>E6_GOSHI (Q01197) Protein E6|
          Length = 238

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 132 GWASCFRFTYTTYKGSEMIHTQQNQRLRPQLSSKKKKTYYNVGSESEFSPN*WDKSSGKI 311
           GW++        Y G+   +  + Q +      +  K YY+V SE+ + PN +D S G  
Sbjct: 147 GWSTKENQNNNYYNGNNGYNNGEKQGMSDTRYLENGKYYYDVKSENNYYPNRFDNSRGVA 206

Query: 312 AR 317
           +R
Sbjct: 207 SR 208

>V243_FOWPV (Q9J4Z7) Putative ankyrin repeat protein FPV243|
          Length = 262

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = -3

Query: 379 YQ*TDRWRILA------IFCYIDRKRILAIFPDDLSH*LGENSDSE 260
           Y+ TD+W IL       I CY+D K +  I+   L +     SD +
Sbjct: 212 YEYTDKWMILPQEIKINILCYLDNKELDYIYESSLENNKNNTSDKK 257

>RBP1_PLAVB (Q00798) Reticulocyte binding protein 1 precursor|
          Length = 2833

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
 Frame = +1

Query: 28   STSNLFSFNNQHEFLAVNLEKEQNGFNQEKKNTE*---AGHLVFGLRIQHIKARK*YIHN 198
            S +N   +N   + L   ++  +    +E   TE     G     L ++ ++ +   I+ 
Sbjct: 958  SINNCKKYNTDIDLLRSKIKTLREEVQKEIAETEGDKVVGENTTALLLKSLRDKMGKINE 1017

Query: 199  KTNDSGLNSA-VRKKKLITMWAQNLSSLLTNGTNHQGKLQESSFDQCNRKLLEFSTDQFT 375
            K ND  LNS   +K+ L+  ++++ S +      H  K Q+   D  NR       D++ 
Sbjct: 1018 KLNDGRLNSLDTKKEDLLKFYSESKSKI------HLSKDQKGPQDPLNR------IDEWE 1065

Query: 376  DIK 384
            DIK
Sbjct: 1066 DIK 1068

>ENO_NEOFR (P42894) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 436

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 153 FTYTTYKGSEMIHTQQNQRLRPQLSSKKKKTYYNVGSESEFSPN*WDKSSG 305
           FT     GSE+ H      L+  + +K  +   NVG E  F+PN  D   G
Sbjct: 179 FTEALKMGSEVYHA-----LKSVIKAKYGQDACNVGDEGGFAPNIQDNKEG 224

>ENO_CUNEL (O74286) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase) (Fragment)
          Length = 436

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 174 GSEMIHTQQNQRLRPQLSSKKKKTYYNVGSESEFSPN*WDKSSG 305
           GSE+ HT     L+  ++ K  +   NVG E  F+PN  D   G
Sbjct: 186 GSEVYHT-----LKKVINEKYGQDATNVGDEGGFAPNIQDNQEG 224

>ENOB_RAT (P15429) Beta-enolase (EC 4.2.1.11) (2-phospho-D-glycerate|
           hydro-lyase) (Muscle-specific enolase) (MSE) (Skeletal
           muscle enolase) (Enolase 3)
          Length = 433

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 168 YKGSEMIHTQQNQRLRPQLSSKKKKTYYNVGSESEFSPN 284
           ++GS+ I  +    L+  + +K  K   NVG E  F+PN
Sbjct: 177 FQGSQRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPN 215

>NCAP_IBVV1 (Q96605) Nucleocapsid protein (N structural protein) (NC)|
          Length = 409

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 90  RAEWFQSRKEKHRIGWASCFRFTYTTYKGSEMIHTQQNQRLRPQ 221
           +A WFQS KEK R G       T  T++GS +     N  ++PQ
Sbjct: 33  QASWFQSLKEKKRTG-------TPPTFEGSGV---PDNSNVKPQ 66

>ZNHI3_MACMU (Q6UIM1) Zinc finger HIT domain-containing protein 3 (Thyroid|
           receptor-interacting protein 3) (TRIP-3) (Thyroid
           hormone receptor interactor 3) (Fragment)
          Length = 147

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 170 ICCIRKPKTRCPAYSVFFFS*LKPFCS 90
           + C+ KPK RCPA  V       P+CS
Sbjct: 4   VICLEKPKYRCPACRV-------PYCS 23

>GTR1_YEAST (Q00582) GTP-binding protein GTR1|
          Length = 310

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 214 GLNSAVRKKKLITMWAQNLSSLLTNGTNHQGKLQE 318
           G  +++  + L   W+Q + SL+ N +NHQ  L++
Sbjct: 161 GFPTSIWDESLYKAWSQIVCSLIPNMSNHQSNLKK 195

>ZNHI3_HUMAN (Q15649) Zinc finger HIT domain-containing protein 3 (Thyroid|
           receptor-interacting protein 3) (TRIP-3) (Thyroid
           hormone receptor interactor 3) (HNF-4a coactivator)
          Length = 155

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 170 ICCIRKPKTRCPAYSVFFFS*LKPFCS 90
           + C+ KPK RCPA  V       P+CS
Sbjct: 12  VICLEKPKYRCPACRV-------PYCS 31

>POL_SIVMK (P05897) Pol polyprotein [Contains: Protease (Retropepsin) (EC|
           3.4.23.-); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
          Length = 1054

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 187 YIHNKTNDSGLNSAVRKKKLITMWA 261
           Y+H  T+ +G N A ++ K++T WA
Sbjct: 870 YLHIYTHSNGANFASQEVKMVTWWA 894


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,724,871
Number of Sequences: 219361
Number of extensions: 933372
Number of successful extensions: 2177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2177
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)