ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016893.1| Zea mays clone Contig726 mRNA sequence 56 1e-04
2gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence 48 0.024
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
4dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
5gb|AY103745.1| Zea mays PCO097601 mRNA sequence 48 0.024
6dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
7emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chr... 44 0.38
8gb|AC111083.13| Mus musculus chromosome 3, clone RP23-142D9, com... 42 1.5
9gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete ... 42 1.5
10gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence 42 1.5
11gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 42 1.5
12emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein 42 1.5
13gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORD... 42 1.5
14gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordei... 42 1.5
15gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR 42 1.5
16gb|AC102273.9| Mus musculus chromosome 3, clone RP24-285I22, com... 40 5.9
17ref|NM_187920.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
18gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.9
19gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1... 40 5.9
20gb|AE006829.1| Sulfolobus solfataricus P2 section 188 of 272 of ... 40 5.9
21ref|XM_716488.1| Candida albicans SC5314 putative nuclear conden... 40 5.9
22gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, comp... 40 5.9
23gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome... 40 5.9
24gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRN... 40 5.9
25gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) su... 40 5.9
26emb|Z85986.1|HS108K11 Human DNA sequence from clone RP1-108K11 o... 40 5.9
27gb|DQ417605.1| Bombyx mori aspartic protease (CatD) gene, comple... 40 5.9
28emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on ch... 40 5.9
29emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chro... 40 5.9
30gb|AC158386.4| Mus musculus chromosome 3, clone RP24-281K23, com... 40 5.9
31emb|CR932397.9| Zebrafish DNA sequence from clone CH211-123E19 i... 40 5.9
32emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 i... 40 5.9
33emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, com... 40 5.9
34gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, com... 40 5.9
35dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region,... 40 5.9
36gb|AC084740.5| Homo sapiens BAC clone RP11-423E20 from 4, comple... 40 5.9
37dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, comple... 40 5.9
40gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, compl... 40 5.9
41gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Canc... 40 5.9
42gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, comp... 40 5.9
43dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
44gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA 40 5.9
45dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
46dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
47dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
48emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chr... 40 5.9
49dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.9 
>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 365 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 424
           ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| ||||| |
Sbjct: 190 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggtttggtg 249

                       
Query: 425 tgcgtcggctgc 436
           |||| |||||||
Sbjct: 250 tgcgccggctgc 261
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>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 365  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 424
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1101 tcatgaataccaatcagcacgattagtattttggcggggctggtggcaaccggttcggtg 1042

                        
Query: 425  tgcgtcggctgc 436
            |||| |||||||
Sbjct: 1041 tgcgccggctgc 1030
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                           
Query: 371     atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 430
               ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 7680469 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 7680410

                           
Query: 431     ggctgctggagt 442
               |||||| |||||
Sbjct: 7680409 ggctgccggagt 7680398



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                                 
Query: 323     cagaaacagagcgtg-tgcctagcaagaatacat 355
               ||||||||| ||||| ||||||||||||||||||
Sbjct: 7680525 cagaaacagggcgtggtgcctagcaagaatacat 7680492



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     tatatttctataaacaactc 215
               ||||||||||||||||||||
Sbjct: 7680653 tatatttctataaacaactc 7680634
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                          
Query: 371    atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 430
              ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 103724 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 103665

                          
Query: 431    ggctgctggagt 442
              |||||| |||||
Sbjct: 103664 ggctgccggagt 103653



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                                
Query: 323    cagaaacagagcgtg-tgcctagcaagaatacat 355
              ||||||||| ||||| ||||||||||||||||||
Sbjct: 103780 cagaaacagggcgtggtgcctagcaagaatacat 103747



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    tatatttctataaacaactc 215
              ||||||||||||||||||||
Sbjct: 103908 tatatttctataaacaactc 103889
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>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 365  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 424
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1338 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggttcggtg 1279

                        
Query: 425  tgcgtcggctgc 436
            |||| |||||||
Sbjct: 1278 tgcgccggctgc 1267



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 193  ctatatatttctataaacaactc 215
            |||||||||||||||||||||||
Sbjct: 1507 ctatatatttctataaacaactc 1485
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>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                              
Query: 323  cagaaacagagcgtg-tgcctagcaagaatacat 355
            ||||||||| ||||| ||||||||||||||||||
Sbjct: 3021 cagaaacagggcgtggtgcctagcaagaatacat 2988



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  tatatttctataaacaactc 215
            ||||||||||||||||||||
Sbjct: 3149 tatatttctataaacaactc 3130



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                        
Query: 371  atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 430
            ||||||||||||  || |||||| | || || ||||| || ||||| ||||| || ||||
Sbjct: 2965 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtacgtc 2906

                        
Query: 431  ggctgctggagt 442
            |||||| |||||
Sbjct: 2905 ggctgccggagt 2894
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>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
              sequence
          Length = 217775

