ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.42
2gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 42 0.42
3gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 0.42
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.42
5dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.42
6dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.42
7dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.42
8dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.42
9emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chro... 42 0.42
10emb|AL354711.24| Human DNA sequence from clone RP11-340N12 on ch... 40 1.6
11gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete... 38 6.5
12gb|AC174376.8| Medicago truncatula clone mth2-56h21, complete se... 38 6.5
13emb|CR388100.7| Zebrafish DNA sequence from clone DKEY-126H23 in... 38 6.5
14gb|AC121934.4| Mus musculus BAC clone RP24-207A18 from chromosom... 38 6.5
15emb|Z68879.1|CEK08F4 Caenorhabditis elegans Cosmid K08F4, comple... 38 6.5
16gb|AC110552.14| Mus musculus chromosome 17, clone RP23-247L7, co... 38 6.5
17gb|AY274112.1| Aythya americana phosphoenolpyruvate carboxykinas... 38 6.5
18emb|AL592159.1| Human DNA sequence from clone RP13-237P14 on chr... 38 6.5
19emb|AL158821.16| Human DNA sequence from clone RP1-75H8 on chrom... 38 6.5
20gb|AC100801.4| Homo sapiens chromosome 8, clone CTA-392E5, compl... 38 6.5
21emb|X64954.1|SCYCR1152 S.cerevisiae ORF YCR1152 for putative mis... 38 6.5
22emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA s... 38 6.5
23gb|BC095561.1| Danio rerio zgc:111823, mRNA (cDNA clone MGC:1118... 38 6.5
24emb|BX005370.13| Zebrafish DNA sequence from clone DKEY-21P9 in ... 38 6.5
25gb|AC097632.2| Homo sapiens chromosome 3 clone RP11-90H15, compl... 38 6.5
26gb|AC013644.7| Homo sapiens chromosome 8, clone RP11-17A4, compl... 38 6.5
27gb|AC147632.3| Mus musculus BAC clone RP23-326H18 from chromosom... 38 6.5
28ref|NM_069442.2| Caenorhabditis elegans K08F4.3 (K08F4.3) mRNA, ... 38 6.5
29ref|NM_001020756.1| Danio rerio zgc:111823 (zgc:111823), mRNA 38 6.5
30gb|BC078186.1| Danio rerio hypothetical protein LOC553236, mRNA ... 38 6.5
31gb|AF206725.6| Homo sapiens chromosome 8 clone CTA-392E5 map q21... 38 6.5
32gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, compl... 38 6.5
33gb|AC009892.5|AC009892 Homo sapiens chromosome 19 clone CTB-83J4... 38 6.5
34emb|AL954663.13| Zebrafish DNA sequence from clone DKEY-47L19 in... 38 6.5
35emb|X59359.1|TMACHECO T.marmorata mRNA for acetylcholinesterase ... 38 6.5
36emb|X70151.1|SCCDC S. cerevisiae cdc39 gene 38 6.5
37emb|AL935281.7| Zebrafish DNA sequence from clone CH211-237G1, c... 38 6.5
38emb|AL929306.4| Zebrafish DNA sequence from clone CH211-145C5 in... 38 6.5
39emb|AL844526.5| Mouse DNA sequence from clone RP23-201O18 on chr... 38 6.5
40emb|AL732460.7| Mouse DNA sequence from clone RP23-113I19 on chr... 38 6.5 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  ttattgagcttaggggaaaaacaatgtat 136
            ||||| || ||||||||||||||||||||
Sbjct: 3443 ttattaagtttaggggaaaaacaatgtat 3415
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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    ttattgagcttaggggaaaaa 128
              |||||||||||||||||||||
Sbjct: 246866 ttattgagcttaggggaaaaa 246886
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>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   ttattgagcttaggggaaaaa 128
             |||||||||||||||||||||
Sbjct: 88447 ttattgagcttaggggaaaaa 88467
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 108      ttattgagcttaggggaaaaacaatgtat 136
                ||||| || ||||||||||||||||||||
Sbjct: 19118371 ttattaagtttaggggaaaaacaatgtat 19118399
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 108   ttattgagcttaggggaaaaacaatgtat 136
             ||||| || ||||||||||||||||||||
Sbjct: 16620 ttattaagtttaggggaaaaacaatgtat 16648
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 108    ttattgagcttaggggaaaaacaatgtat 136
              ||||| || ||||||||||||||||||||
Sbjct: 123892 ttattaagtttaggggaaaaacaatgtat 123920
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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  ttattgagcttaggggaaaaacaatgtat 136
            ||||| || ||||||||||||||||||||
Sbjct: 3441 ttattaagtttaggggaaaaacaatgtat 3413
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>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 108  ttattgagcttaggggaaaaacaatgtat 136
            ||||| || ||||||||||||||||||||
Sbjct: 1459 ttattaagtttaggggaaaaacaatgtat 1431
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>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete
              sequence
          Length = 195413

