Clone Name | rbastl27e09 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009451.1| Triticum aestivum clone wlmk8.pk0022.c11:fis, full insert mRNA sequence Length = 1986 Score = 381 bits (192), Expect = e-102 Identities = 341/388 (87%), Gaps = 7/388 (1%) Strand = Plus / Minus Query: 36 acggtacagaggcctctggaaggcaatggacaccaaccaatctttgagggata--aattt 93 |||||||||||||||||||||||||||| |||| |||||||| |||||| ||| ||| | Sbjct: 1846 acggtacagaggcctctggaaggcaatgcacacgaaccaatccttgaggaatataaatgt 1787 Query: 94 gttacagcatagaagtaccgaccaaatgctgttggcgatgtcgag----gcaaacttatt 149 |||||| ||||||||||||||||||||||| ||| |||||||| ||||| ||||| Sbjct: 1786 gttacaatatagaagtaccgaccaaatgctgctggtgatgtcgataatcgcaaatttatt 1727 Query: 150 ggaatggttgaaagtatgatacagttgcactggaagcagcatacaagaata-cactgcag 208 |||||| || |||| | ||| |||||| | |||| ||| ||| ||||||| |||||||| Sbjct: 1726 ggaatgattaaaagcacgatgcagttggattggatgcaccatccaagaatggcactgcag 1667 Query: 209 aaagaaccgacttgccgcgtctagacacgaacctctggaacatgtagtatcttctgatgc 268 ||||||||| ||||| |||| |||||||||||||||||||||| |||||| ||||| Sbjct: 1666 aaagaaccggtgagccgcatctacacacgaacctctggaacatgtaccatcttcagatgc 1607 Query: 269 attcctttagtgtcccattgagttctgaaatccttgtgcaagttcagcagccagagcttc 328 || |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 1606 atcccttcagtgtcccattgagttctgaagtccttgtgcaagctcagcagccagagcttc 1547 Query: 329 ttaagggagcgaaggaattcaatgccttgagggactttatcgagcttcaacagcgataca 388 ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||| Sbjct: 1546 ttaagggagcgaagggattcaatgccttgggggactttattgagcttcaacagcgacaca 1487 Query: 389 ttgtacaaaccatcaatgcagggaagag 416 ||||||||||||||||||||||||||| Sbjct: 1486 atgtacaaaccatcaatgcagggaagag 1459
>gb|AF456245.1| Oryza sativa (japonica cultivar-group) NBS-LRR-like protein (YR5) mRNA, complete cds Length = 3134 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Minus Query: 228 tctagacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccatt 287 |||| ||||||| |||||||||||| | |||||||||||||||| || ||| ||||| Sbjct: 2866 tctaaacacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccatt 2807 Query: 288 gagttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaaggaatt 347 ||||| |||| ||| |||||| || ||| |||||||||||||| |||| |||||| | | Sbjct: 2806 gagttttgaagtccctgtgcaggtacagaagccagagcttcttcagggtccgaagggact 2747 Query: 348 caatgccttgagggactttatcgagctt 375 ||||||| | ||||||| |||| ||||| Sbjct: 2746 caatgccctcagggactatatccagctt 2719
>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic sequence, complete sequence Length = 138826 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 319 ccagagcttcttaagggagcgaaggaattcaatgccttgagggactttatcgagcttcaa 378 |||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||| | Sbjct: 40002 ccagagcttcttcagggaggcaagggattcaatgccttgagggactttatccagcttcca 39943 Query: 379 cagcgatacattgtacaaaccatcaatgcagggaag 414 || |||||| |||| ||||| |||||||| ||||| Sbjct: 39942 caatgatacaatgtataaaccttcaatgcatggaag 39907 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 228 tctagacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccatt 287 |||| ||||||| |||||||||||| | |||||||||||||||| || ||| ||||| Sbjct: 13349 tctaaacacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccatt 13408 Query: 288 gagttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaaggaatt 347 ||||| |||| ||| |||||| || ||| |||||||||||||| |||| |||||| | | Sbjct: 13409 gagttttgaagtccctgtgcaggtacagaagccagagcttcttcagggtccgaagggact 13468 Query: 348 caatgccttgagggactttatcgagctt 375 ||||||| | ||||||| |||| ||||| Sbjct: 