>ATG12_MAGGR (Q51P78) Autophagy-related protein 12 (Autophagy-related|
           ubiquitin-like modifier ATG12)
          Length = 181

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 180 PGLRSISLNFTT--PPSSLSPAPKSFRRKTSPLDTHAETFRAKDGAPVQKDEDSNGSARV 353
           P LR  SL+  T  PPSS S AP S     +P+   A      DG+P   D     SA V
Sbjct: 12  PQLRRPSLSTPTPPPPSSSSTAPAS--SSATPIPDDAPDADDNDGSPPSPDLPLTMSASV 69

Query: 354 VLAGLP 371
           +L  LP
Sbjct: 70  MLTQLP 75

>K0553_HUMAN (Q9UKJ3) Protein KIAA0553|
          Length = 1089

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 216 PPSSLSPAPKSFRRKTSPLDTHAETFRAKDGAPVQKDEDSNGSA 347
           PP S SPAP   RR+    D+   +  A++G+  +KDE   GS+
Sbjct: 322 PPGSGSPAPPRRRRRAQD-DSQRRSLPAEEGSSGKKDEGGGGSS 364

>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)|
          Length = 1073

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +3

Query: 129 STNTTKTHFDNESTSFCPGLRSISLNFTTPPSSLSPAPKSFR-RKTSPLDTHAETFRAKD 305
           S + +  + D+ STS  PG      N  T  ++L+PAP +   RK  PL          D
Sbjct: 116 SNSNSNCNSDSNSTSSSPGNSHFFANGNTCAAALTPAPPATEPRKIKPLGAGKLKVGKTD 175

Query: 306 GAPVQKDEDSNGSARVVLAGLPGAIQYTTS 395
                 D +SN  +R   A    A   T++
Sbjct: 176 S---NSDSNSNCDSRAAAAASTSATSATSA 202

>SVL3_YEAST (Q03088) Styryl dye vacuolar localization protein 3|
          Length = 825

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
 Frame = +3

Query: 99  QSQV*IKKLISTNTTKTHFDNE-STSFCPGLRSI------SLNF-TTPPSSLSPAPKSFR 254
           Q+Q  I+ L  T  T     NE   +  P LR I      S+N+  +P  S  P   S  
Sbjct: 425 QAQTSIEALTPTEATNQSDTNEYKATGTPNLRDIEDMALYSVNYGDSPVRSPPPVVSSQP 484

Query: 255 RKTSPLDTHAETFRAKDG 308
           +  SPL +H++TF   +G
Sbjct: 485 QMNSPLSSHSQTFGENNG 502

>SRC8_MOUSE (Q60598) Src substrate cortactin|
          Length = 546

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 213 TPPSSLSPAPKSFRRKTSPLDTHAETFRAKDGAPVQKDEDSNGSARVVLAGLPGA 377
           TPP+S SP P   R  +SP+   A  F+A+   P  +  +      +  AG+P A
Sbjct: 401 TPPASPSPQPIEDRPPSSPIYEDAAPFKAE---PSYRGSEPEPEYSIEAAGIPEA 452

>Y005_CHLTR (O84008) Hypothetical protein CT_005|
          Length = 363

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 117 KKLISTNTTKTHFDNESTSFCPGLRSISLNFTTPPSSLSPAPKSFRR--KTSPLDTHAET 290
           K+L  +N++ +   +E       + +  ++  TPPS  S +PK+ RR  K S  + +A+ 
Sbjct: 271 KELSDSNSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTTRRVVKLSRSERNAQH 330

Query: 291 FRAKDGAPVQKDEDSN 338
            R KD    Q   +S+
Sbjct: 331 HRNKDQEQRQDSSESS 346

>GANAB_HUMAN (Q14697) Neutral alpha-glucosidase AB precursor (EC 3.2.1.84)|
           (Glucosidase II alpha subunit)
          Length = 944

