ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107337.1| Zea mays PCO064147 mRNA sequence 127 3e-26
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
3dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
4emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 101 2e-18
5emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 101 2e-18
6ref|XM_474407.1| Oryza sativa (japonica cultivar-group), predic... 96 1e-16
7dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
8gb|AY111562.1| Zea mays CL51463_1 mRNA sequence 54 4e-04
9gb|AY104073.1| Zea mays PCO099302 mRNA sequence 54 4e-04
10gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2,... 42 1.4
11ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 ... 40 5.4
12gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 40 5.4
13gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, comp... 40 5.4
14gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, c... 40 5.4
15gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRN... 40 5.4
16gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome... 40 5.4
17emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01 40 5.4
18gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, com... 40 5.4
19emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase... 40 5.4
20emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, B... 40 5.4
21emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in l... 40 5.4
22gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, com... 40 5.4
23ref|NM_207096.1| Danio rerio wingless-type MMTV integration site... 40 5.4
24gb|AC034215.4|AC034215 Homo sapiens chromosome 5 clone CTD-2001K... 40 5.4
25emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Co... 40 5.4
26gb|BC066432.1| Danio rerio wingless-type MMTV integration site f... 40 5.4
27gb|AC115020.11| Mus musculus chromosome 1, clone RP24-231D14, co... 40 5.4
28emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chro... 40 5.4
29gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome... 40 5.4 
>gb|AY107337.1| Zea mays PCO064147 mRNA sequence
          Length = 1264

 Score =  127 bits (64), Expect = 3e-26
 Identities = 130/152 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  tctagggattacaacgataaggccaccagatagtagcatcttcacagcatactgtccgtc 301
            ||||||||||||||||||||| ||||||| |||| || | || | ||||||  ||| |||
Sbjct: 1078 tctagggattacaacgataagaccaccaggtagtggcttatttatagcatagagtcagtc 1019

                                                                        
Query: 302  ctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaacctt 361
            || |||||||| || |||||||||||||| ||   ||| |||||||| || |||||||||
Sbjct: 1018 cttgctggcaaccgtctgaagaagtttactggtactgagggcaacctatgtctgaacctt 959

                                            
Query: 362  gggtgcctcatggcatagaaccctcctaatgc 393
            |||||||||||  |||||||||||||||||||
Sbjct: 958  gggtgcctcatcacatagaaccctcctaatgc 927
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 2e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                            
Query: 252      acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 311
                |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 34954907 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 34954848

                                                                            
Query: 312      aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 371
                  || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 34954847 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 34954788

                                               
Query: 372      tggcatagaaccctcctaatgctgcgagaac 402
                || ||||||||||| | |||||||| |||||
Sbjct: 34954787 tgacatagaaccctgccaatgctgcaagaac 34954757
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>dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J04, full
            insert sequence
          Length = 3717

 Score =  101 bits (51), Expect = 2e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                        
Query: 252  acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 311
            |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 3497 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 3438

                                                                        
Query: 312  aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 371
              || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 3437 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3378

                                           
Query: 372  tggcatagaaccctcctaatgctgcgagaac 402
            || ||||||||||| | |||||||| |||||
Sbjct: 3377 tgacatagaaccctgccaatgctgcaagaac 3347
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>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
             sequence
          Length = 84361

 Score =  101 bits (51), Expect = 2e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                         
Query: 252   acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 311
             |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 60289 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 60230

                                                                         
Query: 312   aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 371
               || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 60229 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 60170

                                            
Query: 372   tggcatagaaccctcctaatgctgcgagaac 402
             || ||||||||||| | |||||||| |||||
Sbjct: 60169 tgacatagaaccctgccaatgctgcaagaac 60139
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score =  101 bits (51), Expect = 2e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                         
Query: 252   acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 311
             |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 13959 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 13900

                                                                         
Query: 312   aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 371
               || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 13899 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 13840

                                            
Query: 372   tggcatagaaccctcctaatgctgcgagaac 402
             || ||||||||||| | |||||||| |||||
Sbjct: 13839 tgacatagaaccctgccaatgctgcaagaac 13809
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>ref|XM_474407.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3036

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                        
Query: 287  agcatactgtccgtcctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaac 346
            ||||| ||||| ||||| |||||||  || |||||||| || || |||||||||||||||
Sbjct: 3032 agcatgctgtcggtccttgctggcagtcgtctgaagaaattcactggcgttgaaggcaac 2973

                                                                    
Query: 347  ctgtgcctgaaccttgggtgcctcatggcatagaaccctcctaatgctgcgagaac 402
            || |  |||||||| |||||||||||| ||||||||||| | |||||||| |||||
Sbjct: 2972 ctatatctgaacctcgggtgcctcatgacatagaaccctgccaatgctgcaagaac 2917
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>dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A06, full
            insert sequence
          Length = 3730

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 125/151 (82%)
 Strand = Plus / Minus

                                                                        
Query: 252  acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 311
            |||| |||||||||||||||| | |||   || | ||||| ||||| | ||| |||||||
Sbjct: 3519 acaatgataaggccaccagatggcagctattttatagcatgctgtcggcccttgctggca 3460

