ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27d09 |
|---|---|
| Clone Library Name | barley_pub |
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNH 113 T T PI+SS + S ++TSS PTQP H Sbjct: 466 TTTRPISSSSSSSSGIVTSSQRPTQPTH 493
>MASY_RICCO (P17815) Malate synthase, glyoxysomal (EC 2.3.3.9)| Length = 567 Score = 31.2 bits (69), Expect = 0.69 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = -1 Query: 213 WLAWTGSKQAANF-----DAQYGRIEQFNWLRWSVVHDGDWVGL 97 WL TGS N A+ R++ + WL++ V DGD +G+ Sbjct: 453 WLTGTGSVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGV 496
>MASY_CUCMA (P24571) Malate synthase, glyoxysomal (EC 2.3.3.9)| Length = 566 Score = 31.2 bits (69), Expect = 0.69 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = -1 Query: 213 WLAWTGSKQAANF-----DAQYGRIEQFNWLRWSVVHDGDWVGL 97 WL TGS N A+ R++ + WL++ V DGD +G+ Sbjct: 452 WLTGTGSVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGV 495
>YD5A_METJA (P58018) Hypothetical protein MJ1351.1| Length = 364 Score = 31.2 bits (69), Expect = 0.69 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 213 WLAWTGSKQAANFDAQYGRIEQFNWLRWSVVHDGDWVGLG 94 WLA ++ N A +G FN L WSVVH+G+ G Sbjct: 170 WLAH--ARYPTNTRAWWGGAHPFNLLNWSVVHNGEITSYG 207
>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1A) Length = 1707 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +1 Query: 73 RLSRPPPTQPNPITIVDHRPAEPIKLLDPP 162 R PP P P D RP+ PI LL PP Sbjct: 1132 RPPEPPAGPPAPAPRPDERPSSPIPLLPPP 1161
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = +3 Query: 24 PLTETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSS 161 P T T+P TS+ S T ST PT + P TS T+ +S Sbjct: 225 PTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTS 270 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSS 161 T T+P TS+ T T+ST PT P TS + T +S Sbjct: 185 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTS 228 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSS 161 T T+P TS+ T T+ST PT P TS + T +S Sbjct: 176 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTS 219 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSS 161 T T+P TS+ T T+ST PT P TS + T +S Sbjct: 167 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTS 210 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSS 161 T T+P TS+ T T+ST PT P TS + T +S Sbjct: 158 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTS 201 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSS 161 T T+P TS+ T T+ST PT P TS + T +S Sbjct: 149 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTS 192 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSS 161 T T+P TS+ T T+ST PT P TS T+ +S Sbjct: 194 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTS 237
>MASY_BRANA (P13244) Malate synthase, glyoxysomal (EC 2.3.3.9)| Length = 561 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = -1 Query: 213 WLAWTGSKQAANF-----DAQYGRIEQFNWLRWSVVHDGDWVGL 97 WL +GS N A+ R++ + W+R+ V DGD +G+ Sbjct: 447 WLTGSGSVPLYNLMEDAATAEISRVQNWQWIRYGVELDGDGLGV 490
>MASY_CUCSA (P08216) Malate synthase, glyoxysomal (EC 2.3.3.9)| Length = 568 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Frame = -1 Query: 213 WLAWTGSKQAANF-----DAQYGRIEQFNWLRWSVVHDGDWVGL 97 WL GS N A+ R++ + WL++ V DGD +G+ Sbjct: 454 WLTGAGSVPLYNLAEDAATAEISRVQNWQWLKYGVELDGDGLGV 497
