ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl27d08 |
|---|---|
| Clone Library Name | barley_pub |
>NRDD_HAEIN (P43752) Anaerobic ribonucleoside-triphosphate reductase (EC| 1.17.4.2) Length = 707 Score = 30.4 bits (67), Expect = 1.1 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +3 Query: 42 YNHFPNIYQNMNAIKDLWEQQY 107 Y +PNI N+ A++D+W+ Y Sbjct: 609 YGEYPNIQHNLKALEDVWDYSY 630
>NRDD_SALTY (Q9L646) Anaerobic ribonucleoside-triphosphate reductase (EC| 1.17.4.2) Length = 712 Score = 30.4 bits (67), Expect = 1.1 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +3 Query: 42 YNHFPNIYQNMNAIKDLWEQQY 107 Y +PNI N+ A++D+W+ Y Sbjct: 608 YGEYPNIQHNLKALEDVWDYSY 629
>NRDD_ECOLI (P28903) Anaerobic ribonucleoside-triphosphate reductase (EC| 1.17.4.2) Length = 712 Score = 30.4 bits (67), Expect = 1.1 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +3 Query: 42 YNHFPNIYQNMNAIKDLWEQQY 107 Y +PNI N+ A++D+W+ Y Sbjct: 608 YGEYPNIQHNLKALEDVWDYSY 629
>YM86_YEAST (Q04814) Hypothetical 15.6 kDa protein in HOR7-COX7 intergenic| region Length = 134 Score = 30.0 bits (66), Expect = 1.5 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = +1 Query: 49 IFQTYIRT*MQLRTCGNNNTWYR*STDISFSRSTCFYQLPW*HRNNSVQFTSLQCSSAAR 228 +F +YIRT + + T S+ +SF + CF W N S + +Q Sbjct: 5 VFVSYIRTRIGFKPLSTIYTPVS-SSSLSFDKEACFPFKKWHELNMSQKQEFIQRFVKNY 63 Query: 229 RHRWSTSESNPCLWGFRLRC-QSPESPS 309 RH++ +S++N L G + + +SPS Sbjct: 64 RHQYPSSKTNVSLKGLSIGMDEHNDSPS 91
>MATK_TRIHY (Q8MCN0) Maturase K (Intron maturase)| Length = 506 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -2 Query: 190 QNCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 +NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 187 RNCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIWO (Q8MCL7) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIWI (Q8MCL8) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIRS (Q8MCN8) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFTPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIMI (Q8MCM7) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIGC (Q8MCN2) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIFR (Q8MCN3) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFTSTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIBE (Q5YJV6) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRIAO (Q8MCN9) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226
>MATK_TRISM (Q8MCM3) Maturase K (Intron maturase)| Length = 509 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF TK+ R L +Y Y C ++S+ F+ Sbjct: 187 NCFIPTKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 225
>AX2_BETVU (P82010) Antifungal protein AX2| Length = 46 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +1 Query: 196 FTSLQCSSAARRHRWSTSESNPCLWGFRLRCQSP 297 F+ C A R W + CL GF+ CQ P Sbjct: 15 FSDTNCQKACNREDWPNGK---CLVGFKCECQRP 45
>WNTG_DROME (P09615) Protein wingless precursor (Protein Wnt-1) (dWnt-1)| (Protein int-1) (dInt-1) Length = 468 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = +2 Query: 188 LSSSPPFSVHQLREGIVGRHLRV-------IHVCGAFVCGANLQR 301 L SP F LR+GI+G H R + CG CG +R Sbjct: 390 LEPSPSFCEKNLRQGILGTHGRQCNETSLGVDGCGLMCCGRGYRR 434
>YNC3_CAEEL (P34536) Putative zinc finger protein R05D3.3| Length = 421 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +2 Query: 191 SSSPPFSVHQLREGIVGRHLRVIHV-CGAFVCGAN 292 +S P + QLRE GR+ V+ V C ++C N Sbjct: 186 ASGPTSEIQQLREAAFGRYKNVLCVICNEWICSRN 220
>PSD_ZYMMO (Q9X5E3) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 246 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 206 FSVHQLREGIVGRHLRVIHVCGAFVCGANLQRAHPSGVRRKF 331 F VH R + GR R+ ++ GAFV A+L +A R+ F Sbjct: 118 FDVHINRAPVPGRIARIAYIPGAFV-NADLDKASEKNERQHF 158
>CERK1_HUMAN (Q8TCT0) Ceramide kinase (EC 2.7.1.138) (Acylsphingosine kinase)| (hCERK) (Lipid kinase 4) (LK4) Length = 537 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/42 (30%), Positives = 18/42 (42%) Frame = +1 Query: 202 SLQCSSAARRHRWSTSESNPCLWGFRLRCQSPESPSFWCPEE 327 ++ C ARRHRW ++ +FWCPEE Sbjct: 85 TVHCVKRARRHRWKWAQ-----------------VTFWCPEE 109
>PMA1_DUNAC (P54210) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 1103 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/72 (23%), Positives = 30/72 (41%) Frame = -2 Query: 319 DTRRMGSLEIGTADESPTNMDYSQMSTNDAFSQLMNTEGR*TGQNCFCVTKEVGKNMLT* 140 DT+ D+ +D++++ DAF L +E +G K+ G N L Sbjct: 16 DTKEQVKKSADNGDKGVDEVDFAKIGLEDAFKYLNCSEHGLSGAEAEARLKQHGPNKLPD 75 Query: 139 RKRCLLIIYTMY 104 R +++Y Y Sbjct: 76 NSRNPVLVYFGY 87
>MIK1_SCHPO (P30290) Mitosis inhibitor protein kinase mik1 (EC 2.7.11.1)| Length = 581 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 11/47 (23%) Frame = +1 Query: 199 TSLQCSSAARRHRWSTSESN-----------PCLWGFRLRCQSPESP 306 TSL ++R +WS E N PC G +++ + P+SP Sbjct: 129 TSLSTGLLSKREKWSLWEGNLTNPRSEQPHTPCKKGTKIKLKPPQSP 175
>MATK_TRISO (Q8MCM2) Maturase K (Intron maturase)| Length = 506 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/39 (28%), Positives = 18/39 (46%) Frame = -2 Query: 187 NCFCVTKEVGKNMLT*RKRCLLIIYTMYCCSHKSLIAFM 71 NCF +K+ R L +Y Y C ++S+ F+ Sbjct: 188 NCFIPSKKSISTFSKSNPRLFLFLYNFYVCEYESIFLFL 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,727,100 Number of Sequences: 219361 Number of extensions: 1103136 Number of successful extensions: 2677 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2628 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2674 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