13469 caatgccctcagggactatatccagctt 13496 Score = 79.8 bits (40), Expect = 6e-12 Identities = 109/132 (82%) Strand = Plus / Minus Query: 283 ccattgagttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaag 342 ||||||||| |||| || ||||||| || || || ||||||||||| |||||| ||| Sbjct: 89852 ccattgagtcttgaagtctttgtgcaggtccatcaaacagagcttctttagggaggcaag 89793 Query: 343 gaattcaatgccttgagggactttatcgagcttcaacagcgatacattgtacaaaccatc 402 | ||||||||||||||||||||||||| |||||| || |||||| |||| ||||| || Sbjct: 89792 ggattcaatgccttgagggactttatccagcttccgcaatgatacaatgtataaaccttc 89733 Query: 403 aatgcagggaag 414 ||||| ||||| Sbjct: 89732 gatgcatggaag 89721 Score = 60.0 bits (30), Expect = 6e-06 Identities = 78/94 (82%) Strand = Plus / Plus Query: 321 agagcttcttaagggagcgaaggaattcaatgccttgagggactttatcgagcttcaaca 380 |||||||||| |||||| |||| | ||||||||||||||||| || || |||||| || Sbjct: 19882 agagcttcttcagggagttaagggactcaatgccttgagggaccttgtccagcttcggca 19941 Query: 381 gcgatacattgtacaaaccatcaatgcagggaag 414 || | ||| ||||||||| |||||||| ||||| Sbjct: 19942 gcaacacaatgtacaaacattcaatgcatggaag 19975
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 319 ccagagcttcttaagggagcgaaggaattcaatgccttgagggactttatcgagcttcaa 378 |||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||| | Sbjct: 6580792 ccagagcttcttcagggaggcaagggattcaatgccttgagggactttatccagcttcca 6580733 Query: 379 cagcgatacattgtacaaaccatcaatgcagggaag 414 || |||||| |||| ||||| |||||||| ||||| Sbjct: 6580732 caatgatacaatgtataaaccttcaatgcatggaag 6580697 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 228 tctagacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccatt 287 |||| ||||||| |||||||||||| | |||||||||||||||| || ||| ||||| Sbjct: 6554139 tctaaacacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccatt 6554198 Query: 288 gagttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaaggaatt 347 ||||| |||| ||| |||||| || ||| |||||||||||||| |||| |||||| | | Sbjct: 6554199 gagttttgaagtccctgtgcaggtacagaagccagagcttcttcagggtccgaagggact 6554258 Query: 348 caatgccttgagggactttatcgagctt 375 ||||||| | ||||||| |||| ||||| Sbjct: 6554259 caatgccctcagggactatatccagctt 6554286 Score = 79.8 bits (40), Expect = 6e-12 Identities = 109/132 (82%) Strand = Plus / Minus Query: 283 ccattgagttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaag 342 ||||||||| |||| || ||||||| || || || ||||||||||| |||||| ||| Sbjct: 6630642 ccattgagtcttgaagtctttgtgcaggtccatcaaacagagcttctttagggaggcaag 6630583 Query: 343 gaattcaatgccttgagggactttatcgagcttcaacagcgatacattgtacaaaccatc 402 | ||||||||||||||||||||||||| |||||| || |||||| |||| ||||| || Sbjct: 6630582 ggattcaatgccttgagggactttatccagcttccgcaatgatacaatgtataaaccttc 6630523 Query: 403 aatgcagggaag 414 ||||| ||||| Sbjct: 6630522 gatgcatggaag 6630511 Score = 60.0 bits (30), Expect = 6e-06 Identities = 78/94 (82%) Strand = Plus / Plus Query: 321 agagcttcttaagggagcgaaggaattcaatgccttgagggactttatcgagcttcaaca 380 |||||||||| |||||| |||| | ||||||||||||||||| || || |||||| || Sbjct: 6560672 agagcttcttcagggagttaagggactcaatgccttgagggaccttgtccagcttcggca 6560731 Query: 381 gcgatacattgtacaaaccatcaatgcagggaag 414 || | ||| ||||||||| |||||||| ||||| Sbjct: 6560732 gcaacacaatgtacaaacattcaatgcatggaag 6560765 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 326 ttcttaagggagcgaaggaattcaatgccttgagggac 363 ||||||||||||| |||| |||||||||||| |||||| Sbjct: 6455151 ttcttaagggagctaagggattcaatgccttcagggac 6455188 Score = 42.1 bits (21), Expect = 1.4 Identities = 63/77 (81%) Strand = Plus / Minus Query: 232 gacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgagt 291 |||||| | ||||||||||||| | ||||| || |||||||| || | ||||| |||| Sbjct: 6806731 gacacgcaactctggaacatgttgcatcttttgttgcattccatttttttcccactgaga 6806672 Query: 292 tctgaaatccttgtgca 308 |||||||| ||| |||| Sbjct: 6806671 tctgaaattcttatgca 6806655