>EXTN1_ARATH (Q38913) Extensin-1 precursor (AtExt1) (AtExt4)| Length = 373 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 79 SRPPPTQPNPITIVDHRPAEPIKLLDPPVL 168 S PPP +P +V H P P+ PPV+ Sbjct: 289 SPPPPVHYSPPPVVYHSPPPPVHYSPPPVV 318 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 79 SRPPPTQPNPITIVDHRPAEPIKLLDPPVL 168 S PPP +P +V H P P+ PPV+ Sbjct: 273 SPPPPVHYSPPPVVYHSPPPPVHYSPPPVV 302 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 79 SRPPPTQPNPITIVDHRPAEPIKLLDPPVL 168 S PPP +P +V H P P+ PPV+ Sbjct: 257 SPPPPVHYSPPPVVYHSPPPPVHYSPPPVV 286 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 79 SRPPPTQPNPITIVDHRPAEPIKLLDPPVL 168 S PPP +P +V H P P+ PPV+ Sbjct: 241 SPPPPVHYSPPPVVYHSPPPPVHYSPPPVV 270
>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)| (Manganese(II) purple acid phosphatase) Length = 464 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/42 (26%), Positives = 24/42 (57%) Frame = +2 Query: 35 DIPNHIEYKKWEHAYHVLHQPNPTQSPSWTTDQRSQLNCSIL 160 +I + +K + H YHV ++ + + SP W + +R+ + +L Sbjct: 236 EIGETVPFKPYTHRYHVPYKASQSTSPFWYSIKRASAHIIVL 277
>DAMX_ECO57 (Q8X826) Protein damX| Length = 428 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 315 SPCPSQAALAGPSSTIPPASRTAGLAAGGR 226 +P P + A P T PA TA AAGG+ Sbjct: 303 TPAPKETATTAPVQTASPAQTTATPAAGGK 332
>CAF1B_MOUSE (Q9D0N7) Chromatin assembly factor 1 subunit B (CAF-1 subunit B)| (Chromatin assembly factor I p60 subunit) (CAF-I 60 kDa subunit) (CAF-Ip60) Length = 572 Score = 29.3 bits (64), Expect = 2.6 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = +3 Query: 18 PNPLTETSPITSSIKNGSTLITSSTNP-TQPNHHRGPQTSGAN*TARSSRIVHQNLLLAC 194 P+P T+ SP S+IK+ + I + +P QP+ + Q +G N A R V N L Sbjct: 441 PSPTTQ-SPAPSAIKDSPSAIPAGKSPLPQPSEEKTLQPAGQNMKAPQPRRVTLNTLQTW 499 Query: 195 SLSMP 209 + P Sbjct: 500 GKTAP 504
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 36 TSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN 143 TSP S T +T S +PT PN+ PQ S A+ Sbjct: 1709 TSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPAS 1744
>FLIF_CAUCR (Q04954) Flagellar M-ring protein| Length = 536 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = -1 Query: 315 SPCPSQAALAGPSSTIPPASRTAGLAAG 232 +P P Q ALAGPS PP +R LA G Sbjct: 442 APAPGQIALAGPSGG-PPVTRLVTLADG 468
>DOCK6_HUMAN (Q96HP0) Dedicator of cytokinesis protein 6| Length = 2047 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 76 LSRPPPTQPNPITIVDHRPAEPIKLLDPPVLC 171 LSRPP +P P+ + PA+ ++LL P C Sbjct: 61 LSRPPDAEPGPLRDLVEFPADDLELLLQPREC 92
>NFIA_CHICK (P17923) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 522 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +3 Query: 15 IPNPLTETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN 143 +P P+ +T P T+S + G+T TS T T P TS AN Sbjct: 462 VPLPVPDTKPPTTSTEGGATSPTSPTYST-------PSTSPAN 497
>YCF2_EPIVI (P30072) Protein ycf2| Length = 2216 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Frame = +2 Query: 14 NPKSIDRDIPNHIEY-----KKWEHAYHVLHQPNPTQSPSWTTDQRSQ 142 +P+ I+ D+ NHI + + W ++ + +PN P W+ R + Sbjct: 1997 DPQQIEEDLFNHIVWAPRIWRPWGFIFYCIERPNELGFPYWSRSFRGK 2044
