>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                            
Query: 384      tcatctcttgaaccgtaagtagctcgtgaatttgatcttggacactgctcatagggccca 443
                ||||||||||| | | |||||||  ||||||||||||||| |||||||||||| ||| ||
Sbjct: 11139240 tcatctcttgagctgcaagtagcgtgtgaatttgatcttgaacactgctcataaggctca 11139181

                                        
Query: 444      tatgtgcagaaatatgtatcgaat 467
                |||| |||||||||||| ||||||
Sbjct: 11139180 tatgcgcagaaatatgtgtcgaat 11139157



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 305      ctgttagatcgactgtttggggcccctccagcagag 340
                ||||||||| |  ||||| |||||||||||||||||
Sbjct: 11139476 ctgttagatggcttgtttagggcccctccagcagag 11139441

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                            
Query: 384      tcatctcttgaaccgtaagtagctcgtgaatttgatcttggacactgctcatagggccca 443
                ||||||||||| | | |||||||  ||||||||||||||| |||||||||||| ||| ||
Sbjct: 11138939 tcatctcttgagctgcaagtagcgtgtgaatttgatcttgaacactgctcataaggctca 11138880

                                        
Query: 444      tatgtgcagaaatatgtatcgaat 467
                |||| |||||||||||| ||||||
Sbjct: 11138879 tatgcgcagaaatatgtgtcgaat 11138856



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 305      ctgttagatcgactgtttggggcccctccagcagag 340
                ||||||||| |  ||||| |||||||||||||||||
Sbjct: 11139175 ctgttagatggcttgtttagggcccctccagcagag 11139140

>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157771

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                         
Query: 384   tcatctcttgaaccgtaagtagctcgtgaatttgatcttggacactgctcatagggccca 443
             ||||||||||| | | |||||||  ||||||||||||||| |||||||||||| ||| ||
Sbjct: 46935 tcatctcttgagctgcaagtagcgtgtgaatttgatcttgaacactgctcataaggctca 46994

                                     
Query: 444   tatgtgcagaaatatgtatcgaat 467
             |||| |||||||||||| ||||||
Sbjct: 46995 tatgcgcagaaatatgtgtcgaat 47018



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 305   ctgttagatcgactgtttggggcccctccagcagag 340
             ||||||||| |  ||||| |||||||||||||||||
Sbjct: 46699 ctgttagatggcttgtttagggcccctccagcagag 46734

>dbj|AK058669.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H01, full
           insert sequence
          Length = 1376

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                       
Query: 400 aagtagctcgtgaatttgatcttggacactgctcatagggcccatatgtgcagaaatatg 459
           |||||||  ||||||||||||||| |||||||||||| ||| |||||| |||||||||||
Sbjct: 883 aagtagcgtgtgaatttgatcttgaacactgctcataaggctcatatgcgcagaaatatg 824

                   
Query: 460 tatcgaat 467
           | ||||||
Sbjct: 823 tgtcgaat 816



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 305 ctgttagatcgactgtttggggcccctccagcagag 340
           ||||||||| |  ||||| |||||||||||||||||
Sbjct: 975 ctgttagatggcttgtttagggcccctccagcagag 940

>ref|NM_202323.1| Arabidopsis thaliana unknown protein AT1G59865 transcript variant
           AT1G59865.1 mRNA, complete cds
          Length = 528

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 274 attgtggttcatcttgtttgat 295
           ||||||||||||||||||||||
Sbjct: 475 attgtggttcatcttgtttgat 454

>ref|NM_202324.1| Arabidopsis thaliana unknown protein AT1G59865 transcript variant
           AT1G59865.2 mRNA, complete cds
          Length = 743

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 274 attgtggttcatcttgtttgat 295
           ||||||||||||||||||||||
Sbjct: 680 attgtggttcatcttgtttgat 659

>gb|AC007258.3| Arabidopsis thaliana chromosome I BAC F23H11 genomic sequence, complete
             sequence
          Length = 144422

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 274   attgtggttcatcttgtttgat 295
             ||||||||||||||||||||||
Sbjct: 98220 attgtggttcatcttgtttgat 98241

>gb|AY299289.1| Arabidopsis thaliana clone E3 mRNA sequence
          Length = 660

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 274 attgtggttcatcttgtttgat 295
           ||||||||||||||||||||||
Sbjct: 555 attgtggttcatcttgtttgat 534

>gb|AC131901.3| Homo sapiens chromosome 8, clone RP11-115H22, complete sequence
          Length = 33912

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 443   atatgtgcagaaatatgtatc 463
             |||||||||||||||||||||
Sbjct: 12588 atatgtgcagaaatatgtatc 12608

>gb|AC122809.4| Mus musculus BAC clone RP23-272E5 from chromosome 7, complete
           sequence
          Length = 205725

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 catcctttgttttacaaataa 146
           |||||||||||||||||||||
Sbjct: 869 catcctttgttttacaaataa 889

>gb|AC158339.1| Homo sapiens chromosome 8 clone WI2-3382N4, complete sequence
          Length = 42713