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 88     gtccacaaaggacacagacct 108
              |||||||||||||||||||||
Sbjct: 152418 gtccacaaaggacacagacct 152438
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>emb|AL354711.24| Human DNA sequence from clone RP11-340N12 on chromosome 9 Contains the 3'
              end of a novel gene (FLJ25636) and the 5' end of a novel
              gene (FLJ20276), complete sequence
          Length = 162126

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     ttccaatcctgaatttaatttcca 35
              |||||||||||||||| |||||||
Sbjct: 145724 ttccaatcctgaatttcatttcca 145701
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>gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete sequence
          Length = 173785

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  aggacacagaccttattga 114
           |||||||||||||||||||
Sbjct: 675 aggacacagaccttattga 657
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>gb|AC174376.8| Medicago truncatula clone mth2-56h21, complete sequence
          Length = 111561

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     tgaatttaatttccattga 39
              |||||||||||||||||||
Sbjct: 102966 tgaatttaatttccattga 102984
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>emb|CR388100.7| Zebrafish DNA sequence from clone DKEY-126H23 in linkage group 19,
             complete sequence
          Length = 138214

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    tctacaaagaagaaacgca 87
             |||||||||||||||||||
Sbjct: 95206 tctacaaagaagaaacgca 95224
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>gb|AC121934.4| Mus musculus BAC clone RP24-207A18 from chromosome 5, complete sequence
          Length = 152037

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 119   aggggaaaaacaatgtata 137
             |||||||||||||||||||
Sbjct: 16372 aggggaaaaacaatgtata 16390
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>emb|Z68879.1|CEK08F4 Caenorhabditis elegans Cosmid K08F4, complete sequence
          Length = 25433

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   tttccattgactgcaatcc 48
            |||||||||||||||||||
Sbjct: 9446 tttccattgactgcaatcc 9464
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>gb|AC110552.14| Mus musculus chromosome 17, clone RP23-247L7, complete sequence
          Length = 185205

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    tgagcttaggggaaaaaca 130
              |||||||||||||||||||
Sbjct: 104031 tgagcttaggggaaaaaca 104013
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>gb|AY274112.1| Aythya americana phosphoenolpyruvate carboxykinase (PEPCK) gene,
           exon 9, intron 9, exon 10 and partial cds
          Length = 686

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 23  aatttaatttccattgactgcaa 45
           |||||| ||||||||||||||||
Sbjct: 407 aatttactttccattgactgcaa 429
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>emb|AL592159.1| Human DNA sequence from clone RP13-237P14 on chromosome X, complete
            sequence
          Length = 12858

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   caatcctgaatttaatttc 33
            |||||||||||||||||||
Sbjct: 3932 caatcctgaatttaatttc 3914
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>emb|AL158821.16| Human DNA sequence from clone RP1-75H8 on chromosome Xq22.3-23 Contains
             the 3' end of the CLDN2 gene for claudin 2, a novel gene,
             the 5' end of a eukaryotic translation elongation factor 1
             alpha 1 (EEF1A1) pseudogene and a CpG island, complete
             sequence
          Length = 109465

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    caaagaagaaacgcagtcc 91
             |||||||||||||||||||
Sbjct: 75789 caaagaagaaacgcagtcc 75771
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>gb|AC100801.4| Homo sapiens chromosome 8, clone CTA-392E5, complete sequence
          Length = 111708

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    taatttccattgactgcaa 45
             |||||||||||||||||||
Sbjct: 28459 taatttccattgactgcaa 28441
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>emb|X64954.1|SCYCR1152 S.cerevisiae ORF YCR1152 for putative mismatch binding protein
          Length = 6281

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 100  cacagaccttattgagctt 118
            |||||||||||||||||||
Sbjct: 1127 cacagaccttattgagctt 1109
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>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence
          Length = 316613

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    cacagaccttattgagctt 118
              |||||||||||||||||||
Sbjct: 280424 cacagaccttattgagctt 280442
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>gb|BC095561.1| Danio rerio zgc:111823, mRNA (cDNA clone MGC:111823
          IMAGE:5916399), complete cds
          Length = 1842

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 69 tctacaaagaagaaacgca 87
          |||||||||||||||||||
Sbjct: 46 tctacaaagaagaaacgca 64
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>emb|BX005370.13| Zebrafish DNA sequence from clone DKEY-21P9 in linkage group 10, complete
              sequence
          Length = 208765

