Clone Name | rbastl27f01 |
---|---|
Clone Library Name | barley_pub |
>emb|CT573098.3| RP43-076G03, complete sequence Length = 175456 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 158 ttggaaatgaccaaagcccagattat 183 ||||||||||| |||||||||||||| Sbjct: 153912 ttggaaatgactaaagcccagattat 153887
>emb|CT573270.1| RP43-049F09, complete sequence Length = 165723 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 158 ttggaaatgaccaaagcccagattat 183 ||||||||||| |||||||||||||| Sbjct: 65874 ttggaaatgactaaagcccagattat 65849
>gb|AC120003.6| Mus musculus chromosome 8, clone RP24-148H22, complete sequence Length = 210466 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 aaagggggtaaaaaagacaag 130 ||||||||||||||||||||| Sbjct: 21247 aaagggggtaaaaaagacaag 21267
>gb|AC115484.2| Drosophila melanogaster clone BACR06K01, complete sequence Length = 168504 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 atttttgtcaacaaacatggtctaa 206 |||||||||||| |||||||||||| Sbjct: 13623 atttttgtcaaccaacatggtctaa 13647
>emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on chromosome 13 Contains a CpG island, complete sequence Length = 157379 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tcataaatagcattgcatata 26 ||||||||||||||||||||| Sbjct: 152859 tcataaatagcattgcatata 152839
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 ggtgttatgtagttcttcccc 285 ||||||||||||||||||||| Sbjct: 173013 ggtgttatgtagttcttcccc 172993
>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence Length = 96678 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 tccccagaagcctctagggtt 301 ||||||||||||||||||||| Sbjct: 13488 tccccagaagcctctagggtt 13508
>ref|NM_080191.2| Drosophila melanogaster weckle CG4148-RA (wek), mRNA Length = 1659 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 atttttgtcaacaaacatggtctaa 206 |||||||||||| |||||||||||| Sbjct: 1520 atttttgtcaaccaacatggtctaa 1496
>gb|AY051673.1| Drosophila melanogaster LD22579 full length cDNA Length = 1677 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 atttttgtcaacaaacatggtctaa 206 |||||||||||| |||||||||||| Sbjct: 1520 atttttgtcaaccaacatggtctaa 1496
>gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57 of 83 of the complete sequence Length = 284900 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 atttttgtcaacaaacatggtctaa 206 |||||||||||| |||||||||||| Sbjct: 239157 atttttgtcaaccaacatggtctaa 239181
>gb|AY346378.1| Penaeus monodon crustacean hyperglycemic hormone 1 precursor (CHH1) gene, complete cds Length = 907 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gttcttccccagaagcctct 295 |||||||||||||||||||| Sbjct: 175 gttcttccccagaagcctct 194
>gb|DQ452367.1| Liriomyza huidobrensis clone 3 heat shock protein Hsp40 (Hsp40) mRNA, partial cds Length = 1081 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ggtaaaaaagacaaggaaac 135 |||||||||||||||||||| Sbjct: 992 ggtaaaaaagacaaggaaac 1011
>gb|DQ452366.1| Liriomyza huidobrensis clone 2 heat shock protein Hsp40 (Hsp40) mRNA, partial cds Length = 1325 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ggtaaaaaagacaaggaaac 135 |||||||||||||||||||| Sbjct: 993 ggtaaaaaagacaaggaaac 1012
>emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on chromosome 6 Contains part of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 169493 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 attatttttgtcaacaaaca 198 |||||||||||||||||||| Sbjct: 68459 attatttttgtcaacaaaca 68478
>gb|AF233295.1| Penaeus monodon crustacean hyperglycemic hormone 1 precursor (CHH1) mRNA, complete cds Length = 593 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gttcttccccagaagcctct 295 |||||||||||||||||||| Sbjct: 175 gttcttccccagaagcctct 194
>emb|BX649410.18| Mouse DNA sequence from clone RP23-168C6 on chromosome 4 Contains a ribosomal protein S6 (Rps6) pseudogene and a novel gene, complete sequence Length = 231582 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gttccacactgggtaaaggt 323 |||||||||||||||||||| Sbjct: 81134 gttccacactgggtaaaggt 81153
>gb|AC093886.2| Homo sapiens BAC clone RP11-666L21 from 4, complete sequence Length = 174332 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 taaaaaagacaaggaaacaa 137 |||||||||||||||||||| Sbjct: 148456 taaaaaagacaaggaaacaa 148437
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 87 ttgtcatcagatgtattcgctcaaaagg 114 ||||||||||| ||||||||||||||| Sbjct: 77353 ttgtcatcagacctattcgctcaaaagg 77326
>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence Length = 163855 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ttggaaatgaccaaagccca 177 |||||||||||||||||||| Sbjct: 103554 ttggaaatgaccaaagccca 103573
>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence Length = 169897 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tatttttgtcaacaaacatg 200 |||||||||||||||||||| Sbjct: 78890 tatttttgtcaacaaacatg 78909
>emb|AL391703.9| Human DNA sequence from clone RP11-422P8 on chromosome 1 Contains the 5' end of the GNG12 gene for guanine nucleotide binding protein (G protein), gamma 12, the 5' end of a novel gene (FLJ38762, FLJ42034) and a CpG island, complete sequence Length = 191741 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 caaggaaacaagcacgtttagcag 150 ||||||||||||||||||| |||| Sbjct: 98968 caaggaaacaagcacgttttgcag 98945
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 87 ttgtcatcagatgtattcgctcaaaagg 114 ||||||||||| ||||||||||||||| Sbjct: 67167 ttgtcatcagacctattcgctcaaaagg 67140
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 87 ttgtcatcagatgtattcgctcaaaagg 114 ||||||||||| ||||||||||||||| Sbjct: 12184 ttgtcatcagacctattcgctcaaaagg 12211
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ataaatagcattgcatatag 27 |||||||||||||||||||| Sbjct: 2819035 ataaatagcattgcatatag 2819054
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tgtagttcttccccagaagc 291 |||||||||||||||||||| Sbjct: 1361884 tgtagttcttccccagaagc 1361865 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,353,536 Number of Sequences: 3902068 Number of extensions: 3353536 Number of successful extensions: 84652 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84595 Number of HSP's gapped (non-prelim): 57 length of query: 380 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 358 effective length of database: 17,147,199,772 effective search space: 6138697518376 effective search space used: 6138697518376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)