ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEM1A_DROME (Q24322) Semaphorin-1A precursor (Semaphorin-I) (Sem... 30 4.0
2CYB_MARPO (P26852) Cytochrome b 28 8.9

>SEM1A_DROME (Q24322) Semaphorin-1A precursor (Semaphorin-I) (Sema I)|
          Length = 850

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = -2

Query: 397 GSRDEDLSIKTSSGFGSNLLCWRGPKQSI*QKWMIKQDEPQSHKFCKFKILPQAGELTPF 218
           G+R+   ++          L W  P+       +  +DE     + +  ++P  G L   
Sbjct: 61  GARNTVFNLSIHDLVEQQRLVWTSPEDDTKMCLVKGKDEEACQNYIRIMVVPSPGRLFVC 120

Query: 217 GSNFFREVC 191
           G+N FR +C
Sbjct: 121 GTNSFRPMC 129



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>CYB_MARPO (P26852) Cytochrome b|
          Length = 404

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 467 IRYIFLHIWAL*AVSKIKFTSYLRFKR*RLVHQDFFWVWFEPTLLEG 327
           I  +F+ + AL  ++    TSY+R    R +HQ FFW+     LL G
Sbjct: 298 IGLVFVSLLALPFIN----TSYVRSSSFRPIHQKFFWLLVADCLLLG 340


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,562,519
Number of Sequences: 219361
Number of extensions: 1230201
Number of successful extensions: 2170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2170
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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