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 289 HSERRTGHLYKRTKIQTGRQGWCWRACRGQYNIQRP 396
           H E R   LY +T+  +  +GWCW    G  +   P
Sbjct: 480 HEELRNLGLYVKTRDGSDYEGWCWPGSAGYPDFTNP 515

>RGF1_SCHPO (Q9Y7U6) Rho1 guanine nucleotide exchange factor 1|
          Length = 1334

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 189 RSISLNFTTPPSSLSPAPKSFRRKTSPLDT--HAETF 293
           RS SL    PPSS  PAP + +R+ SP+    H+E+F
Sbjct: 65  RSTSLQ---PPSSQPPAPPTHQREASPVKNIEHSESF 98

>MDM12_SCHPO (Q92377) Mitochondrial inheritance component mdm12|
          Length = 273

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 231 SPAPKSFRRKTSPLDTHAETFRAKD---GAPVQKDEDSNGSARVVLA 362
           SP P+S  R ++P+D H E  R+ D    A V  D D+N S   VL+
Sbjct: 126 SPIPES--RPSTPMDNHQERDRSNDFQVTAHVSYDGDANLSLEAVLS 170

>SYP2L_MOUSE (Q8BWB1) Synaptopodin 2-like protein|
          Length = 975

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +3

Query: 213 TPPSSLSPAPKSFRRKTSPLDTHAET---FRAKDGAPVQKDEDSNGSARVVLAGLPGAIQ 383
           +PP + S  P++     SPL   A +   F    GAP+      N SAR    GL G   
Sbjct: 418 SPPRAQSAPPEAAVLPLSPLSVPAVSPTPFFPDGGAPIPAPSIFNRSARPFTPGLQGQRS 477

Query: 384 YTTS 395
            TTS
Sbjct: 478 GTTS 481

>AFAD_HUMAN (P55196) Afadin (AF-6 protein)|
          Length = 1816

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 252 RRKTSPLDTHAETFRAKDGAPVQKDEDSNGSARVVLAGLPGAIQYTT 392
           RR+   L+   + FR+ DG P     DS G+ R+    L   I Y T
Sbjct: 223 RRRQQKLEKRMQEFRSSDGRP-----DSGGTLRIYADSLKPNIPYKT 264

>TEP1_MOUSE (P97499) Telomerase protein component 1 (Telomerase-associated|
            protein 1) (Telomerase protein 1) (p240) (p80 homolog)
          Length = 2629

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 370  GKPANTTLADP-FESSSFCTGAPSFALNVSACVSKGE 263
            G P + T A P  ESS  C  +     N+S C S+GE
Sbjct: 2469 GSPVSITQAKPESESSLLCATSDGMLWNLSECTSEGE 2505

>GANAB_MOUSE (Q8BHN3) Neutral alpha-glucosidase AB precursor (EC 3.2.1.84)|
           (Glucosidase II alpha subunit) (Alpha glucosidase 2)
          Length = 944

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 289 HSERRTGHLYKRTKIQTGRQGWCW 360
           H E R   LY +T+  +  +GWCW
Sbjct: 480 HEELRNHGLYVKTRDGSDYEGWCW 503

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 126 ISTNTTKTHFDNESTSFCPGLRSISLNFTTPPSSLSPAPKSFRRKTSPLDTHAET 290
           IST +T      ES+S  P + SI L+ ++ PSSL  +  +    T+ +    +T
Sbjct: 634 ISTPSTSVESTIESSSLTPTVSSIFLSSSSAPSSLQTSVTTTEVSTTSISIQYQT 688

>AFAD_MOUSE (Q9QZQ1) Afadin (Af-6 protein) (Fragment)|
          Length = 885

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 252 RRKTSPLDTHAETFRAKDGAPVQKDEDSNGSARVVLAGLPGAIQYTT 392
           RR+   L+   + FR+ DG P     DS G+ R+    L   I Y T
Sbjct: 224 RRRQQKLEKRMQEFRSSDGRP-----DSGGTLRIYADSLKPNIPYKT 265

