ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 42 1.2
2gb|AC125142.4| Mus musculus BAC clone RP24-342G10 from chromosom... 42 1.2
3gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.6
4ref|XM_368262.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 4.6
5emb|AL954202.1| Pan troglodytes chromosome 22 clone PTB-083P20 m... 40 4.6
6gb|AC073927.9| Homo sapiens BAC clone RP11-604B16 from 7, comple... 40 4.6
7emb|AL355334.26| Human DNA sequence from clone RP11-399L7 on chr... 40 4.6
8emb|AL954203.1| Pan troglodytes chromosome 22 clone RP43-019O24 ... 40 4.6
9gb|AC161107.24| Medicago truncatula clone mth2-192o12, complete ... 40 4.6
10gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete se... 40 4.6
11gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, com... 40 4.6
12gb|AY818051.1| Haemophilus parasuis strain 174 ExbB (exbB) gene,... 40 4.6
13gb|AY101605.1| Actinobacillus suis strain C84 TonB (tonB), ExbB ... 40 4.6
14gb|AY101604.1| Actinobacillus suis strain SO4 TonB (tonB), ExbB ... 40 4.6
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
16gb|AC013717.8| Homo sapiens BAC clone RP11-24I5 from 2, complete... 40 4.6
17gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 40 4.6
18dbj|AB089839.1| Actinobacillus suis exbB, exbD, tbpB, tbpA genes... 40 4.6
19emb|BX322567.4| Zebrafish DNA sequence from clone CH211-240G9 in... 40 4.6
20dbj|AB018121.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 4.6
21emb|Y17916.1|APL17916 Actinobacillus pleuropneumoniae tolQ gene 40 4.6
22gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6

>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 73      aaattatgaaattggaaggac 93
               |||||||||||||||||||||
Sbjct: 2830647 aaattatgaaattggaaggac 2830627



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>gb|AC125142.4| Mus musculus BAC clone RP24-342G10 from chromosome 12, complete
             sequence
          Length = 174908

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    acaaaaagcaatggaggaaaa 52
             |||||||||||||||||||||
Sbjct: 93088 acaaaaagcaatggaggaaaa 93108



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>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete
              sequence
          Length = 762694

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    atgtctggtcattcatgtga 144
              ||||||||||||||||||||
Sbjct: 632966 atgtctggtcattcatgtga 632985



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>ref|XM_368262.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00982.4) partial mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ggagcaaaagcgagatgacc 298
           ||||||||||||||||||||
Sbjct: 656 ggagcaaaagcgagatgacc 637



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>emb|AL954202.1| Pan troglodytes chromosome 22 clone PTB-083P20 map q21.1, complete
              sequence
          Length = 197872

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    tgtacaccaaaatattccct 190
              ||||||||||||||||||||
Sbjct: 115392 tgtacaccaaaatattccct 115411



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>gb|AC073927.9| Homo sapiens BAC clone RP11-604B16 from 7, complete sequence
          Length = 185676

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    acaaatgcaatctccgagtt 116
             ||||||||||||||||||||
Sbjct: 56184 acaaatgcaatctccgagtt 56165



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>emb|AL355334.26| Human DNA sequence from clone RP11-399L7 on chromosome 10 Contains the
              cathepsin L-like 1 (CTSLL1) pseudogene, a novel gene, a
              pseudogene similar to part of ring finger protein 3 (RNF3),
              the 5' end of the MINPP1 gene for multiple inositol
              polyphosphate histidine phosphatase 1 and a CpG island,
              complete sequence
          Length = 173390

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 15     aaattcccaaagctagcacaaaaa 38
              ||||||||||||||| ||||||||
Sbjct: 161160 aaattcccaaagctaacacaaaaa 161137



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>emb|AL954203.1| Pan troglodytes chromosome 22 clone RP43-019O24 map q21.1, complete
             sequence
          Length = 206110

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   tgtacaccaaaatattccct 190
             ||||||||||||||||||||
Sbjct: 42465 tgtacaccaaaatattccct 42484



