ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC123983.8| Pan troglodytes clone rp43-42n4, complete sequence 44 0.35
2emb|AL808032.1|CNS08CA7 BAC 30B15 of library A from Tetraodon ni... 44 0.35
3gb|AC168060.4| Mus musculus BAC clone RP23-305A9 from chromosome... 42 1.4
4gb|AC102050.13| Mus musculus chromosome 8, clone RP23-389O4, com... 42 1.4
5gb|AF030172.1| Arabidopsis thaliana defender against cell death ... 42 1.4
6gb|AC125344.2| Mus musculus BAC clone RP24-332H21 from 12, compl... 42 1.4
7gb|AC027510.7| Homo sapiens chromosome 18, clone RP11-118I2, com... 42 1.4
8emb|AL672234.27| Mouse DNA sequence from clone RP23-356I16 on ch... 42 1.4
9gb|AC005314.3| Arabidopsis thaliana chromosome 2 clone T32F12 ma... 42 1.4
10dbj|AK140475.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 42 1.4
11gb|AY049271.1| Arabidopsis thaliana At2g35520/T32F12.10 mRNA, co... 42 1.4
12gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 1.4
13gb|AC013733.10| Homo sapiens BAC clone RP11-553I15 from 2, compl... 42 1.4
14gb|AC073977.6| Homo sapiens BAC clone RP11-253H16 from 2, comple... 42 1.4
15emb|Y17609.1|ATH17609 Arabidopsis thaliana dad1e gene, exons 1 to 5 42 1.4
16emb|AL132639.4|CNS01DT4 Human chromosome 14 DNA sequence BAC R-4... 42 1.4
17dbj|AK116327.1| Ciona intestinalis cDNA, clone:citb033g13, full ... 42 1.4
18gb|AC160992.2| Mus musculus BAC clone RP23-147I23 from chromosom... 40 5.5
19gb|BT018652.1| Zea mays clone EL01N0506A07.d mRNA sequence 40 5.5
20gb|AC183762.2| Pan troglodytes BAC clone CH251-684C16 from chrom... 40 5.5
21gb|AC183595.3| Pan troglodytes BAC clone CH251-641G8 from chromo... 40 5.5
22gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, co... 40 5.5
23ref|NM_053530.2| Rattus norvegicus twist gene homolog 1 (Drosoph... 40 5.5
24gb|AC182469.3| Pan troglodytes BAC clone CH251-496G17 from chrom... 40 5.5
25gb|AC183765.3| Pan troglodytes BAC clone CH251-521I2 from chromo... 40 5.5
26gb|AC183918.1| Homo sapiens BAC clone RP11-170N9 from chromosome... 40 5.5
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
28gb|AC183532.3| Pan troglodytes BAC clone CH251-569N9 from chromo... 40 5.5
29gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete... 40 5.5
30gb|AC134878.3| Homo sapiens BAC clone RP11-131M6 from Y, complet... 40 5.5
31gb|AY505564.1| Homo sapiens catenin (cadherin-associated protein... 40 5.5
32emb|BX649221.3| Chicken DNA sequence from clone WAG-43K7, comple... 40 5.5
33emb|AL138710.16| Human DNA sequence from clone RP11-469A21 on ch... 40 5.5
34gb|AC138772.4| Homo sapiens BAC clone RP11-1345A16 from UL, comp... 40 5.5
35gb|AC145212.1| Homo sapiens BAC clone RP11-1368F8 from UL, compl... 40 5.5
36emb|AL049709.18|HSDJ18C9 Human DNA sequence from clone RP1-18C9 ... 40 5.5
37emb|AL009028.1|HS164L12 Human DNA sequence from clone RP1-164L12... 40 5.5
38emb|AL645476.26| Mouse DNA sequence from clone RP23-70L6 on chro... 40 5.5
39gb|AC117395.5| Homo sapiens 3 BAC RP11-651P23 (Roswell Park Canc... 40 5.5
40emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chro... 40 5.5
41emb|CR589946.2| Human DNA sequence from clone WI2-679O21 on chro... 40 5.5
42emb|CR381535.11| Human DNA sequence from clone bP-2154M18 on chr... 40 5.5
43gb|AC022069.6| Homo sapiens, clone RP11-107K17, complete sequence 40 5.5
44gb|AC114977.2| Homo sapiens chromosome 5 clone RP11-49C20, compl... 40 5.5
45gb|AC007996.11| Homo sapiens chromosome 18, clone RP11-9E17, com... 40 5.5
46gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, comp... 40 5.5
47emb|CR381670.5| Human DNA sequence from clone bP-2189O9 on chrom... 40 5.5
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
49gb|AC138776.2| Homo sapiens BAC clone RP11-1277N13 from UL, comp... 40 5.5
50gb|AC138777.3| Homo sapiens BAC clone RP11-1220P14 from 2, compl... 40 5.5
51gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 40 5.5
52gb|AC097374.3| Homo sapiens BAC clone RP11-71B7 from 2, complete... 40 5.5
53dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 5.5
54gb|AC148028.2| Homo sapiens chromosome UNKNOWN clone RP11-238G20... 40 5.5
55gb|AY221626.1| Clostridium perfringens putative azoreductase gen... 40 5.5
56emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on ch... 40 5.5
57emb|AL354822.8| Human DNA sequence from clone RP11-474C22 on chr... 40 5.5
58emb|BX572084.5| Human DNA sequence from clone RP11-423O2 on chro... 40 5.5
59gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete se... 40 5.5
60gb|AC026762.17| Homo sapiens 3 BAC RP11-373C21 (Roswell Park Can... 40 5.5
61gb|AC154868.3| Monodelphis domestica, clone XX-211C4, complete s... 40 5.5
62gb|AC006948.4|AC006948 Homo sapiens chromosome 17, clone hRPK.33... 40 5.5
63dbj|AP001153.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.5
64dbj|AP001528.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.5
65emb|AL355793.6| Human DNA sequence from clone RP4-694M10 on chro... 40 5.5
66emb|BX004987.9| Human DNA sequence from clone RP11-435B5 on chro... 40 5.5
67gb|AC140349.4| Mus musculus BAC clone RP24-250I16 from 12, compl... 40 5.5
68dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete ge... 40 5.5
69gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 5.5
70gb|AC080037.11| Homo sapiens chromosome 17, clone CTD-3010D24, c... 40 5.5
71dbj|AP001931.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.5 
>gb|AC123983.8| Pan troglodytes clone rp43-42n4, complete sequence
          Length = 187806