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 119    aggggaaaaacaatgtata 137
              |||||||||||||||||||
Sbjct: 110439 aggggaaaaacaatgtata 110457
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>gb|AC097632.2| Homo sapiens chromosome 3 clone RP11-90H15, complete sequence
          Length = 131796

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 57    atatgttctgcctctacaaagaa 79
             ||||||||| |||||||||||||
Sbjct: 92136 atatgttcttcctctacaaagaa 92158
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>gb|AC013644.7| Homo sapiens chromosome 8, clone RP11-17A4, complete sequence
          Length = 168477

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 52     gtattatatgttctgcctctaca 74
              |||||||||||||| ||||||||
Sbjct: 140517 gtattatatgttctacctctaca 140539
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>gb|AC147632.3| Mus musculus BAC clone RP23-326H18 from chromosome 5, complete sequence
          Length = 185519

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 119   aggggaaaaacaatgtata 137
             |||||||||||||||||||
Sbjct: 68523 aggggaaaaacaatgtata 68505
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>ref|NM_069442.2| Caenorhabditis elegans K08F4.3 (K08F4.3) mRNA, complete cds
          Length = 598

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 30  tttccattgactgcaatcc 48
           |||||||||||||||||||
Sbjct: 475 tttccattgactgcaatcc 493
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>ref|NM_001020756.1| Danio rerio zgc:111823 (zgc:111823), mRNA
          Length = 1842

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 69 tctacaaagaagaaacgca 87
          |||||||||||||||||||
Sbjct: 46 tctacaaagaagaaacgca 64
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>gb|BC078186.1| Danio rerio hypothetical protein LOC553236, mRNA (cDNA clone
          IMAGE:7138668), partial cds
          Length = 1635

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 69 tctacaaagaagaaacgca 87
          |||||||||||||||||||
Sbjct: 36 tctacaaagaagaaacgca 54
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>gb|AF206725.6| Homo sapiens chromosome 8 clone CTA-392E5 map q21-q23, complete
             sequence
          Length = 111702

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    taatttccattgactgcaa 45
             |||||||||||||||||||
Sbjct: 83245 taatttccattgactgcaa 83263
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>gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, complete sequence
          Length = 154123

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 57  atatgttctgcctctacaaagaa 79
           ||||||||| |||||||||||||
Sbjct: 566 atatgttcttcctctacaaagaa 588
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>gb|AC009892.5|AC009892 Homo sapiens chromosome 19 clone CTB-83J4, complete sequence
          Length = 134008

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 64    ctgcctctacaaagaagaa 82
             |||||||||||||||||||
Sbjct: 35251 ctgcctctacaaagaagaa 35233
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>emb|AL954663.13| Zebrafish DNA sequence from clone DKEY-47L19 in linkage group 11,
              complete sequence
          Length = 224753

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     atttaatttccattgactg 42
              |||||||||||||||||||
Sbjct: 147274 atttaatttccattgactg 147292
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>emb|X59359.1|TMACHECO T.marmorata mRNA for acetylcholinesterase (AChE) collagenic tail
            peptide
          Length = 2947

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 95   aaggacacagaccttattg 113
            |||||||||||||||||||
Sbjct: 2229 aaggacacagaccttattg 2211
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>emb|X70151.1|SCCDC S. cerevisiae cdc39 gene
          Length = 7374

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 100 cacagaccttattgagctt 118
           |||||||||||||||||||
Sbjct: 826 cacagaccttattgagctt 844
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>emb|AL935281.7| Zebrafish DNA sequence from clone CH211-237G1, complete sequence
          Length = 149939

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 119   aggggaaaaacaatgtata 137
             |||||||||||||||||||
Sbjct: 49240 aggggaaaaacaatgtata 49258
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>emb|AL929306.4| Zebrafish DNA sequence from clone CH211-145C5 in linkage group 11,
            complete sequence
          Length = 176222

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 24   atttaatttccattgactg 42
            |||||||||||||||||||
Sbjct: 9224 atttaatttccattgactg 9242
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>emb|AL844526.5| Mouse DNA sequence from clone RP23-201O18 on chromosome 2, complete
              sequence
          Length = 204398

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     cctgaatttaatttccatt 37
              |||||||||||||||||||
Sbjct: 202193 cctgaatttaatttccatt 202175
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>emb|AL732460.7| Mouse DNA sequence from clone RP23-113I19 on chromosome X, complete
              sequence
          Length = 198572

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     aatttccattgactgcaat 46
              |||||||||||||||||||
Sbjct: 100991 aatttccattgactgcaat 101009


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,481,692
Number of Sequences: 3902068
Number of extensions: 1481692
Number of successful extensions: 107333
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107229
Number of HSP's gapped (non-prelim): 104
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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