>emb|AJ507098.1|HVU507098 Hordeum vulgare mRNA for NBS-LRR disease resistance protein homologue (rga S-L8 gene) Length = 3261 Score = 95.6 bits (48), Expect = 1e-16 Identities = 150/184 (81%) Strand = Plus / Minus Query: 231 agacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgag 290 ||||||||||||| ||||||| | |||||||| |||||||| || ||||||| |||| Sbjct: 2968 agacacgaacctcctgaacatgcaccatcttctgctgcattccgttcttgtcccactgag 2909 Query: 291 ttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaaggaattcaa 350 || |||| || |||||| || || |||||||||||| ||||||| |||| |||||| Sbjct: 2908 ttttgaagcccccatgcaagcccaccaaccagagcttcttcagggagctaagggattcaa 2849 Query: 351 tgccttgagggactttatcgagcttcaacagcgatacattgtacaaaccatcaatgcagg 410 ||||||||||||| ||||| |||||| ||| ||| ||| |||||||| || ||||| | Sbjct: 2848 tgccttgagggaccttatccagcttcgacaacgacacaacatacaaaccttcgatgcacg 2789 Query: 411 gaag 414 |||| Sbjct: 2788 gaag 2785
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 319 ccagagcttcttaagggagcgaaggaattcaatgccttgagggactttatcgagcttcaa 378 |||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||| | Sbjct: 6647259 ccagagcttcttcagggaggcaagggattcaatgccttgagggactttatccagcttcca 6647200 Query: 379 cagcgatacattgtacaaaccatcaatgcagggaag 414 || |||||| |||| ||||| |||||||| ||||| Sbjct: 6647199 caatgatacaatgtataaaccttcaatgcatggaag 6647164 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 228 tctagacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccatt 287 |||| ||||||| |||||||||||| | |||||||||||||||| || ||| ||||| Sbjct: 6620606 tctaaacacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccatt 6620665 Query: 288 gagttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaaggaatt 347 ||||| |||| ||| |||||| || ||| |||||||||||||| |||| |||||| | | Sbjct: 6620666 gagttttgaagtccctgtgcaggtacagaagccagagcttcttcagggtccgaagggact 6620725 Query: 348 caatgccttgagggactttatcgagctt 375 ||||||| | ||||||| |||| ||||| Sbjct: 6620726 caatgccctcagggactatatccagctt 6620753 Score = 79.8 bits (40), Expect = 6e-12 Identities = 109/132 (82%) Strand = Plus / Minus Query: 283 ccattgagttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaag 342 ||||||||| |||| || ||||||| || || || ||||||||||| |||||| ||| Sbjct: 6697109 ccattgagtcttgaagtctttgtgcaggtccatcaaacagagcttctttagggaggcaag 6697050 Query: 343 gaattcaatgccttgagggactttatcgagcttcaacagcgatacattgtacaaaccatc 402 | ||||||||||||||||||||||||| |||||| || |||||| |||| ||||| || Sbjct: 6697049 ggattcaatgccttgagggactttatccagcttccgcaatgatacaatgtataaaccttc 6696990 Query: 403 aatgcagggaag 414 ||||| ||||| Sbjct: 6696989 gatgcatggaag 6696978 Score = 60.0 bits (30), Expect = 6e-06 Identities = 78/94 (82%) Strand = Plus / Plus Query: 321 agagcttcttaagggagcgaaggaattcaatgccttgagggactttatcgagcttcaaca 380 |||||||||| |||||| |||| | ||||||||||||||||| || || |||||| || Sbjct: 6627139 agagcttcttcagggagttaagggactcaatgccttgagggaccttgtccagcttcggca 6627198 Query: 381 gcgatacattgtacaaaccatcaatgcagggaag 414 || | ||| ||||||||| |||||||| ||||| Sbjct: 6627199 gcaacacaatgtacaaacattcaatgcatggaag 6627232 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 326 ttcttaagggagcgaaggaattcaatgccttgagggac 363 ||||||||||||| |||| |||||||||||| |||||| Sbjct: 6521618 ttcttaagggagctaagggattcaatgccttcagggac 6521655 Score = 42.1 bits (21), Expect = 1.4 Identities = 63/77 (81%) Strand = Plus / Minus Query: 232 gacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgagt 291 |||||| | ||||||||||||| | ||||| || |||||||| || | ||||| |||| Sbjct: 6873198 gacacgcaactctggaacatgttgcatcttttgttgcattccatttttttcccactgaga 6873139 Query: 292 tctgaaatccttgtgca 308 |||||||| ||| |||| Sbjct: 6873138 tctgaaattcttatgca 6873122
