+KCG  GH+  +C +G
Sbjct: 363 TKVQVVQSKGPGPVCFNCKRPGHLARQCRDVKKCNKCGKPGHLAAKCWQG 412

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>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 25.8 bits (55), Expect(2) = 0.47
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANGGGKQ 299
           C  C  +GH S  CP++ GG +
Sbjct: 99  CYKCGQEGHLSRDCPSSQGGSR 120



 Score = 25.0 bits (53), Expect(2) = 1.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRGWESFFR*RG 199
           C KCG  GHI  +C     S+   RG
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRG 249



 Score = 24.6 bits (52), Expect(2) = 1.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANGGGKQEAEEGT 281
           C  C   GH S  CP   GG   A + T
Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSGAGDRT 169



 Score = 24.6 bits (52), Expect(2) = 0.47
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 309 GANKKQRKEPRCDKCGLTGHIRTQCGRG 226
           GA      +  C KCG  GHI   C  G
Sbjct: 131 GAQGGYSGDRTCYKCGDAGHISRDCPNG 158



 Score = 24.6 bits (52), Expect(2) = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCP 320
           C+NC  +GH + +CP
Sbjct: 18  CRNCGKEGHYARECP 32



 Score = 24.3 bits (51), Expect(2) = 3.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANGG 308
           C  C   GH S +CP  GG
Sbjct: 224 CYKCGKPGHISRECPEAGG 242



 Score = 24.3 bits (51), Expect(2) = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = -2

Query: 279 RCDKCGLTGHIRTQC------GRGWESFFR*RGVYHF*KEC 175
           +C KCG +GH+  +C      G G  + ++     H  +EC
Sbjct: 197 KCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISREC 237



 Score = 23.5 bits (49), Expect(2) = 1.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANG 311
           C  C   GH S +CP+ G
Sbjct: 198 CYKCGESGHMSRECPSAG 215



 Score = 23.1 bits (48), Expect(2) = 3.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQC 235
           C KCG  GHI   C
Sbjct: 255 CYKCGEAGHISRDC 268



 Score = 22.7 bits (47), Expect(2) = 3.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 303 NKKQRKEPRCDKCGLTGHIRTQC 235
           +K   +   C +CG  GH+  +C
Sbjct: 36  SKGDERSTTCFRCGEEGHMSREC 58

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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCP 320
           C NC+G+GH SA+CP
Sbjct: 244 CFNCKGEGHRSAECP 258

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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCP 320
           C NC+G+GH SA+CP
Sbjct: 455 CFNCKGEGHRSAECP 469



 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 370 KFCKNCRGKGHNSAKCP 320
           + C NC+  GHNS  CP
Sbjct: 396 RVCYNCQQPGHNSRDCP 412



 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 370 KFCKNCRGKGHNSAKCP 320
           + C NC+  GHNS  CP
Sbjct: 282 RVCYNCQQPGHNSRDCP 298

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>CP3AS_BOVIN (P79102) Cytochrome P450 3A28 (EC 1.14.14.1) (CYPIIIA28)|
          Length = 507

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 213 RMIPIHGRIES*CVLSSRTYHTWVPSSASCLPPPFAGH-FAELCPFPRQF 359
           RM PI GR+E  C      +   +P   + L P F  H   EL P P +F
Sbjct: 365 RMFPIAGRLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPEEF 414

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>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T P  +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNPATIMIQKGNFRNQRKTVKCFNCGKEGHIAKNC 404

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>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T P  +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNPATIMIQKGNFRNQRKTVKCFNCGKEGHIAKNC 404

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>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 324 VQQT--GGANKKQRKEPRCDKCGLTGHIRTQC 235
           V+QT  GG   +  K P C  CG TGHI+  C
Sbjct: 508 VKQTYGGGKGGQGSKGPVCFSCGKTGHIKRDC 539

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>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDI 166
           C  CG  GH+ +QC R  +  F+ +   HF K+CR +
Sbjct: 383 CYNCGKPGHLSSQC-RAPKVCFKCKQPGHFSKQCRSV 418

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>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDI 166
           C  CG  GH+ +QC R  +  F+ +   HF K+CR +
Sbjct: 383 CYNCGKPGHLSSQC-RAPKVCFKCKQPGHFSKQCRSV 418

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>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDI 166
           C  CG  GH+ +QC R  +  F+ +   HF K+CR +
Sbjct: 383 CYNCGKPGHLSSQC-RAPKVCFKCKQPGHFSKQCRSV 418

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>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 324 VQQT--GGANKKQRKEPRCDKCGLTGHIRTQC 235
           V+QT  GG   +  + P C  CG TGHIR  C
Sbjct: 508 VKQTYGGGKGGQGAEGPVCFSCGKTGHIRKDC 539

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>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1464