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 386   agacatccattgaaaaagaagg 407
             ||||||||||||||||||||||
Sbjct: 43464 agacatccattgaaaaagaagg 43443
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>emb|AL808032.1|CNS08CA7 BAC 30B15 of library A from Tetraodon nigroviridis
          Length = 109043

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 111   agaaaagaaaaacacagaatag 132
             ||||||||||||||||||||||
Sbjct: 49982 agaaaagaaaaacacagaatag 49961



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 111   agaaaagaaaaacacagaatag 132
             ||||||||||||||||||||||
Sbjct: 34978 agaaaagaaaaacacagaatag 34957
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>gb|AC168060.4| Mus musculus BAC clone RP23-305A9 from chromosome 8, complete sequence
          Length = 177422

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    tcaatcaagaaaagaaaaaca 124
              |||||||||||||||||||||
Sbjct: 139524 tcaatcaagaaaagaaaaaca 139544
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>gb|AC102050.13| Mus musculus chromosome 8, clone RP23-389O4, complete sequence
          Length = 203942

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    tcaatcaagaaaagaaaaaca 124
              |||||||||||||||||||||
Sbjct: 173239 tcaatcaagaaaagaaaaaca 173219
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>gb|AF030172.1| Arabidopsis thaliana defender against cell death 2 (DAD2) gene,
           complete cds
          Length = 1129

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 aagaaaagaaaaacacagaat 130
           |||||||||||||||||||||
Sbjct: 831 aagaaaagaaaaacacagaat 811
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>gb|AC125344.2| Mus musculus BAC clone RP24-332H21 from 12, complete sequence
          Length = 179908

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    aatcaagaaaagaaaaacaca 126
              |||||||||||||||||||||
Sbjct: 146337 aatcaagaaaagaaaaacaca 146357
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>gb|AC027510.7| Homo sapiens chromosome 18, clone RP11-118I2, complete sequence
          Length = 159205