>MASY_GOSHI (P17432) Malate synthase, glyoxysomal (EC 2.3.3.9)| Length = 567 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = -1 Query: 213 WLAWTGSKQAANF-----DAQYGRIEQFNWLRWSVVHDGDWVGL 97 WL +GS N A+ R++ + WL++ V DGD +G+ Sbjct: 453 WLTGSGSVPLYNLMEDAATAEISRVQIWQWLKYGVELDGDGLGV 496
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 28.5 bits (62), Expect = 4.5 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +1 Query: 31 QRHPQSHRV*KMGAR-LSRPPPTQPNPITIVDHRPAEPIKLLDPP 162 QRH HR R L+ PPPT +P +++ +RP P + DPP Sbjct: 278 QRHNSLHRKTPGPVRGLAPPPPTSASP-SLLSNRPPPPAR--DPP 319
>DPOLM_MOUSE (Q9JIW4) DNA polymerase mu (EC 2.7.7.7) (Pol Mu)| Length = 496 Score = 28.5 bits (62), Expect = 4.5 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Frame = -1 Query: 312 PCPSQAALAG---PSSTIPPASRTAGLAAGGRAPWPWLAWTGSKQAANFDAQYGRIEQFN 142 P P QAALAG P T + + P+ L WTGS+ ++ R E+ Sbjct: 397 PQPQQAALAGALPPCPTWKAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGL 456 Query: 141 WL 136 WL Sbjct: 457 WL 458
>ENV_MLVFP (P26803) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 676 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 3 LGAQIPNPLTETSPITSSIKNGSTLITSSTNPTQP 107 L +PNPL + + S+ + TLI+ S PTQP Sbjct: 281 LSFPLPNPLPKPAKSPSASNSTPTLISPSPAPTQP 315
>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and| dental anomalies protein) Length = 1630 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 39 SPITSSIKNGSTLITSSTNPTQPNHHRGP 125 +P++SS + S++ + S+N T PN R P Sbjct: 1451 APLSSSSSSASSITSPSSNVTTPNSQRSP 1479
>PKSL1_ASPPA (Q12053) Aflatoxin biosynthesis polyketide synthase (PKS)| Length = 2109 Score = 28.1 bits (61), Expect = 5.8 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%) Frame = +3 Query: 18 PNPLTETSPITSSIKNGSTLITS---------STNPTQPNHHRGPQTSGAN*TARSSRIV 170 P P T T PI S K +T ++S S P QP H P+T+G+ A+ + Sbjct: 1653 PPPPTTTMPI-SPYKPANTQVSSQAIPAEATHSHTPPQPKHSPVPETAGSAPAAKGVGVS 1711 Query: 171 HQNL 182 ++ L Sbjct: 1712 NEKL 1715
>RDRP_P1AMV (Q07518) RNA replication protein (156 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1385 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = -1 Query: 312 PCPSQAALAGPSSTIPPASRTAGLAAGGRAPWPWLAWTGSKQAANFDA 169 PCP+++ + SS P+ A A PW+AW A F+A Sbjct: 515 PCPTKSQASPASSN--PSGPDAQPTAQNPETLPWVAWLPKLNALGFEA 560
>ARHGB_RAT (Q9ES67) Rho guanine nucleotide exchange factor 11 (RhoGEF| glutamate transport modulator GTRAP48) Length = 1527 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 36 TSPITSSIKNGSTLITSSTNPTQPNHHRGP 125 +SPI S + + S+L S+ T P+HHR P Sbjct: 21 SSPIASWLSSLSSLGDSTPERTSPSHHRQP 50
>TONB_XANCP (O34261) Protein tonB| Length = 223 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 85 PPPTQPNPITIVDHRPAEPIKLLDPP 162 PPP P P + +P P+K L PP Sbjct: 67 PPPPPPPPPPPPEDKPPPPVKNLSPP 92
>SAN1_YEAST (P22470) Protein SAN1| Length = 610 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 18 PNPLTETSPITSSIKNGSTLITSSTNPTQPNHHR 119 PNP S + S NG +S++ T P+H+R Sbjct: 423 PNPSASDSSASPSAANGPNSNNTSSDATDPHHNR 456