>dbj|AK101773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064L16, full insert sequence Length = 3374 Score = 79.8 bits (40), Expect = 6e-12 Identities = 109/132 (82%) Strand = Plus / Minus Query: 283 ccattgagttctgaaatccttgtgcaagttcagcagccagagcttcttaagggagcgaag 342 ||||||||| |||| || ||||||| || || || ||||||||||| |||||| ||| Sbjct: 2961 ccattgagtcttgaagtctttgtgcaggtccatcaaacagagcttctttagggaggcaag 2902 Query: 343 gaattcaatgccttgagggactttatcgagcttcaacagcgatacattgtacaaaccatc 402 | ||||||||||||||||||||||||| |||||| || |||||| |||| ||||| || Sbjct: 2901 ggattcaatgccttgagggactttatccagcttccgcaatgatacaatgtataaaccttc 2842 Query: 403 aatgcagggaag 414 ||||| ||||| Sbjct: 2841 gatgcatggaag 2830
>gb|AY986485.1| Zea mays NBS-LRR type disease resistance protein (MRPR1) mRNA, complete cds Length = 3256 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 321 agagcttcttaagggagcgaaggaattcaatgccttgagggactttatcgagcttcaaca 380 |||||||||| ||||||||||| ||||||||||||||||||| ||||| |||| || || Sbjct: 2872 agagcttcttcagggagcgaagcgattcaatgccttgagggaccttatccagctccacca 2813 Query: 381 gcgatacattgtacaaaccatcaatgca 408 | || ||| |||||| ||| || ||||| Sbjct: 2812 gtgacacaatgtacagaccttcgatgca 2785
>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16, complete sequence Length = 137872 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 326 ttcttaagggagcgaaggaattcaatgccttgagggac 363 ||||||||||||| |||| |||||||||||| |||||| Sbjct: 126545 ttcttaagggagctaagggattcaatgccttcagggac 126582
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 326 ttcttaagggagcgaaggaattcaatgccttgagggac 363 ||||||||||||| |||| |||||||||||| |||||| Sbjct: 89079 ttcttaagggagctaagggattcaatgccttcagggac 89042
>gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, complete sequence Length = 153281 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 atctttgagggataaatttgt 95 ||||||||||||||||||||| Sbjct: 37479 atctttgagggataaatttgt 37499
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 42.1 bits (21), Expect = 1.4 Identities = 63/77 (81%) Strand = Plus / Plus Query: 232 gacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgagt 291 |||||| | ||||||||||||| | ||||| || |||||||| || | ||||| |||| Sbjct: 80120 gacacgcaactctggaacatgttgcatcttttgttgcattccatttttttcccactgaga 80179 Query: 292 tctgaaatccttgtgca 308 |||||||| ||| |||| Sbjct: 80180 tctgaaattcttatgca 80196
>gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, complete sequence Length = 174965 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 atctttgagggataaatttgt 95 ||||||||||||||||||||| Sbjct: 133080 atctttgagggataaatttgt 133100
>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic sequence, complete sequence Length = 144544 Score = 42.1 bits (21), Expect = 1.4 Identities = 63/77 (81%) Strand = Plus / Minus Query: 232 gacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgagt 291 |||||| | ||||||||||||| | ||||| || |||||||| || | ||||| |||| Sbjct: 137579 gacacgcaactctggaacatgttgcatcttttgttgcattccatttttttcccactgaga 137520 Query: 292 tctgaaatccttgtgca 308 |||||||| ||| |||| Sbjct: 137519 tctgaaattcttatgca 137503