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR*R 202
           G   +Q + PR   C KCG TGHI ++C      F R R
Sbjct: 396 GHTARQCRAPRRQGCWKCGKTGHIMSKCPERQAGFLRVR 434

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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 25.0 bits (53), Expect(2) = 1.3
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDIISVS**CC*RLGVSNFLCK 109
           C +CG +GH+   C    ++ +      H  K+C++       CC   G    L +
Sbjct: 54  CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109



 Score = 23.9 bits (50), Expect(2) = 1.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANGG 308
           C  C   GH + +CP  GG
Sbjct: 6   CFKCGRSGHWARECPTGGG 24

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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 25.0 bits (53), Expect(2) = 1.3
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDIISVS**CC*RLGVSNFLCK 109
           C +CG +GH+   C    ++ +      H  K+C++       CC   G    L +
Sbjct: 54  CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109



 Score = 23.9 bits (50), Expect(2) = 1.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANGG 308
           C  C   GH + +CP  GG
Sbjct: 6   CFKCGRSGHWARECPTGGG 24

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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 25.0 bits (53), Expect(2) = 1.3
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDIISVS**CC*RLGVSNFLCK 109
           C +CG +GH+   C    ++ +      H  K+C++       CC   G    L +
Sbjct: 54  CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109



 Score = 23.9 bits (50), Expect(2) = 1.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANGG 308
           C  C   GH + +CP  GG
Sbjct: 6   CFKCGRSGHWARECPTGGG 24

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>MTH3_DROME (Q9V818) Probable G-protein coupled receptor Mth-like 3 precursor|
           (Protein methuselah-like 3)
          Length = 511

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +3

Query: 171 LCILFKNDTHLVIERMIPIHGRIES*CVLSSR-------TYHTWVPSSASCLPPPFAGHF 329
           +CI+     +L +E++  +HG+    C L+S          + W  SS  C+   F G+F
Sbjct: 224 ICIILTISVYLYVEKLRNLHGKCFI-CYLASLFLGYFFLVLNVWKYSSGFCVTAGFLGYF 282

Query: 330 AELCPF 347
           + +  F
Sbjct: 283 SVIAAF 288

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>MTH4_DROME (Q9V817) Probable G-protein coupled receptor Mth-like 4 precursor|
           (Protein methuselah-like 4)
          Length = 480

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +3

Query: 171 LCILFKNDTHLVIERMIPIHGRIES*CVLSSR-------TYHTWVPSSASCLPPPFAGHF 329
           +CI+     +L +E++  +HG+    C L+S          + W  SS  C+   F G+F
Sbjct: 221 ICIILTISVYLYVEKLRNLHGKCFI-CYLASLFLGYFFLVLNVWKYSSGFCVTAGFLGYF 279

Query: 330 AELCPF 347
           + +  F
Sbjct: 280 SVMAAF 285

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>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 208
           G + +Q + PR   C KCG TGH+  +C      F R
Sbjct: 398 GHSARQCRAPRRQGCWKCGKTGHVMAKCPERQAGFLR 434

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>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQC 235
           G + KQ + PR   C KCG TGH+  +C
Sbjct: 401 GHSAKQCRAPRRQGCWKCGKTGHVMAKC 428

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>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 449

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 327 NVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRG 226
           N ++ G   ++ ++  RC+ CG  GH+   C +G
Sbjct: 379 NCKKPGHLARQCKEAKRCNNCGKPGHLAANCWQG 412

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>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1433

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 324 VQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           V    G  K QRK  +C  CG  GHI   C
Sbjct: 374 VMMQKGNFKNQRKTVKCFNCGKEGHIAKNC 403

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>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 498

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 324 VQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           V    G  K QRK  +C  CG  GHI   C
Sbjct: 374 VMMQKGNFKNQRKTVKCFNCGKEGHIAKNC 403

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>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog|
          Length = 179

 Score = 25.0 bits (53), Expect(2) = 2.9
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
 Frame = -2

Query: 291 RKEPRCDKCGLTGHIRTQC--------GR--GWESFFR*RGVYHF*KECRD-IISVS**C 145
           R+   C KCG  GHI   C        GR  G  S         +  + RD  + V    
Sbjct: 80  RQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYS 139

Query: 144 C*RLGVSNFLCKLLCSSQLISVC 76
           C ++G  +F C+     QL   C
Sbjct: 140 CGKIGHRSFECQQASDGQLCYKC 162



 Score = 22.7 bits (47), Expect(2) = 2.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 370 KFCKNCRGKGHNSAKCPANGGGKQEAE 290
           K C  C   GH    CP++   +Q AE
Sbjct: 58  KTCYACGTAGHLVRDCPSSPNPRQGAE 84

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>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNC 404