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    aagaaaagaaaaacacagaat 130
              |||||||||||||||||||||
Sbjct: 125090 aagaaaagaaaaacacagaat 125110
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>emb|AL672234.27| Mouse DNA sequence from clone RP23-356I16 on chromosome 8, complete
              sequence
          Length = 221012

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    tcaatcaagaaaagaaaaaca 124
              |||||||||||||||||||||
Sbjct: 169542 tcaatcaagaaaagaaaaaca 169522
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>gb|AC005314.3| Arabidopsis thaliana chromosome 2 clone T32F12 map ve016, complete
             sequence
          Length = 79881

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   aagaaaagaaaaacacagaat 130
             |||||||||||||||||||||
Sbjct: 26454 aagaaaagaaaaacacagaat 26474
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>dbj|AK140475.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930007H20
           product:unclassifiable, full insert sequence
          Length = 3051

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 104 tcaatcaagaaaagaaaaaca 124
           |||||||||||||||||||||
Sbjct: 492 tcaatcaagaaaagaaaaaca 472
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>gb|AY049271.1| Arabidopsis thaliana At2g35520/T32F12.10 mRNA, complete cds
          Length = 909

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 aagaaaagaaaaacacagaat 130
           |||||||||||||||||||||
Sbjct: 475 aagaaaagaaaaacacagaat 455
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 98      atggtttcaatcaagaaaagaaaaa 122
               |||||||||||||||||| ||||||
Sbjct: 2483104 atggtttcaatcaagaaatgaaaaa 2483080
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>gb|AC013733.10| Homo sapiens BAC clone RP11-553I15 from 2, complete sequence
          Length = 152306

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    aagaaaagaaaaacacagaat 130
              |||||||||||||||||||||
Sbjct: 136032 aagaaaagaaaaacacagaat 136012
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>gb|AC073977.6| Homo sapiens BAC clone RP11-253H16 from 2, complete sequence
          Length = 165020

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   aagaaaagaaaaacacagaat 130
             |||||||||||||||||||||
Sbjct: 70971 aagaaaagaaaaacacagaat 70951
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>emb|Y17609.1|ATH17609 Arabidopsis thaliana dad1e gene, exons 1 to 5
          Length = 1767

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 110  aagaaaagaaaaacacagaat 130
            |||||||||||||||||||||
Sbjct: 1055 aagaaaagaaaaacacagaat 1035
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>emb|AL132639.4|CNS01DT4 Human chromosome 14 DNA sequence BAC R-407N17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196319

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 110   aagaaaagaaaaacacagaataggc 134
             ||||||||||||||||| |||||||
Sbjct: 33391 aagaaaagaaaaacacaaaataggc 33367
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>dbj|AK116327.1| Ciona intestinalis cDNA, clone:citb033g13, full insert sequence
          Length = 1625

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 79   aacctcgaaaaagagcagaat 99
            |||||||||||||||||||||
Sbjct: 1540 aacctcgaaaaagagcagaat 1520
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>gb|AC160992.2| Mus musculus BAC clone RP23-147I23 from chromosome 9, complete sequence
          Length = 215980

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    caatcaagaaaagaaaaaca 124
              ||||||||||||||||||||
Sbjct: 196372 caatcaagaaaagaaaaaca 196353
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>gb|BT018652.1| Zea mays clone EL01N0506A07.d mRNA sequence
          Length = 1619

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 ctcaggcctcaactcagcag 229
           ||||||||||||||||||||
Sbjct: 940 ctcaggcctcaactcagcag 959
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>gb|AC183762.2| Pan troglodytes BAC clone CH251-684C16 from chromosome 2, complete
             sequence
          Length = 139973

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 67180 taaaacagacatccattgaaaaag 67203
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>gb|AC183595.3| Pan troglodytes BAC clone CH251-641G8 from chromosome 2, complete
             sequence
          Length = 211457

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 59224 taaaacagacatccattgaaaaag 59201
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>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   caatcaagaaaagaaaaaca 124
             ||||||||||||||||||||
Sbjct: 17325 caatcaagaaaagaaaaaca 17306
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>ref|NM_053530.2| Rattus norvegicus twist gene homolog 1 (Drosophila) (Twist1), mRNA
          Length = 1513

