>HXA11_MOUSE (P31311) Homeobox protein Hox-A11 (Hox-1.9)|
          Length = 313

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 129 KGSCLRNFHCPACIFSVASPPITSSMRSLKMDLSMSKTMPCSSPSGLPQ 275
           +G C  N + P+C + V+ P   SS+ S       S+ M  S  S LPQ
Sbjct: 7   RGPCSSNMYLPSCTYYVSGPDF-SSLPSFLPQTPSSRPMTYSYSSNLPQ 54

>HXA11_HUMAN (P31270) Homeobox protein Hox-A11 (Hox-1I)|
          Length = 313

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 129 KGSCLRNFHCPACIFSVASPPITSSMRSLKMDLSMSKTMPCSSPSGLPQ 275
           +G C  N + P+C + V+ P   SS+ S       S+ M  S  S LPQ
Sbjct: 6   RGPCSSNMYLPSCTYYVSGPDF-SSLPSFLPQTPSSRPMTYSYSSNLPQ 53

>Y1740_ACIAD (Q6FBI2) UPF0343 protein ACIAD1740|
          Length = 294

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
 Frame = +3

Query: 216 KMDLSMSKTMPCSS-------PSGLPQSFISYNASSDNGMFXXXXXXEHFAAKLSDRSRS 374
           K+D+S S T PCS+        +G    F S N      +          A   S RS +
Sbjct: 142 KLDISYSSTCPCSAALSRQIIKNGFKADFSSQNLIPSADIEAWLEQYATLATPHSQRSIA 201

Query: 375 TSVHNSLKRRHPLNFLD 425
           T V       H +NF+D
Sbjct: 202 TVVVQPFDYAHDINFVD 218

>CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)|
           (T-cad)
          Length = 712

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 102 NSHIQFILLKGSCLRNFHCPACIFSVASPPITSSMRSLKMDLSMSK--TMPCSSPSGL 269
           N+H Q +LL+     N++ P  +     PP+T++   LK+ +   K   M CS+   L
Sbjct: 639 NTHAQVVLLQNLKKANYNIPISVTDSGKPPLTNN-TELKLQVCSCKKSRMDCSASDAL 695

>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
           (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
           MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 135 SCLRNFHCPACIFSVASPPITSSMRSL-KMDLSMSKTMPCSSP 260
           S L+NF  P+C F+   P   S ++ L K+DLS +  + CS P
Sbjct: 210 SLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYN-PLKCSIP 251

>Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163|
          Length = 1693

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +2

Query: 59   LHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPLSSLHLLCSLATYNLVNEVPENGPLNV 235
            L  L+A +  G D Q+  +  T   Q P+  P  SLH +  LA  N  N     GP+ V
Sbjct: 959  LEALLAAVKTGQDLQKLVTPETPLVQYPSLAPWLSLHSI--LARINECNRCHHEGPVTV 1015

>ENGA_RHILO (Q986D9) GTP-binding protein engA|
          Length = 479

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = +3

Query: 186 PPITSSMRSLKMDLSMSKTMP------CSSPSGLPQSFISYNASSDNGMFXXXXXXEHFA 347
           PP  +  R     ++ +KT P      CS P  +PQS++ Y ++S    F         A
Sbjct: 404 PPAVAGRRLKVKYVTQAKTRPPGFVVQCSRPDAMPQSYVRYLSNSLREAFDMPGVPIRIA 463

Query: 348 AKLSD 362
            + SD
Sbjct: 464 LRTSD 468

>RRMJ3_RAT (Q5RJT2) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 829

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 337 SEEDEDENIPLSEDALYEMKDWGSPEGELQGMVLDIERSIFRDLIDEVIGGEA--TEKMQ 164
           ++ED  E +P+ +   Y + D   PEG   G V+   +   RDLID      A   E+ +
Sbjct: 627 ADEDGFEVVPIEDPVKYRILD---PEGLALGAVIASSKKAKRDLIDNSFNRYAFNEEEEE 683

Query: 163 AGQWKLRRQ 137
             +W ++ +
Sbjct: 684 LPEWFVQEE 692

>LAR_CAEEL (Q9BMN8) Tyrosine-protein phosphatase Lar-like precursor (EC|
           3.1.3.48) (Protein-tyrosine phosphate 3)
          Length = 2200

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 180 ASPPITSSMRSLKMDLSMSKTMPCSSPSGLPQSFISY 290
           A+ P++   RSL  D  + K  PC  P+GL   +  Y
Sbjct: 437 ATAPVSPQARSLNRDSILVKWGPCEQPNGLITGYKVY 473

>RRMJ3_MOUSE (Q9DBE9) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 838

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 337 SEEDEDENIPLSEDALYEMKDWGSPEGELQGMVLDIERSIFRDLID 200
           ++ED  E +P+ +   Y + D   PEG   G V+   +   RDLID
Sbjct: 635 ADEDGFEVVPIQDPVKYRILD---PEGLALGAVIASSKKAKRDLID 677