>AFAD_RAT (O35889) Afadin (Af-6 protein)|
          Length = 1829

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 252 RRKTSPLDTHAETFRAKDGAPVQKDEDSNGSARVVLAGLPGAIQYTT 392
           RR+   L+   + FR+ DG P     DS G+ R+    L   I Y T
Sbjct: 224 RRRQQKLEKRMQEFRSSDGRP-----DSGGTLRIYADSLKPNIPYKT 265

>ODH_ARTSC (Q44297) Opine dehydrogenase (EC 1.5.1.28)|
           (N-(1-D-carboxyethyl)-L-norvaline dehydrogenase)
          Length = 359

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -1

Query: 304 SFALNVSACVSKGEVFLLKLFGAGDSDDGGVVKFREIDRKPGQNEV 167
           S A N+++ +S+G++ +L          GG ++FR+I R+ G  EV
Sbjct: 90  SIAANIASYISEGQLIILN-----PGATGGALEFRKILRENGAPEV 130

>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C|
           repair-complementing complex 58 kDa protein) (p58)
          Length = 409

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +3

Query: 129 STNTTKTHFDNESTSFCPGLRSISLNFTTPPSSLSPAPKSFRRKTSPLDTHAETFRAKDG 308
           ST TT         +  P     S+   +  +S  PAP S  ++  P +  AET  A   
Sbjct: 102 STTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVAT-- 159

Query: 309 APVQKDEDSNGSAR 350
           +P   D  S  S+R
Sbjct: 160 SPTATDSTSGDSSR 173

>UL21_PRVN3 (Q00703) Protein UL21 homolog|
          Length = 523

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
 Frame = -1

Query: 346 ADPF--ESSSFCTGAPSFAL--------NVSACVSKGEVFLLKL-----FGAGDSDDGG 215
           ADPF    S+  TGA  FAL        ++ +C +  E  L +L      GAGD DDGG
Sbjct: 294 ADPFFGTGSTSLTGAQRFALYQFILARWHLPSCYAALEGMLDRLDERPGAGAGDDDDGG 352

>MIG2_YEAST (P53035) Regulatory protein MIG2|
          Length = 382

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 129 STNTTKTHFDNESTSFCPGLRSISLNFTTPPSSLSPAPK--SFRRKTSPLDTHAETFRAK 302
           ST        ++S+       +ISL F+  PS L+ A +  S    ++   T     RAK
Sbjct: 262 STTIESPSSPSDSSHTSASSSAISLPFSNAPSQLAVAKELESVYLDSNRYTTKTRRERAK 321

Query: 303 DGAPVQKDEDSNGSA 347
              P +++ED+N S+
Sbjct: 322 FEIPEEQEEDTNNSS 336

>PHYD_ARATH (P42497) Phytochrome D|
          Length = 1164

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 307 PSFALNVSACVSKGEVFLLKLFGAGDSDDGGVVKFREIDRKPGQNEVDSLSKC 149
           P FA+++  C++     + +L G    D  G    RE+  K  +  VD L  C
Sbjct: 670 PIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVDRLLSC 722

>YBF3_YEAST (P38190) Very hypothetical 13.2 kDa protein in PTC3-SAS3 intergenic|
           region
          Length = 124

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 87  SNRFQSQV*IKKLISTNTTKTHFDNESTSFCPGLRSISLNFTTPPSSLSPAPKSF 251
           S+ F S +    + S+    +   + S +F P   S+S +F+T   S    P SF
Sbjct: 66  SSSFSSDICSSSMSSSRVKSSSSSSSSLAFSPTYNSVSTSFSTSSCSKLDIPVSF 120

>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein|
          Length = 977

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 213 TPPSSLSPAPKSFRRKTSPLDTHAET---FRAKDGAPVQKDEDSNGSARVVLAGLPGAIQ 383
           +PP + S  P++     SPL     +   F+   GAP       N SAR    GL G   
Sbjct: 421 SPPRAQSAPPEAAVLPPSPLPAPVASPRPFQPGGGAPTPAPSIFNRSARPFTPGLQGQRP 480