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 112  gaaaagaaaaacacagaata 131
            ||||||||||||||||||||
Sbjct: 1317 gaaaagaaaaacacagaata 1336
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>gb|AC182469.3| Pan troglodytes BAC clone CH251-496G17 from chromosome 4, complete
              sequence
          Length = 191618

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    taaaagagacatccattgaaaaag 403
              ||||| ||||||||||||||||||
Sbjct: 118875 taaaatagacatccattgaaaaag 118852
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>gb|AC183765.3| Pan troglodytes BAC clone CH251-521I2 from chromosome 2, complete
              sequence
          Length = 179528

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 380    taaaagagacatccattgaaaaag 403
              ||||| ||||||||||||||||||
Sbjct: 144765 taaaacagacatccattgaaaaag 144788
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>gb|AC183918.1| Homo sapiens BAC clone RP11-170N9 from chromosome unknown, complete
              sequence
          Length = 151064

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 380    taaaagagacatccattgaaaaag 403
              ||||| ||||||||||||||||||
Sbjct: 127283 taaaatagacatccattgaaaaag 127306
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 110      aagaaaagaaaaacacagaa 129
                ||||||||||||||||||||
Sbjct: 34954895 aagaaaagaaaaacacagaa 34954876
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>gb|AC183532.3| Pan troglodytes BAC clone CH251-569N9 from chromosome 2, complete
              sequence
          Length = 192494

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    taaaagagacatccattgaaaaag 403
              ||||| ||||||||||||||||||
Sbjct: 156790 taaaacagacatccattgaaaaag 156767
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>gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete sequence
          Length = 155655

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 55251 taaaatagacatccattgaaaaag 55274
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>gb|AC134878.3| Homo sapiens BAC clone RP11-131M6 from Y, complete sequence
          Length = 155813

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 380    taaaagagacatccattgaaaaag 403
              ||||| ||||||||||||||||||
Sbjct: 139980 taaaatagacatccattgaaaaag 140003
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>gb|AY505564.1| Homo sapiens catenin (cadherin-associated protein), delta 1 (CTNND1)
             gene, complete cds
          Length = 59753

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aagaaaagaaaaacacagaa 129
             ||||||||||||||||||||
Sbjct: 44923 aagaaaagaaaaacacagaa 44904
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>emb|BX649221.3| Chicken DNA sequence from clone WAG-43K7, complete sequence
          Length = 101661

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aagaaaagaaaaacacagaa 129
             ||||||||||||||||||||
Sbjct: 24467 aagaaaagaaaaacacagaa 24486
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>emb|AL138710.16| Human DNA sequence from clone RP11-469A21 on chromosome 13, complete
            sequence
          Length = 66281

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  aagaaaagaaaaacacagaa 129
            ||||||||||||||||||||
Sbjct: 3612 aagaaaagaaaaacacagaa 3593
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>gb|AC138772.4| Homo sapiens BAC clone RP11-1345A16 from UL, complete sequence
          Length = 213227

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 380    taaaagagacatccattgaaaaag 403
              ||||| ||||||||||||||||||
Sbjct: 178298 taaaatagacatccattgaaaaag 178321
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>gb|AC145212.1| Homo sapiens BAC clone RP11-1368F8 from UL, complete sequence
          Length = 191469

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 36003 taaaatagacatccattgaaaaag 35980
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>emb|AL049709.18|HSDJ18C9 Human DNA sequence from clone RP1-18C9 on chromosome 20 Contains the 5'
             end of the ACAS2 gene for acetyl-Coenzyme A synthetase 2
             (ADP forming), the GGTL3 gene for gamma-
             glutamyltranspeptidase-like 3 protein, the HMG4L
             pseudogene similar to high mobility group proteins, the 5'
             end of the AIB3 gene for thyroid hormone receptor binding
             protein (KIAA0181) and four CpG Islands, complete sequence
          Length = 126755

