>PSME2_MOUSE (P97372) Proteasome activator complex subunit 2 (Proteasome|
           activator 28-beta subunit) (PA28beta) (PA28b) (Activator
           of multicatalytic protease subunit 2) (11S regulator
           complex beta subunit) (REG-beta)
          Length = 238

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 19  TDIKQTTETSQAGYLTLHNKIFHQHA---SKTWQVMISCQHIISWIQHL 156
           TD ++  E  + GYL  + K+    A    + W +   C  +I+WIQHL
Sbjct: 79  TDKQEKKEVPKCGYLPGNEKLLALLALVKPEVWTLKEKCILVITWIQHL 127

>SNAA1_ARATH (Q9LXZ5) Alpha-soluble NSF attachment protein 1 (Alpha-SNAP1)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           alpha 1)
          Length = 381

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +3

Query: 21  RYKTDHRNQSSRIFNITQQDISSTCFQNLASHDKLSAHYFLDPASNTIDRLISPERRTVT 200
           RY+T   + SSR FN++QQ  S  CF+    H+   AH       + I  L   ++RT+T
Sbjct: 22  RYQTTRVSNSSRDFNLSQQHCS--CFRPKRRHE---AHL------SFIGTLQYSKQRTIT 70

Query: 201 NNNTASYSDRHGVIL 245
              +A+ + R  ++L
Sbjct: 71  RAASATIARRQLLLL 85

>PSME2_HUMAN (Q9UL46) Proteasome activator complex subunit 2 (Proteasome|
           activator 28-beta subunit) (PA28beta) (PA28b) (Activator
           of multicatalytic protease subunit 2) (11S regulator
           complex beta subunit) (REG-beta)
          Length = 238

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 19  TDIKQTTETSQAGYLTLHNKIFHQHA---SKTWQVMISCQHIISWIQHL 156
           TD ++  E  + G+L  + K+    A    + W +   C  +I+WIQHL
Sbjct: 79  TDKQEKKEVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHL 127

>PSME2_BOVIN (Q5E9G3) Proteasome activator complex subunit 2 (Proteasome|
           activator 28-beta subunit) (PA28beta) (PA28b)
          Length = 238

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 19  TDIKQTTETSQAGYLTLHNKIFHQHA---SKTWQVMISCQHIISWIQHL 156
           TD ++  E  + G+L  + K+    A    + W +   C  +I+WIQHL
Sbjct: 79  TDKQEKKEVPKCGFLPGNEKVLALLALVKPEVWTLKEKCILVITWIQHL 127

>YGB5_YEAST (P33199) Hypothetical 15.0 kDa protein in PDR6-PDR1 intergenic|
           region
          Length = 130

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 78  DISSTCFQNLASHDKLSAHYFLDPASNTI 164
           D+ S CF N    D LS + FL P S+ +
Sbjct: 72  DVDSLCFSNCFQPDALSGNVFLPPRSSNM 100

>K6PF2_SYNY3 (Q55988) 6-phosphofructokinase 2 (EC 2.7.1.11) (Phosphofructokinase|
           2) (Phosphohexokinase 2)
          Length = 384

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -3

Query: 325 LLQAFASEDGQYAVKMLLSGGL-IVVIPRITPCLSL*L---AVLLFVTVRRSGLMSLSIV 158
           ++Q    + G   +   ++GG  I++IP ITPCL+  +        + +R+SG     IV
Sbjct: 184 IVQVMGRDAGHLTLHAGIAGGADIILIPEITPCLTSEIIRNCCYQLMNLRKSGRHFALIV 243

Query: 157 LDAG 146
           +  G
Sbjct: 244 ISEG 247

>PSME2_PIG (Q863Z0) Proteasome activator complex subunit 2 (Proteasome|
           activator 28-beta subunit) (PA28beta) (PA28b)
          Length = 238

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 19  TDIKQTTETSQAGYLTLHNKIFHQHA---SKTWQVMISCQHIISWIQHL 156
           TD ++  E  + G+L  + KI         + W +   C  +I+WIQHL
Sbjct: 79  TDKQEKKEVPKCGFLPGNEKILALLGLVKPEVWTLKEKCILVITWIQHL 127

>ZNF73_HUMAN (O43830) Zinc finger protein 73 (Zinc finger protein 186) (hZNF2)|
          Length = 326

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 46  SQAGYLTLHNKIFHQHASKTWQVMISCQHIISWIQHLTR*T 168
           SQ  YLT+H      H + TWQ   +C H      H ++ T
Sbjct: 183 SQKSYLTIH------HRTHTWQKPYACDHCEKAFSHKSKLT 217

>Y1067_METMP (Q6LYC4) Putative iron-sulfur protein MMP1067|
          Length = 494

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 349 QVAFNAGKLLQAFASEDGQYAVKMLLSGGLIVVIPRITPC 230
           +VAF  G L+     E G+ A+++L + G+ V+IP+   C
Sbjct: 264 RVAFFTGCLVDFRLQEIGKSAIRVLNAHGVSVIIPKNQVC 303

>PARC_HUMAN (Q8IWT3) p53-associated parkin-like cytoplasmic protein|
           (UbcH7-associated protein 1)
          Length = 2517

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 391 IRRVLCHEAPKVQAQVAFNAGKLLQAFASEDGQYAVKMLLS 269
           +  +LC+  P+++     +AGK+LQA A+ D      +LLS
Sbjct: 171 LMHMLCNPEPQIRR----SAGKMLQALAAHDAGSRAHVLLS 207

>Y109_MYCPN (P75453) Protein MPN109 (C09_orf165)|
          Length = 165

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +3

Query: 66  ITQQDISSTCFQNLASHDKLSAHYFLDPASNTIDRLISPERRTVTNNNTASYSDRHGVIL 245
           I Q+D    C+Q+L  H + S  Y LD  +NT   L       +         + HGV +
Sbjct: 11  INQKD----CWQSLIDHKERS--YSLDFVNNTEKEL------PLIYGYEVKDFENHGVKI 58

Query: 246 GITTIRPPD 272
           G TT +P D
Sbjct: 59  GYTTCKPSD 67

>Y092_METJA (Q57557) Putative iron-sulfur protein MJ0092|
          Length = 489

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 373 HEAPKVQAQVAFNAGKLLQAFASEDGQYAVKMLLSGGLIVVIPRITPC 230
           + A   + +VAF  G L+       G+ A+K+L + G+ VVIP+   C
Sbjct: 253 YPAESEKLRVAFFTGCLVDFRLQNVGKDAIKVLNAHGVSVVIPKNQVC 300

>RDRP_ACLSA (P54891) RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase)|
            (216.5 kDa protein) (ORF1)
          Length = 1885

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 69   TQQDISSTCFQNLASHDKLSAHYFLDPASNTIDRLISP---ERRTVTN-NNTASYSDRHG 236
            T  D      QNL   D  SAH+F++   N I+ ++ P   E+   +N  N  ++ +  G
Sbjct: 1210 TMNDFIGIDEQNLIYKDMPSAHHFMENKGNHIEVILVPSMIEKELYSNYGNVMTFGESQG 1269

Query: 237  V 239
            +
Sbjct: 1270 L 1270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,330,983
Number of Sequences: 219361
Number of extensions: 1140468
Number of successful extensions: 2950
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2950
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)