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 51     aaaattggtacaaattttatgtcaat 76
              |||||| |||||||||||||||||||
Sbjct: 204055 aaaatttgtacaaattttatgtcaat 204080
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>gb|AC111083.13| Mus musculus chromosome 3, clone RP23-142D9, complete sequence
          Length = 206194

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     aaattttatgtcaatttgtaagaag 86
              |||||||||||||| ||||||||||
Sbjct: 111546 aaattttatgtcaaattgtaagaag 111570
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>gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete sequence
          Length = 176296

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 49    ttaaaattggtacaaattttatgtcaatt 77
             |||||||||||||||  ||||||||||||
Sbjct: 62102 ttaaaattggtacaagatttatgtcaatt 62130
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>gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence
          Length = 169553

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    tacaaattttatgtcaatttg 79
             |||||||||||||||||||||
Sbjct: 31376 tacaaattttatgtcaatttg 31356
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 49      ttaaaattggtacaaattttatgtcaatt 77
               |||||||||||||||  ||||||||||||
Sbjct: 1491548 ttaaaattggtacaagatttatgtcaatt 1491576
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>emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein
          Length = 954

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 185 tgattcaactatatatttcta 205
           |||||||||||||||||||||
Sbjct: 833 tgattcaactatatatttcta 813
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>gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORDB3a) mRNA 3' end
           sequence, partial cds
          Length = 231

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 185 tgattcaactatatatttcta 205
           |||||||||||||||||||||
Sbjct: 134 tgattcaactatatatttcta 114
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>gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordein gene, complete cds
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 185  tgattcaactatatatttcta 205
            |||||||||||||||||||||
Sbjct: 1102 tgattcaactatatatttcta 1082
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>gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR
          Length = 165

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 185 tgattcaactatatatttcta 205
           |||||||||||||||||||||
Sbjct: 41  tgattcaactatatatttcta 21
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>gb|AC102273.9| Mus musculus chromosome 3, clone RP24-285I22, complete sequence
          Length = 162779

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     agtagagtcatctatattta 25
             ||||||||||||||||||||
Sbjct: 23668 agtagagtcatctatattta 23649
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>ref|NM_187920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ctccaccaatctcaccaccc 316
           ||||||||||||||||||||
Sbjct: 48  ctccaccaatctcaccaccc 29
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 397     ggtggcgctggcggcaaccg 416
               ||||||||||||||||||||
Sbjct: 2802126 ggtggcgctggcggcaaccg 2802145
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>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete
           cds
          Length = 729

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ctccaccaatctcaccaccc 316
           ||||||||||||||||||||
Sbjct: 100 ctccaccaatctcaccaccc 81
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>gb|AE006829.1| Sulfolobus solfataricus P2 section 188 of 272 of the complete genome
          Length = 10809

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 46   tgattaaaattggtacaaatttta 69
            ||||||||| ||||||||||||||
Sbjct: 9237 tgattaaaaatggtacaaatttta 9214
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>ref|XM_716488.1| Candida albicans SC5314 putative nuclear condensin complex subunit G
            (CaO19_9190), mRNA
          Length = 3780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   agctgattaaaattggtacaaatt 66
            |||||||||||| |||||||||||
Sbjct: 3338 agctgattaaaagtggtacaaatt 3361
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>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   agaattgattcaactatatatttc 203
             |||||||||||||||| |||||||
Sbjct: 41316 agaattgattcaactaaatatttc 41339
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>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence
          Length = 163773

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 180    agaattgattcaactatatatttc 203
              |||||||||||||||| |||||||
Sbjct: 151929 agaattgattcaactaaatatttc 151952
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>gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRNA (cDNA clone
           MGC:68557 IMAGE:4031378), complete cds
          Length = 971

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 tgcgcatgcatacacactgt 243
           ||||||||||||||||||||
Sbjct: 422 tgcgcatgcatacacactgt 441
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>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type,
           3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete
           cds
          Length = 974

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 tgcgcatgcatacacactgt 243
           ||||||||||||||||||||
Sbjct: 421 tgcgcatgcatacacactgt 440
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>emb|Z85986.1|HS108K11 Human DNA sequence from clone RP1-108K11 on chromosome 6p21 Contains the
              SFRS3 for splicing factor arginine/serine-rich (SRP20), the
              STK38 gene for serine/threonine protein kinase (NDR), the
              3' end of a gene for a novel protein (2410004NRIK) and a
              CpG island, complete sequence
          Length = 145616

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     aaattggtacaaattttatg 71
              ||||||||||||||||||||
Sbjct: 140140 aaattggtacaaattttatg 140159
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>gb|DQ417605.1| Bombyx mori aspartic protease (CatD) gene, complete cds
          Length = 6201