>YHN8_YEAST (P38799) Hypothetical 63.3 kDa protein in NMD2-IRE1 intergenic|
           region
          Length = 552

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
 Frame = +2

Query: 20  FHIIQSSEKKYKGLHLLVAKIPNGNDYQQS-----YSVYTTERQLPTQFPLSSLHLLCSL 184
           F II +S KK   +  L +K+  G++   S      + + TE  LP+   L SL +L SL
Sbjct: 33  FDIISTSSKK--NVIPLASKMEVGSNEDVSSMGNFINKFYTEYSLPSHKVLQSLRVLFSL 90

Query: 185 A--TYNLVNEVPENGPLNVQNHAL*LTFRATPIFHLIQCILR*WYVFILILFGAF 343
           A  TY +  E+     + V      +TF  T ++ L   +L     FILILF  F
Sbjct: 91  AMMTYTVTIEI-ILWQIKVAGMDKEVTFITTWVWPLTAIMLS----FILILFQPF 140

>DP2S_METTH (O27456) DNA polymerase II small subunit (EC 2.7.7.7) (Pol II)|
          Length = 482

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 11  LYFFHIIQSSEKKYKGLHLL-VAKIPNGNDYQQSYSVYTTERQLP 142
           L+  H+  ++ KKYKG+HL+      +  ++Q+ Y++  T  Q+P
Sbjct: 425 LHTGHVHINAYKKYKGVHLINSGTFQSQTEFQKIYNIVPTCGQVP 469

>RRMJ3_HUMAN (Q8IY81) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 847

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 337 SEEDEDENIPLSEDALYEMKDWGSPEGELQGMVLDIERSIFRDLID 200
           S++D  E +P+ + A + + D   PEG   G V+   +   RDLID
Sbjct: 644 SDDDGFEIVPIEDPAKHRILD---PEGLALGAVIASSKKAKRDLID 686

>GLB_NASMU (P31331) Globin (Myoglobin)|
          Length = 147

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 226 RSIFRDLIDEVIGGEATEKMQA 161
           RSIF + +D+  GG+ATE M++
Sbjct: 112 RSIFGEFLDKATGGKATESMKS 133

>MIG1_KLUMA (P52288) Regulatory protein MIG1|
          Length = 543

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 22/94 (23%), Positives = 40/94 (42%)
 Frame = +3

Query: 129 KGSCLRNFHCPACIFSVASPPITSSMRSLKMDLSMSKTMPCSSPSGLPQSFISYNASSDN 308
           K + L N + P+  F +  PP+TSS+ S  + L     +  + P   P +     A+++N
Sbjct: 250 KSTTLLNNNTPSFKF-IDRPPLTSSLSSPALSLVSQSPVAGAGPGFGPANGNGNGAANNN 308

Query: 309 GMFXXXXXXEHFAAKLSDRSRSTSVHNSLKRRHP 410
           G+           + LS   R T +    + + P
Sbjct: 309 GLLLPRPTSRPKLSALSTLKRMTPLSQVSEPQQP 342

>SPB1_MAGGR (Q52C47) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)|
           (2'-O-ribose RNA methyltransferase)
           (S-adenosyl-L-methionine-dependent methyltransferase)
          Length = 884

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 427 RSRKLSGWRLFKELCTEVDRLLSESLAAKCSEEDEDENI 311
           R+R      +FKEL  ++D  + E L A  + EDED ++
Sbjct: 569 RARAFFNQDIFKELDGDMDEPMDEELRAALAGEDEDADM 607

>RRMJ3_PONPY (Q5RAS1) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 841

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 337 SEEDEDENIPLSEDALYEMKDWGSPEGELQGMVLDIERSIFRDLID 200
           S++D  E +P+ + A + + D   PEG   G V+   +   RDLID
Sbjct: 638 SDDDGFEIVPIEDPAKHRILD---PEGLALGAVIASSKKAKRDLID 680

>BLM_DROME (Q9VGI8) Bloom syndrome protein homolog (EC 3.6.1.-) (Dmblm)|
           (Mutagen-sensitive protein 309) (RecQ helicase homolog)
          Length = 1487

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 400 LFKELCTEVDRLLSESLAAKCSEEDEDENIPLSEDALYEMKDWGSPEGELQGMVLDIE 227
           L  +LC E D  L++S+      E+E  N P        M D    E +L+G++ +IE
Sbjct: 552 LVHDLCEEPDDYLAQSMMLDGDLEEEQLNGPTQGTTTSGMDD---DEDDLEGLLAEIE 606


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,401,914
Number of Sequences: 219361
Number of extensions: 1299446
Number of successful extensions: 4195
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4194
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)