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>SUT1_YEAST (P53032) Sterol uptake protein 1|
          Length = 299

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -2

Query: 354 VVERGT---TPQNVQQTGGANKKQRKEPRCDKCGL 259
           ++ R T   T  +   T   +K+QR  P CDKC L
Sbjct: 131 IISRSTSNSTTSSATSTSSISKRQRSGPSCDKCRL 165

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>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNC 404

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>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
          Length = 795

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 236 AAVDGNHSFDDEVCIIFKKNAETLSQCHDNAVN 138
           A +DG+H     V   FK+N E++  C+DN +N
Sbjct: 618 AHIDGDHLTLLNVYHAFKQNHESVQWCYDNFIN 650

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>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
           (ATP-dependent RNA helicase #46)
          Length = 795

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 236 AAVDGNHSFDDEVCIIFKKNAETLSQCHDNAVN 138
           A +DG+H     V   FK+N E++  C+DN +N
Sbjct: 618 AHIDGDHLTLLNVYHAFKQNHESVQWCYDNFIN 650

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>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 208
           G + +Q + PR   C KCG  GHI T C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMTNCPDRQAGFLR 433

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>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 333  PQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
            P  V  T G+  K+     C  CG++GH    C
Sbjct: 1104 PNVVANTSGSGPKKNGNVSCYNCGVSGHYAQDC 1136

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>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 208
           G + +Q + PR   C KCG  GHI T C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMTNCPDRQAGFLR 433

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>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 333 PQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           P  V  T G+  K+     C  CG++GH    C
Sbjct: 835 PNVVANTSGSGPKKNGNVSCYNCGVSGHYAQDC 867

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>BIK1_YEAST (P11709) Nuclear fusion protein BIK1|
          Length = 440

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 370 KFCKNCRGKGHNSAKCPANGGGKQE 296
           ++C++C   GHN+A+CP +    Q+
Sbjct: 414 QWCEHCDTMGHNTAECPHHNPDNQQ 438

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>L_VSVJO (P16379) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 339  TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRGWESFFR*RG 199
            T P  ++  G  +KK+R    C+  GLT +I   C +G    F  RG
Sbjct: 1102 TVPHPLEMHGPPSKKERPCQLCNSSGLT-YISVHCPKGIIDVFNRRG 1147

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>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQC 235
           G   +Q + PR   C KCG TGHI ++C
Sbjct: 396 GHTARQCRAPRRQGCWKCGKTGHIMSKC 423

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>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 208
           G + +Q + PR   C KCG  GHI  +C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKAGHIMAKCPERQAGFLR 433

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>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQC 235
           G + +Q + PR   C KCG TGH+  +C
Sbjct: 398 GHSARQCRAPRRQGCWKCGKTGHVMAKC 425

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>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNC 404

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>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSTTIMMQRGNFRNQRKIVKCFNCGKEGHIARNC 404

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>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNC 404

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>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSTTIMMQRGNFRNQRKIVKCFNCGKEGHIARNC 404

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>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNC 404

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>L_VSVJH (P13615) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 339  TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRGWESFFR*RG 199
            T P  ++  G  +KK+     C+  GLT +I   C +G    F  RG
Sbjct: 1102 TVPHPLEMHGSPSKKENPCQLCNSSGLT-YISVHCPKGITDVFNRRG 1147

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>CP3AJ_CAPAE (P79152) Cytochrome P450 3A19 (EC 1.14.14.1) (CYPIIIA19) (Fragment)|
          Length = 218

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 213 RMIPIHGRIES*CVLSSRTYHTWVPSSASCLPPPFAGH-FAELCPFPRQF 359
           RM PI GR+E  C      +   +P   + + P F  H   E  P P +F
Sbjct: 76  RMFPIAGRLERLCKKDVEIHGVSIPKGTTVMVPLFVLHNNPEFWPEPEEF 125

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>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 25.4 bits (54), Expect(2) = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCP 320
           C+NC  +GH S  CP
Sbjct: 242 CRNCDKRGHLSKNCP 256



 Score = 20.8 bits (42), Expect(2) = 7.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 291 RKEPRCDKCGLTGHIRTQC 235
           RK  RC  C   GH+   C
Sbjct: 259 RKVRRCFLCSRRGHLLYSC 277

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>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1440

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 373 TNSATIMMQRGNFRNQRKIIKCFNCGKEGHIAKNC 407

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>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQC 235
           G + +Q + PR   C KCG  GHI T C
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMTNC 424

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>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 208
           G + +Q + PR   C KCG +GH+   C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKSGHVMANCPERQAGFLR 433

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>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQC 235
           G + KQ + PR   C KCG +GHI   C
Sbjct: 397 GHSAKQCRAPRRQGCWKCGKSGHIMANC 424

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>EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)|
           (Exo-1,3-beta-glucanase)
          Length = 429

