ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCNB2_ORYLU (Q9DG96) G2/mitotic-specific cyclin-B2 30 1.4
2CCNB2_ORYCU (Q9DGA3) G2/mitotic-specific cyclin-B2 29 2.4
3SO1C1_RAT (Q9EPZ7) Solute carrier organic anion transporter fami... 29 3.2
4ETXA_STAAW (P0A0L1) Enterotoxin type A precursor (SEA) 29 3.2
5ETXA_STAAU (P0A0L2) Enterotoxin type A precursor (SEA) 29 3.2
6ZN225_HUMAN (Q9UK10) Zinc finger protein 225 28 4.1
7AKA11_RAT (Q62924) A-kinase anchor protein 11 (Protein kinase A-... 28 4.1
8ALG12_SCHPO (Q9USD4) Probable dolichyl-P-Man:Man(7)GlcNAc(2)-PP-... 28 7.0
9SO1C1_MOUSE (Q9ERB5) Solute carrier organic anion transporter fa... 27 9.2
10CCNB_DICDI (P42524) G2/mitotic-specific cyclin-B 27 9.2
11CLPX_AQUAE (O67356) ATP-dependent Clp protease ATP-binding subun... 27 9.2

>CCNB2_ORYLU (Q9DG96) G2/mitotic-specific cyclin-B2|
          Length = 386

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 325 TQLVAPLMIVKLS*SAPVSFGSCSLEQGLCSMLFHVCVA 209
           T+LVAP++    + SAPVS   C  E+ LC     V +A
Sbjct: 67  TELVAPMIQTGAAASAPVSAKPCVKEEQLCQAFSEVLLA 105



to top

>CCNB2_ORYCU (Q9DGA3) G2/mitotic-specific cyclin-B2|
          Length = 388

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 322 QLVAPLMIVKLS*SAPVSFGSCSLEQGLCSMLFHVCVA 209
           QLVAP++    + SAPVS   C  E+ LC     V +A
Sbjct: 70  QLVAPMIQTGAAASAPVSAKPCVKEEQLCQAFSEVLLA 107



to top

>SO1C1_RAT (Q9EPZ7) Solute carrier organic anion transporter family member 1C1|
           (Solute carrier family 21 member 14) (Blood-brain
           barrier-specific anion transporter 1) (BBB-specific
           anion transporter type 1)
          Length = 716

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 341 TAPQRHPAGCTFDDCETLLKCSCFVWFLLLRTRFVQYAFSCVCG*Q 204
           T P  +     F DC +  KCS   W  +     + YA +C+ G Q
Sbjct: 466 TKPVSYHERALFSDCNSRCKCSDSKWEPMCGDNGITYASACLAGCQ 511



to top

>ETXA_STAAW (P0A0L1) Enterotoxin type A precursor (SEA)|
          Length = 257

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
 Frame = +3

Query: 33  SLPLETIQSN--ITPVQDLHLNARNHKIEK---EHSCSFNSKMLVGVLV--RIAEPSNTY 191
           ++PLET+++N     VQ+L L AR +  EK    +S  F+ K+  G++V     EPS  Y
Sbjct: 161 TVPLETVKTNKKNVTVQELDLQARRYLQEKYNLYNSDVFDGKVQRGLIVFHTSTEPSVNY 220

Query: 192 KKF 200
             F
Sbjct: 221 DLF 223



to top

>ETXA_STAAU (P0A0L2) Enterotoxin type A precursor (SEA)|
          Length = 257

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
 Frame = +3

Query: 33  SLPLETIQSN--ITPVQDLHLNARNHKIEK---EHSCSFNSKMLVGVLV--RIAEPSNTY 191
           ++PLET+++N     VQ+L L AR +  EK    +S  F+ K+  G++V     EPS  Y
Sbjct: 161 TVPLETVKTNKKNVTVQELDLQARRYLQEKYNLYNSDVFDGKVQRGLIVFHTSTEPSVNY 220