>gb|AC106854.5| Homo sapiens chromosome 18, clone CTD-2302G2, complete sequence Length = 116879 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 gtcccattgagttctgaaatccttg 304 ||||| ||||||||||||||||||| Sbjct: 97607 gtccctttgagttctgaaatccttg 97583
>gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, complete sequence Length = 208310 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 gtcccattgagttctgaaatccttg 304 ||||| ||||||||||||||||||| Sbjct: 166668 gtccctttgagttctgaaatccttg 166692
>gb|AC105357.7| Homo sapiens chromosome 11, clone RP11-321F11, complete sequence Length = 167772 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 attgtacaaaccatcaatgcagggaaga 415 |||||| | ||||||||||||||||||| Sbjct: 132701 attgtaaagaccatcaatgcagggaaga 132728
>emb|AL023874.1|DMC100G10 Drosophila melanogaster cosmid clone 100G10 Length = 21489 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aggtcaacaaaaaatacata 21 |||||||||||||||||||| Sbjct: 806 aggtcaacaaaaaatacata 825
>emb|AL603907.12| Mouse DNA sequence from clone RP23-139D10 on chromosome 11 Contains a novel gene, complete sequence Length = 226006 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tgcaagttcagcagccagag 324 |||||||||||||||||||| Sbjct: 13337 tgcaagttcagcagccagag 13356
>gb|AY118458.1| Drosophila melanogaster GH01006 full insert cDNA Length = 3105 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aggtcaacaaaaaatacata 21 |||||||||||||||||||| Sbjct: 3062 aggtcaacaaaaaatacata 3043
>gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 161569 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aggtcaacaaaaaatacata 21 |||||||||||||||||||| Sbjct: 34295 aggtcaacaaaaaatacata 34314
>ref|NM_206616.1| Drosophila melanogaster CG2658-RB, transcript variant B (CG2658), mRNA Length = 3088 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aggtcaacaaaaaatacata 21 |||||||||||||||||||| Sbjct: 3062 aggtcaacaaaaaatacata 3043
>ref|NM_130661.1| Drosophila melanogaster CG2658-RA, transcript variant A (CG2658), mRNA Length = 3033 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aggtcaacaaaaaatacata 21 |||||||||||||||||||| Sbjct: 3008 aggtcaacaaaaaatacata 2989
>gb|AC096897.4| Homo sapiens BAC clone RP11-323K21 from 4, complete sequence Length = 13000 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 388 attgtacaaaccatcaatgcagggaaga 415 |||||| |||||||||||||| |||||| Sbjct: 1303 attgtaaaaaccatcaatgcaaggaaga 1276
>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete sequence Length = 309053 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aggtcaacaaaaaatacata 21 |||||||||||||||||||| Sbjct: 60899 aggtcaacaaaaaatacata 60918
>dbj|AP006442.2| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-105F10, complete sequence Length = 134532 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 attgtacaaaccatcaatgcagggaaga 415 |||||| | ||||||||||||||||||| Sbjct: 62984 attgtaaagaccatcaatgcagggaaga 63011
>gb|AC004054.1|AC004054 Homo sapiens chromosome 4 clone B220G8 map 4q21, complete sequence Length = 112184 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 388 attgtacaaaccatcaatgcagggaaga 415 |||||| |||||||||||||| |||||| Sbjct: 111487 attgtaaaaaccatcaatgcaaggaaga 111460 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,563,201 Number of Sequences: 3902068 Number of extensions: 3563201 Number of successful extensions: 65546 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65423 Number of HSP's gapped (non-prelim): 119 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)