Query: 384 YTTS 395
            TTS
Sbjct: 481 TTTS 484

>SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1|
          Length = 620

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
 Frame = +3

Query: 144 KTHFDNESTSFCP-GLRSISLNFTTPPSSL---------SPAPKSFRRKTSPLDTH---A 284
           K  F N +  F P G+ S+ L   T   SL         SP+P+S R + SP  +H    
Sbjct: 310 KAAFPNYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIP 369

Query: 285 ETFRAKDGAP 314
            T    DG P
Sbjct: 370 STLPPADGVP 379

>GROU_DROME (P16371) Protein groucho (Enhancer of split m9/10 protein)|
           (E(spl)m9/10)
          Length = 719

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 222 SSLSPAPKSFRRKTSPLDTHAETFRAKDGAPVQKDEDSNGSARVVL 359
           +S+SPA +   R  SPLD   ++ R KD   +Q+DE       +V+
Sbjct: 193 NSVSPADREKYRTRSPLDIENDSKRRKD-EKLQEDEGEKSDQDLVV 237

>VIF_HV2D2 (P15834) Virion infectivity factor (Vif) (SOR protein) (Q protein)|
          Length = 216

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 256 GRLRP*TRTLKHSERRTGHLYKRTKIQTGRQGWCWRAC 369
           GRL      +K+ + RTG L + + +   + GW W  C
Sbjct: 17  GRLERWHSLIKYLKYRTGELQQVSYVPHHKVGWAWWTC 54

>TY3H_MOUSE (P24529) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyrosine|
           3-hydroxylase) (TH)
          Length = 498

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 219 PSSLSPAPKSFRRKTSPLDT 278
           PS+ SP PK FRR  S  DT
Sbjct: 4   PSASSPQPKGFRRAVSEQDT 23

>SYNG_MOUSE (Q5SV85) AP1 gamma subunit-binding protein 1 (Gamma-synergin)|
          Length = 1306

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +2

Query: 89  QQISIPGLNKKINQHKHNKDTF*Q*IHFILPRFAVNFPEFHNPTVITVTSPKELQEEDFA 268
           +Q+S+ G    + + K N  +          +   +F +FH+    + +S K L E+  A
Sbjct: 741 KQLSLEGAGLAMEEFKENTSS---------TKSEDDFADFHSSKFSSTSSDKSLGEKAVA 791

Query: 269 LRHAR 283
            RHA+
Sbjct: 792 FRHAK 796

>SRBS1_HUMAN (Q9BX66) Sorbin and SH3 domain-containing protein 1 (Ponsin)|
           (c-Cbl-associated protein) (CAP) (SH3 domain protein 5)
           (SH3P12)
          Length = 1292

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 165 STSFCPGLRSISLNFTTPPSSLSPAPKSFRRKTSPLDTHAETFRAKDGAPVQKDEDSN 338
           S SF P +     +F+ PP  + PAP+  RR + P  T A +  + D +P+  +  S+
Sbjct: 228 SGSFAP-ISQTPPSFSPPPPLVPPAPEDLRRVSEPDLTGAVS--STDSSPLLNEVSSS 282

>MA205_DROME (P23226) 205 kDa microtubule-associated protein|
          Length = 1185

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 63   IKLTVDGPSNRFQSQV*IKKLISTNTTK--THFDNESTSFCPGLRSISLNFTTPPSSLSP 236
            +K  V  P +   S   ++K+ ST+T    T   N+  S   G  + S   TT  ++ + 
Sbjct: 982  VKPKVLSPRSTISSTTTVRKVPSTSTPSFSTRSPNKQQSNGLGKNTSS---TTTSTATAT 1038

Query: 237  APKSFRRKTSPLDTHAETFRAKDGA 311
              KSF  +++P  TH+ +    +G+
Sbjct: 1039 ITKSFTARSAPKFTHSASLTYNNGS 1063


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,400,372
Number of Sequences: 219361
Number of extensions: 1123312
Number of successful extensions: 2992
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2991
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)