Query: 192 KKF 200
             F
Sbjct: 221 DLF 223



to top

>ZN225_HUMAN (Q9UK10) Zinc finger protein 225|
          Length = 706

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/78 (24%), Positives = 30/78 (38%)
 Frame = +3

Query: 45  ETIQSNITPVQDLHLNARNHKIEKEHSCSFNSKMLVGVLVRIAEPSNTYKKFDLLATHT* 224
           E      T    LH + R H  EK + C    K        +       ++  L      
Sbjct: 599 EECGKRFTENSQLHSHQRVHTGEKPYKCEKCGKSFRWASTHLTHQRLHSREKLLQCEDCG 658

Query: 225 KSILHKPCSKEQEPNETG 278
           KSI+H  C K+Q+ +++G
Sbjct: 659 KSIVHSSCLKDQQRDQSG 676



to top

>AKA11_RAT (Q62924) A-kinase anchor protein 11 (Protein kinase A-anchoring|
           protein 11) (PRKA11) (A-kinase anchor protein 220 kDa)
           (AKAP 220)
          Length = 1129

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 69  PVQDLHLNARNHKIEKEHSCSFNSKMLVGVLVRIAEPSNT 188
           P Q   L A +H  E   +CSF S M  GV+    + +NT
Sbjct: 499 PSQRSMLPALSHSDESIQTCSFASDMAAGVIAEAEKVANT 538



to top

>ALG12_SCHPO (Q9USD4) Probable|
           dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,
           6-mannosyltransferase (EC 2.4.1.-) (Mannosyltransferase
           ALG12 homolog)
          Length = 546

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 169 ILTRTPTSILLLNEHECSFSILWFLAFRCKSWTGVILLCIV 47
           I T    S+LL N +  S SIL F A   +S   ++L+C++
Sbjct: 146 IATNHSLSLLLKNNYYGSISILVFAAAIVRSEIALLLMCLI 186



to top

>SO1C1_MOUSE (Q9ERB5) Solute carrier organic anion transporter family member 1C1|
           (Solute carrier family 21 member 14) (Organic anion
           transporter F) (OATP-F) (Organic anion-transporting
           polypeptide 14) (Organic anion transporter 2) (OATP2)
          Length = 715

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 341 TAPQRHPAGCTFDDCETLLKCSCFVWFLLLRTRFVQYAFSCVCG*Q 204
           T P  +     F DC +  KCS   W  +     + Y  +C+ G Q
Sbjct: 465 TKPVSYHERALFSDCNSRCKCSDSKWEPMCGDNGITYVSACLAGCQ 510



to top

>CCNB_DICDI (P42524) G2/mitotic-specific cyclin-B|
          Length = 436

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
 Frame = +3

Query: 24  QLMSLPLETIQ-SNITPVQDLHLNARNHKIEKEHSCSFN------SKMLVGVLVRIAEPS 182
           Q   +  +T+Q SN   +     N RN+ I +  S   N      S ++ GVL     P 
Sbjct: 62  QTTGMATKTVQLSNNNIIMPQPTNTRNNIITRSKSIIDNGASLRNSALISGVLPNANGPV 121

Query: 183 NTYKKFDLLATHT*KSILHKPCSKEQEPNETGAL*ESFTII 305
           N  +K D+ +     +I  +P   +   N+T  + E   +I
Sbjct: 122 NKVQKRDIQSMEMMNNIPQQPVMIDDVDNDTNMIQEEQMVI 162



to top

>CLPX_AQUAE (O67356) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 412

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 KIEKEHSCSFNSKMLVGVLVRIAEPSNTY 191
           K+ KE  CSF  K    VL+ IA P+NTY
Sbjct: 4   KVNKEF-CSFCGKRQDEVLILIAGPNNTY 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,995,548
Number of Sequences: 219361
Number of extensions: 1070640
Number of successful extensions: 2274
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2274
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top