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 443   atatgtgcagaaatatgtatc 463
             |||||||||||||||||||||
Sbjct: 13911 atatgtgcagaaatatgtatc 13931

>emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, complete sequence
          Length = 322774

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 239    ttggggcaaaattttgaattt 259
              |||||||||||||||||||||
Sbjct: 121175 ttggggcaaaattttgaattt 121155

>gb|AC122222.6| Mus musculus BAC clone RP23-128D11 from 7, complete sequence
          Length = 212225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    catcctttgttttacaaataa 146
              |||||||||||||||||||||
Sbjct: 139757 catcctttgttttacaaataa 139777

>gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequence
          Length = 108932

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 443    atatgtgcagaaatatgtatc 463
              |||||||||||||||||||||
Sbjct: 101646 atatgtgcagaaatatgtatc 101666

>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence
          Length = 180436

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    aacaggtttcatcctttgttt 137
              |||||||||||||||||||||
Sbjct: 110485 aacaggtttcatcctttgttt 110465

>gb|AC110180.10| Mus musculus chromosome 19, clone RP24-358B11, complete sequence
          Length = 144511

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   tgaatttgatcttggacact 429
             ||||||||||||||||||||
Sbjct: 34698 tgaatttgatcttggacact 34679

>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence
          Length = 211178

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   agcttggggcaaaattttga 255
             ||||||||||||||||||||
Sbjct: 19156 agcttggggcaaaattttga 19175

>gb|AC113020.9| Mus musculus chromosome 16, clone RP23-186N8, complete sequence
          Length = 214853

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 435    tagggcccatatgtgcagaa 454
              ||||||||||||||||||||
Sbjct: 145995 tagggcccatatgtgcagaa 146014

>gb|AC145772.1| Pan troglodytes BAC clone RP43-14J20 from 7, complete sequence
          Length = 165087

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   atcctttgttttacaaataa 146
             ||||||||||||||||||||
Sbjct: 39221 atcctttgttttacaaataa 39202

>gb|AF533892.1| Mus musculus p63 (Trp63) gene, alternatively spliced, complete cds
          Length = 208158

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   tagggcccatatgtgcagaa 454
             ||||||||||||||||||||
Sbjct: 92738 tagggcccatatgtgcagaa 92757

>emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chromosome 9 Contains a
             pseudogene similar to part of a zinc finger protein, two
             novel pseudogenes, a novel gene similar to DKFZP434I1117,
             a novel pseudogene (FLJ23476), two novel gene, a novel
             gene similar to MGC12954 and four CpG islands, complete
             sequence
          Length = 186108

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   atcctttgttttacaaataa 146
             ||||||||||||||||||||
Sbjct: 62038 atcctttgttttacaaataa 62019

>gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, complete sequence
          Length = 164213

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   agcttggggcaaaattttga 255
             ||||||||||||||||||||
Sbjct: 19233 agcttggggcaaaattttga 19252

>gb|AC104110.2| Homo sapiens chromosome 5 clone RP11-160A17, complete sequence
          Length = 165636

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    atcctttgttttacaaataa 146
              ||||||||||||||||||||
Sbjct: 142633 atcctttgttttacaaataa 142652

>gb|AC087260.15| Homo sapiens 12p BAC RP11-437F6 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174804

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    gcattatttagttctttcat 36
             ||||||||||||||||||||
Sbjct: 26749 gcattatttagttctttcat 26730

>emb|AL929211.19| Mouse DNA sequence from clone RP23-323P11 on chromosome 2, complete
             sequence
          Length = 65494

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    ctaaatgcagcctacagaca 117
             ||||||||||||||||||||
Sbjct: 63430 ctaaatgcagcctacagaca 63411

>gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complete sequence
          Length = 166660

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tttcatacaagaagtagaaa 50
             ||||||||||||||||||||
Sbjct: 23700 tttcatacaagaagtagaaa 23719

>gb|AC073165.7|AC073165 Homo sapiens chromosome 5 clone RP11-54E9, complete sequence
          Length = 152869

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   atcctttgttttacaaataa 146
             ||||||||||||||||||||
Sbjct: 77805 atcctttgttttacaaataa 77824

>emb|BX001018.11| Zebrafish DNA sequence from clone DKEY-11D22, complete sequence
          Length = 206937

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    aaaatctgactaaatgcagc 108
             ||||||||||||||||||||
Sbjct: 42870 aaaatctgactaaatgcagc 42851

>gb|AC003960.1|AC003960 Human Cosmid g5129g129 from 7q31.3, complete sequence
          Length = 43593

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   atcctttgttttacaaataa 146
             ||||||||||||||||||||
Sbjct: 16391 atcctttgttttacaaataa 16372

>gb|DQ163893.1| Candidatus Hamiltonella defensa clone P210060 genomic sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 ttcatcttgtttgatcatcc 300
           ||||||||||||||||||||
Sbjct: 80  ttcatcttgtttgatcatcc 99


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,850,919
Number of Sequences: 3902068
Number of extensions: 4850919
Number of successful extensions: 93650
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93510
Number of HSP's gapped (non-prelim): 140
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)