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   agaaaaacacagaataggctgggc 139
             |||||||| |||||||||||||||
Sbjct: 29323 agaaaaacccagaataggctgggc 29346
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>emb|AL009028.1|HS164L12 Human DNA sequence from clone RP1-164L12 on chromosome Xq13.1-21.2
              Contains the 5' end of the ITM2A gene for integral membrane
              protein 2A, complete sequence
          Length = 135090

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    gatcaatgtaacagaaaatt 347
              ||||||||||||||||||||
Sbjct: 118612 gatcaatgtaacagaaaatt 118631
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>emb|AL645476.26| Mouse DNA sequence from clone RP23-70L6 on chromosome 11 Contains a CpG
              island, complete sequence
          Length = 143728

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    aagaaaagaaaaacacagaa 129
              ||||||||||||||||||||
Sbjct: 108229 aagaaaagaaaaacacagaa 108210
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>gb|AC117395.5| Homo sapiens 3 BAC RP11-651P23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172715

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 118   aaaaacacagaataggctgggcat 141
             |||||||||||| |||||||||||
Sbjct: 63162 aaaaacacagaagaggctgggcat 63139
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>emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chromosome 21, complete
             sequence
          Length = 158069

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 93893 taaaatagacatccattgaaaaag 93916
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>emb|CR589946.2| Human DNA sequence from clone WI2-679O21 on chromosome 1, complete
             sequence
          Length = 16121

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 13986 taaaatagacatccattgaaaaag 14009
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>emb|CR381535.11| Human DNA sequence from clone bP-2154M18 on chromosome 21, complete
            sequence
          Length = 152296

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  taaaagagacatccattgaaaaag 403
            ||||| ||||||||||||||||||
Sbjct: 6991 taaaatagacatccattgaaaaag 6968
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>gb|AC022069.6| Homo sapiens, clone RP11-107K17, complete sequence
          Length = 169240

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aagaaaagaaaaacacagaa 129
             ||||||||||||||||||||
Sbjct: 51660 aagaaaagaaaaacacagaa 51679
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>gb|AC114977.2| Homo sapiens chromosome 5 clone RP11-49C20, complete sequence
          Length = 180697

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   caagaaaagaaaaacacaga 128
             ||||||||||||||||||||
Sbjct: 33752 caagaaaagaaaaacacaga 33771
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>gb|AC007996.11| Homo sapiens chromosome 18, clone RP11-9E17, complete sequence
          Length = 182884

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  aagaaaagaaaaacacagaa 129
            ||||||||||||||||||||
Sbjct: 5863 aagaaaagaaaaacacagaa 5844
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>gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, complete sequence
          Length = 174399

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 92124 taaaatagacatccattgaaaaag 92147
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>emb|CR381670.5| Human DNA sequence from clone bP-2189O9 on chromosome 21, complete
             sequence
          Length = 129889

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 94274 taaaatagacatccattgaaaaag 94251
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 110      aagaaaagaaaaacacagaa 129
                ||||||||||||||||||||
Sbjct: 35044967 aagaaaagaaaaacacagaa 35044948
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>gb|AC138776.2| Homo sapiens BAC clone RP11-1277N13 from UL, complete sequence
          Length = 202926

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 86165 taaaatagacatccattgaaaaag 86142
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>gb|AC138777.3| Homo sapiens BAC clone RP11-1220P14 from 2, complete sequence
          Length = 220281

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  taaaagagacatccattgaaaaag 403
            ||||| ||||||||||||||||||
Sbjct: 6321 taaaatagacatccattgaaaaag 6298
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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
             sequence
          Length = 171376

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aagaaaagaaaaacacagaa 129
             ||||||||||||||||||||
Sbjct: 60585 aagaaaagaaaaacacagaa 60604
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>gb|AC097374.3| Homo sapiens BAC clone RP11-71B7 from 2, complete sequence
          Length = 127075

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 68287 taaaacagacatccattgaaaaag 68310
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 36      taatcttttttcctttaaca 55
               ||||||||||||||||||||
Sbjct: 2718386 taatcttttttcctttaaca 2718367
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>gb|AC148028.2| Homo sapiens chromosome UNKNOWN clone RP11-238G20, complete sequence
          Length = 172857

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 30080 taaaatagacatccattgaaaaag 30057
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>gb|AY221626.1| Clostridium perfringens putative azoreductase gene, complete cds
          Length = 570