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  aaaacacttatacaacatca 142
            ||||||||||||||||||||
Sbjct: 1305 aaaacacttatacaacatca 1286
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>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4
             Contains the 5' end of a novel gene, complete sequence
          Length = 27299

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gaatacataataataaatca 367
             ||||||||||||||||||||
Sbjct: 26365 gaatacataataataaatca 26384
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>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the
             5' end of a novel gene, the gene for a novel protein
             similar to opioid growth factor receptor and a CpG island,
             complete sequence
          Length = 108253

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   atatatttctataaacaactctgg 218
             |||||||||||||||| |||||||
Sbjct: 20311 atatatttctataaactactctgg 20334
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>gb|AC158386.4| Mus musculus chromosome 3, clone RP24-281K23, complete sequence
          Length = 177594

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     agtagagtcatctatattta 25
             ||||||||||||||||||||
Sbjct: 33538 agtagagtcatctatattta 33557
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>emb|CR932397.9| Zebrafish DNA sequence from clone CH211-123E19 in linkage group 13,
             complete sequence
          Length = 173825

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    tattaaagctgattaaaatt 56
             ||||||||||||||||||||
Sbjct: 92592 tattaaagctgattaaaatt 92573
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>emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 in linkage group 16,
             complete sequence
          Length = 59017

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   ttcaactatatatttctata 207
             ||||||||||||||||||||
Sbjct: 40475 ttcaactatatatttctata 40456
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>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence
          Length = 184178

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    ttcaactatatatttctata 207
              ||||||||||||||||||||
Sbjct: 181477 ttcaactatatatttctata 181496
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>gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, complete sequence
          Length = 188326

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tacaaattttatgtcaattt 78
              ||||||||||||||||||||
Sbjct: 115415 tacaaattttatgtcaattt 115434
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>dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region, clone:Cjg0193F
          Length = 309

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 169 aaccaatagagagaattgat 188
           ||||||||||||||||||||
Sbjct: 139 aaccaatagagagaattgat 120
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>gb|AC084740.5| Homo sapiens BAC clone RP11-423E20 from 4, complete sequence
          Length = 131395

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    aaaattggtacaaattttat 70
             ||||||||||||||||||||
Sbjct: 79690 aaaattggtacaaattttat 79671
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 150     aaataaaagatggatcatgaaccaatag 177
               |||||||||||||| || ||||||||||
Sbjct: 3398188 aaataaaagatggaacaggaaccaatag 3398161
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     ctccaccaatctcaccaccc 316
               ||||||||||||||||||||
Sbjct: 8585799 ctccaccaatctcaccaccc 8585818
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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   aatacataataataaatcat 368
             ||||||||||||||||||||
Sbjct: 52428 aatacataataataaatcat 52447
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>gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, complete sequence
          Length = 162554

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    ctgattaaaattggtacaaatttt 68
             |||||| |||||||||||||||||
Sbjct: 78485 ctgattcaaattggtacaaatttt 78508
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>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94635

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   aatacataataataaatcat 368
             ||||||||||||||||||||
Sbjct: 56035 aatacataataataaatcat 56054
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>gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, complete sequence
          Length = 115682

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   atggatcatgaaccaataga 178
             ||||||||||||||||||||
Sbjct: 62993 atggatcatgaaccaataga 62974
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>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0462H08
          Length = 139152

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   ctccaccaatctcaccaccc 316
             ||||||||||||||||||||
Sbjct: 17994 ctccaccaatctcaccaccc 18013
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>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA
          Length = 2228

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  gaatacataataataaatca 367
            ||||||||||||||||||||
Sbjct: 2170 gaatacataataataaatca 2189
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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 150   aaataaaagatggatcatgaaccaatag 177
             |||||||||||||| || ||||||||||
Sbjct: 38008 aaataaaagatggaacaggaaccaatag 37981
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>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full
           insert sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ctccaccaatctcaccaccc 316
           ||||||||||||||||||||
Sbjct: 144 ctccaccaatctcaccaccc 125
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>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02, full
           insert sequence
          Length = 239

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 196 tatatttctataaacaactc 215
           ||||||||||||||||||||
Sbjct: 78  tatatttctataaacaactc 59
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>emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chromosome X, complete
              sequence
          Length = 132296

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     attaaagctgattaaaattg 57
              ||||||||||||||||||||
Sbjct: 116433 attaaagctgattaaaattg 116452
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>dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1201B11
          Length = 156200

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    tacaaattttatgtcaattt 78
             ||||||||||||||||||||
Sbjct: 70126 tacaaattttatgtcaattt 70107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,558,513
Number of Sequences: 3902068
Number of extensions: 4558513
Number of successful extensions: 93286
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93074
Number of HSP's gapped (non-prelim): 212
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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