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 215 SFDDEVCIIFKKNAETLSQCHDNAVNDW 132
           + D+ + ++ ++  ETL++ H N V +W
Sbjct: 290 TIDEHISVVCEQGKETLTEAHWNVVGEW 317

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>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 506

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 373 TNSATIMMQRGNFRNQRKIIKCFNCGKEGHIAKNC 407

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>M610_ARATH (P93316) Hypothetical mitochondrial protein AtMg00610 (ORF161)|
          Length = 161

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/71 (23%), Positives = 28/71 (39%)
 Frame = -1

Query: 232 PWMGIILSMTRCVSFLKRMQRHYLSVMIMLLTIGGIKLFVQTIM*FSVDKCMHAYEGSLI 53
           PW    +    CV F+   +R     M+  +    + LFV   +  +  K     EG + 
Sbjct: 18  PWQLAAIFSGSCVLFISLEKRTLTGYMLTFILYSVLALFVSVWLSSAAGKAGIPIEGMVF 77

Query: 52  CWYLILRICIL 20
             +LI  IC +
Sbjct: 78  LLFLIGGICFI 88

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>GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 518

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRD 169
           G + +Q   PR   C KCG +GH+   C      F    G+ H+ K+ R+
Sbjct: 395 GHSARQWSAPRRQGCWKCGKSGHVMANCPDRQAGFL---GIGHWGKKARN 441

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>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQC 235
           G + KQ + PR   C KCG +GHI   C
Sbjct: 397 GHSAKQCRAPRRQGCWKCGKSGHIMANC 424

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>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQC 235
           G + +Q + PR   C KCG  GHI T C
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMTNC 424

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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 23.9 bits (50), Expect(2) = 7.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANGG 308
           C  C   GH + +CP  GG
Sbjct: 6   CFKCGRSGHWARECPTGGG 24



 Score = 22.3 bits (46), Expect(2) = 7.8
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCG-RGWESFFR*RGVYHF*KECRDIISVS**CC*RLGVSNFLCK 109
           C +CG +GH+   C  +  E+ +      H  K+C++       CC   G    L +
Sbjct: 54  CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 110

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>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13|
          Length = 166

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 294 QRKEPRCDKCGLTGHIRTQCGR 229
           ++KE +C  CG  GHI+  C +
Sbjct: 106 RQKEQKCYSCGKLGHIQKDCAQ 127

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>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 208
           G + +Q + PR   C KCG +GHI   C      F R
Sbjct: 396 GHSARQCRAPRRQGCWKCGKSGHIMANCPDRQAGFLR 432

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>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6|
          Length = 1495

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 297  KQRKEPRCDKCGLTGHIRTQC 235
            K  +E RC  CG  GHI+ +C
Sbjct: 1446 KDLREKRCFICGREGHIKKEC 1466

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>POLG_HCVED (O39929) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3007

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 49  WYLILRICILWH 14
           WY IL ICI+WH
Sbjct: 765 WYAILFICIVWH 776

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>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1435

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSATIMLQKGNFRDQRKIVKCFNCGKVGHIAKNC 404

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>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 500

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 339 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 235
           T    +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNSATIMLQKGNFRDQRKIVKCFNCGKVGHIAKNC 404

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>RPOT2_ARATH (Q9LFV6) DNA-directed RNA polymerase 2, chloroplast/mitochondrial|
           precursor (EC 2.7.7.6)
          Length = 1011

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 254 PVKPHLSHLGSFLC 295
           P+ PHL+HLGS LC
Sbjct: 597 PMPPHLNHLGSDLC 610

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>NU5M_TRYBB (P04540) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 590

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 172 RHYLSVMIMLLTIGGIKLFVQTIM*FS---VDKCMHAYEGSLICWYLILRICILW 17
           R++LS  + L+ I    +F+   M FS   V  C++ Y     C  L+L  C +W
Sbjct: 23  RNFLSFWLSLVMI----IFIVLCMIFSFLMVSVCLYGYYYYDFCLILMLDFCFIW 73

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>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1549

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = -2

Query: 309 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 208
           G + +Q + PR   C KCG  GHI   C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMANCPERQAGFLR 433

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>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 23.1 bits (48), Expect(2) = 9.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 276 CDKCGLTGHIRTQCGRG 226
           C KCG  GH   +C  G
Sbjct: 196 CYKCGEDGHFARECTSG 212



 Score = 22.7 bits (47), Expect(2) = 9.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 364 CKNCRGKGHNSAKCPANGGG 305
           C  C   GH +  C  +GGG
Sbjct: 159 CFKCGESGHFARDCSQSGGG 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,104,728
Number of Sequences: 219361
Number of extensions: 1167225
Number of successful extensions: 3273
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 2921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3251
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result