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  taatcttttttcctttaaca 55
           ||||||||||||||||||||
Sbjct: 133 taatcttttttcctttaaca 114
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>emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on chromosome 22, complete
             sequence
          Length = 166566

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 83684 taaaatagacatccattgaaaaag 83661
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>emb|AL354822.8| Human DNA sequence from clone RP11-474C22 on chromosome 22, complete
             sequence
          Length = 161147

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 21236 taaaatagacatccattgaaaaag 21213
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>emb|BX572084.5| Human DNA sequence from clone RP11-423O2 on chromosome 1, complete
             sequence
          Length = 186739

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   taaaagagacatccattgaaaaag 403
             ||||| ||||||||||||||||||
Sbjct: 16203 taaaatagacatccattgaaaaag 16180
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>gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete sequence
          Length = 182571

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   aaaattgctagaattctcca 361
             ||||||||||||||||||||
Sbjct: 53336 aaaattgctagaattctcca 53355
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>gb|AC026762.17| Homo sapiens 3 BAC RP11-373C21 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 54780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 95   agaatggtttcaatcaagaaaaga 118
            |||||||||| |||||||||||||
Sbjct: 4140 agaatggttttaatcaagaaaaga 4117
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>gb|AC154868.3| Monodelphis domestica, clone XX-211C4, complete sequence
          Length = 129158

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   aaatcatcagggaaaattgc 313
             ||||||||||||||||||||
Sbjct: 99151 aaatcatcagggaaaattgc 99170
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>gb|AC006948.4|AC006948 Homo sapiens chromosome 17, clone hRPK.334_M_10, complete sequence
          Length = 168558

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    caagaaaagaaaaacacaga 128
              ||||||||||||||||||||
Sbjct: 158701 caagaaaagaaaaacacaga 158720
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>dbj|AP001153.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-886D15, complete
              sequence
          Length = 172487

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aagaaaagaaaaacacagaa 129
              ||||||||||||||||||||
Sbjct: 162386 aagaaaagaaaaacacagaa 162405
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>dbj|AP001528.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736K20, complete
             sequence
          Length = 155523

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    gaaaaagagcagaatggttt 104
             ||||||||||||||||||||
Sbjct: 16319 gaaaaagagcagaatggttt 16338
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>emb|AL355793.6| Human DNA sequence from clone RP4-694M10 on chromosome 1, complete
            sequence
          Length = 101333

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  taaaagagacatccattgaaaaag 403
            ||||| ||||||||||||||||||
Sbjct: 4785 taaaatagacatccattgaaaaag 4762
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>emb|BX004987.9| Human DNA sequence from clone RP11-435B5 on chromosome 1, complete
            sequence
          Length = 201709

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  taaaagagacatccattgaaaaag 403
            ||||| ||||||||||||||||||
Sbjct: 6150 taaaatagacatccattgaaaaag 6127
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>gb|AC140349.4| Mus musculus BAC clone RP24-250I16 from 12, complete sequence
          Length = 177344

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aagaaaagaaaaacacagaa 129
             ||||||||||||||||||||
Sbjct: 58818 aagaaaagaaaaacacagaa 58837
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>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome
          Length = 452528

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     gaatggtttcaatcaagaaaagaa 119
              ||||| ||||||||||||||||||
Sbjct: 229512 gaatgatttcaatcaagaaaagaa 229535
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    aaaattgctagaattctcca 361
              ||||||||||||||||||||
Sbjct: 896422 aaaattgctagaattctcca 896441
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>gb|AC080037.11| Homo sapiens chromosome 17, clone CTD-3010D24, complete sequence
          Length = 248996

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   caagaaaagaaaaacacaga 128
             ||||||||||||||||||||
Sbjct: 23456 caagaaaagaaaaacacaga 23475
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>dbj|AP001931.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691N7, complete
             sequences
          Length = 110116

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aagaaaagaaaaacacagaa 129
             ||||||||||||||||||||
Sbjct: 86408 aagaaaagaaaaacacagaa 86389


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,374,587
Number of Sequences: 3902068
Number of extensions: 5374587
Number of successful extensions: 165884
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165561
Number of HSP's gapped (non-prelim): 323
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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