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>gb|AC161107.24| Medicago truncatula clone mth2-192o12, complete sequence
          Length = 106909

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tttttgtacaccaaaatatt 186
             ||||||||||||||||||||
Sbjct: 13357 tttttgtacaccaaaatatt 13338



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>gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete sequence
          Length = 127653

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tttttgtacaccaaaatatt 186
              ||||||||||||||||||||
Sbjct: 106860 tttttgtacaccaaaatatt 106841



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>gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, complete sequence
          Length = 219013

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    ctagcacaaaaagcaatggaggaa 50
             ||||||||||| ||||||||||||
Sbjct: 71576 ctagcacaaaaggcaatggaggaa 71553



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>gb|AY818051.1| Haemophilus parasuis strain 174 ExbB (exbB) gene, complete cds
          Length = 669

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gagaagcattagttgcaaca 241
           ||||||||||||||||||||
Sbjct: 506 gagaagcattagttgcaaca 525



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>gb|AY101605.1| Actinobacillus suis strain C84 TonB (tonB), ExbB (exbB), ExbD (exbD),
            transferrin-binding protein B precursor (tbpB), and
            transferrin-binding protein A precursor (tbpA) genes,
            complete cds
          Length = 6938

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  gagaagcattagttgcaaca 241
            ||||||||||||||||||||
Sbjct: 1606 gagaagcattagttgcaaca 1625



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>gb|AY101604.1| Actinobacillus suis strain SO4 TonB (tonB), ExbB (exbB), ExbD (exbD),
            transferrin-binding protein B precursor (tbpB), and
            transferrin-binding protein A precursor (tbpA) genes,
            complete cds
          Length = 6938

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  gagaagcattagttgcaaca 241
            ||||||||||||||||||||
Sbjct: 1606 gagaagcattagttgcaaca 1625



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 195      agtcaagattaatgaaacca 214
                ||||||||||||||||||||
Sbjct: 14204303 agtcaagattaatgaaacca 14204284



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>gb|AC013717.8| Homo sapiens BAC clone RP11-24I5 from 2, complete sequence
          Length = 168813

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   tgaaggttgatgaaactgtt 334
             ||||||||||||||||||||
Sbjct: 50380 tgaaggttgatgaaactgtt 50361



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>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10,
             complete sequence
          Length = 142737

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   agtcaagattaatgaaacca 214
             ||||||||||||||||||||
Sbjct: 76376 agtcaagattaatgaaacca 76357



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>dbj|AB089839.1| Actinobacillus suis exbB, exbD, tbpB, tbpA genes for cytoplasmic
           membrane protein, cytoplasmic membrane protein,
           transferrin binding protein B, transferrin binding
           protein A, comeplete cds
          Length = 5920

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gagaagcattagttgcaaca 241
           ||||||||||||||||||||
Sbjct: 704 gagaagcattagttgcaaca 723



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>emb|BX322567.4| Zebrafish DNA sequence from clone CH211-240G9 in linkage group 18,
             complete sequence
          Length = 169628

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaaagcaatggaggaaaag 53
             ||||||||||||||||||||
Sbjct: 42352 aaaaagcaatggaggaaaag 42371



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>dbj|AB018121.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXE2
          Length = 86854

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    tctactacaaattatgaaat 84
             ||||||||||||||||||||
Sbjct: 11576 tctactacaaattatgaaat 11557



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>emb|Y17916.1|APL17916 Actinobacillus pleuropneumoniae tolQ gene
          Length = 1477

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gagaagcattagttgcaaca 241
           ||||||||||||||||||||
Sbjct: 877 gagaagcattagttgcaaca 896



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 195      agtcaagattaatgaaacca 214
                ||||||||||||||||||||
Sbjct: 14212545 agtcaagattaatgaaacca 14212526


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,362,025
Number of Sequences: 3902068
Number of extensions: 3362025
Number of successful extensions: 66235
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66141
Number of HSP's gapped (non-prelim): 94
length of query: 346
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 324
effective length of database: 17,147,199,772
effective search space: 5555692726128
effective search space used: 5555692726128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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