>MASY_SOYBN (P45458) Malate synthase, glyoxysomal (EC 2.3.3.9) (MS) (Fragment)| Length = 564 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = -1 Query: 213 WLAWTGSKQAANF-----DAQYGRIEQFNWLRWSVVHDGDWVGL 97 WL +GS N A+ R++ + WL++ V +GD +G+ Sbjct: 450 WLTGSGSVPLYNLMEDAATAEISRVQNWQWLKYGVELNGDGLGV 493
>POLS_RUBV (P08564) Structural polyprotein [Contains: Spike glycoprotein E1;| Spike glycoprotein E2] (Fragment) Length = 522 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 315 SPCPSQAALAGPSSTIPPASRTAGLAAGGR 226 SPC +A+ G S +PPA +TAGLA R Sbjct: 27 SPC-GRASPPGNWSFLPPAPKTAGLAVRAR 55
>ADA2_HUMAN (O75478) Transcriptional adapter 2-like (ADA2-like protein)| Length = 443 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Frame = +2 Query: 53 EYKKWE--HAYHVLHQPNPTQSPSWTTDQRSQL 145 EYKK + H Y ++ P PSWT + L Sbjct: 51 EYKKHQSDHTYEIMTSDFPVLDPSWTAQEEMAL 83
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 27.3 bits (59), Expect = 9.9 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSSRIVHQNLLLACSLSMP 209 + TS S +G+T +SS + P P TS + ++ SS + A S S P Sbjct: 33 SSTSGSGQSTSSGTTNSSSSPTTSPPTTSSSPPTS-THTSSPSSTSTQSSSTAATSSSAP 91 Query: 210 ATAMELSRLP 239 +TA + +P Sbjct: 92 STASSTTSIP 101
>O56A3_HUMAN (Q8NH54) Olfactory receptor 56A3| Length = 315 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +3 Query: 177 NLLLACSLSMPATAMELSRLPLVLLFCLLAGSSTTAL 287 + LL C + P+ LS LPL LLF L G++TT L Sbjct: 15 DFLLNCFVRSPSWQHWLS-LPLSLLFLLAVGANTTLL 50
>CDC24_YEAST (P11433) Cell division control protein 24 (Calcium regulatory| protein) Length = 854 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 48 TSSIKNGSTLITSSTNPTQPNHHRGPQT 131 TSS S++++ +T PNHH QT Sbjct: 686 TSSTAKSSSMMSPTTTMNTPNHHNSRQT 713
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 27.3 bits (59), Expect = 9.9 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +3 Query: 30 TETSPITSSIKNGSTLITSSTNPTQPNHHRGPQTSGAN*TARSSRIVHQNLLLACSLSMP 209 + TS S +G+T +SS + P P TS + ++ SS + A S S P Sbjct: 33 SSTSGSGQSTSSGTTNSSSSPTTSPPTTSSSPPTS-THTSSPSSTSTQSSSTAATSSSAP 91 Query: 210 ATAMELSRLP 239 +TA + +P Sbjct: 92 STASSTTSIP 101
>ENV_MLVFF (P26804) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 676 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 3 LGAQIPNPLTETSPITSSIKNGSTLITSSTNPTQP 107 L +PNPL + + + + TLI+ S PTQP Sbjct: 281 LSFPLPNPLPKPAKSPPASSSTPTLISPSPTPTQP 315
>OXAA2_LACPL (Q88WR8) Membrane protein oxaA 2 precursor| Length = 307 Score = 27.3 bits (59), Expect = 9.9 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 76 LSRPPPTQPNPITIVDHRPAEP 141 + P PTQP PI + +P+ P Sbjct: 266 IKTPTPTQPKPINATESKPSHP 287
>MREC_ECOLI (P16926) Rod shape-determining protein mreC| Length = 367 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = +3 Query: 3 LGAQIPNPLTETSPITSSIKNGSTLITSSTNPTQPNHHRGPQ-----TSGAN*TARS 158 +G ++P P T + T T+ PTQP +R PQ SGA AR+ Sbjct: 307 MGPKLPEPATGIAQPTPQQPATGNAATAPAAPTQPAANRSPQRATPPQSGAQPPARA 363 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,478,639 Number of Sequences: 219361 Number of extensions: 1114293 Number of successful extensions: 5080 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 4723 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5070 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
