ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1 30 2.3
2TMED6_HUMAN (Q8WW62) Transmembrane emp24 domain-containing prote... 29 5.0
3AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-bet... 28 8.6

>IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1|
          Length = 505

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 212 LSAVYSCMLLPVQLYHTFNHSNKFASTSPTAFGRY--FYAVTNLSLKDWLVSIAFQR 48
           L +VYS  L  V+ +HT  + +++ +T     G      A+  L L+ ++V I F +
Sbjct: 157 LDSVYSSFLFAVETHHTIGYGHRYITTECYLAGAIVCLQAICALLLQSFMVGIVFAK 213



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>TMED6_HUMAN (Q8WW62) Transmembrane emp24 domain-containing protein 6 precursor|
          Length = 240

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +3

Query: 21  TPAKKTVQRPLEGNGHQPIFEG*ICY--SIEVP---TKCCWR 131
           T A+     PL G+G QP+F G   Y  +I +P   T+C W+
Sbjct: 17  TSARSQKTEPLSGSGDQPLFRGADRYDFAIMIPPGGTECFWQ 58



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>AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-beta-induced|
           apoptosis protein 3) (TAIP-3)
          Length = 583

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -2

Query: 181 QCNCIILSTIPISL----PRHRQQHLVGTSML*QIYPSKIGWCPLPSRGLCTVFFA 26
           Q +C + S  P S+    PR R  H+    +    +P   G+  +PSRG CT+  A
Sbjct: 59  QDSCGLQSFTPPSILKRAPRERPGHVAFNGITVYYFPRCQGFTSVPSRGGCTLGMA 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,984,737
Number of Sequences: 219361
Number of extensions: 1200561
Number of successful extensions: 3150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3149
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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