                                                                        
Query: 312  aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 371
              || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 3459 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3400

                                           
Query: 372  tggcatagaaccctcctaatgctgcgagaac 402
            || ||||||||||| | |||||||| |||||
Sbjct: 3399 tgacatagaaccctgccaatgctgcaagaac 3369
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>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence
          Length = 612

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 285 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 327
           ||||||| ||||| |||||||| |||| |||||||||||||||
Sbjct: 353 acagcatgctgtcagtcctcgccggcagacgcctgaagaagtt 395
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>gb|AY104073.1| Zea mays PCO099302 mRNA sequence
          Length = 1254

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 285 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 327
           ||||||| ||||| |||||||| |||| |||||||||||||||
Sbjct: 989 acagcatgctgtcggtcctcgccggcagacgcctgaagaagtt 947
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>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence
          Length = 180221

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 371   atggcatagaaccctcctaat 391
             |||||||||||||||||||||
Sbjct: 15003 atggcatagaaccctcctaat 14983
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>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds
          Length = 2557

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 348  tgtgcctgaaccttgggtgcctca 371
            |||||||||||||||| |||||||
Sbjct: 2466 tgtgcctgaaccttggatgcctca 2443
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>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    acagacatggagtaattcta 245
              ||||||||||||||||||||
Sbjct: 133750 acagacatggagtaattcta 133769
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>gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, complete sequence
          Length = 157264

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 191    aacagtcacaaataataacacagc 214
              |||||||||||||||||| |||||
Sbjct: 129658 aacagtcacaaataataaaacagc 129635
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>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence
          Length = 189666

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    acagacatggagtaattcta 245
              ||||||||||||||||||||
Sbjct: 164883 acagacatggagtaattcta 164864
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>gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRNA (cDNA clone
           MGC:83751 IMAGE:6640465), complete cds
          Length = 2200

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 gacagacatggagtaattct 244
           ||||||||||||||||||||
Sbjct: 923 gacagacatggagtaattct 904
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>gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome 13, complete sequence
          Length = 200156

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 34     accacagaaaccagtcaagcagga 57
              ||||||||||||||| ||||||||
Sbjct: 141971 accacagaaaccagtgaagcagga 141948
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>emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01
          Length = 2184

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 gacagacatggagtaattct 244
           ||||||||||||||||||||
Sbjct: 896 gacagacatggagtaattct 877
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>gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, complete sequence
          Length = 196300

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    cagaccacagaaaccagtca 50
             ||||||||||||||||||||
Sbjct: 26063 cagaccacagaaaccagtca 26044
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>emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase A2 antiplatelet protein
           mRNA
          Length = 445

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ggcgttgaaggcaacctgtg 351
           ||||||||||||||||||||
Sbjct: 53  ggcgttgaaggcaacctgtg 72
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>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
          Length = 90020

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 348   tgtgcctgaaccttgggtgcctca 371
             |||||||||||||||| |||||||
Sbjct: 57053 tgtgcctgaaccttggatgcctca 57030
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>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4, complete
              sequence
          Length = 150030

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     gatatttcatcaacatgctt 97
              ||||||||||||||||||||
Sbjct: 139743 gatatttcatcaacatgctt 139762
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>gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, complete sequence
          Length = 163320

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ttccaaaacctggcaagtca 115
             ||||||||||||||||||||
Sbjct: 22717 ttccaaaacctggcaagtca 22698
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>ref|NM_207096.1| Danio rerio wingless-type MMTV integration site family, member 16
            (wnt16), mRNA
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   gatatttcatcaacatgctt 97
            ||||||||||||||||||||
Sbjct: 1314 gatatttcatcaacatgctt 1295
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>gb|AC034215.4|AC034215 Homo sapiens chromosome 5 clone CTD-2001K4, complete sequence
          Length = 142116

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      aaaagtggttagaagcacag 22
              ||||||||||||||||||||
Sbjct: 102893 aaaagtggttagaagcacag 102874
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>emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB90ZB04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2560

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 348  tgtgcctgaaccttgggtgcctca 371
            |||||||||||||||| |||||||
Sbjct: 2470 tgtgcctgaaccttggatgcctca 2447
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>gb|BC066432.1| Danio rerio wingless-type MMTV integration site family, member 16,
            mRNA (cDNA clone MGC:77293 IMAGE:6965366), complete cds
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   gatatttcatcaacatgctt 97
            ||||||||||||||||||||
Sbjct: 1314 gatatttcatcaacatgctt 1295
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>gb|AC115020.11| Mus musculus chromosome 1, clone RP24-231D14, complete sequence
          Length = 188569

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    cagaccacagaaaccagtca 50
             ||||||||||||||||||||
Sbjct: 41164 cagaccacagaaaccagtca 41183
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>emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chromosome 13, complete
              sequence
          Length = 255133

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 34     accacagaaaccagtcaagcagga 57
              ||||||||||||||| ||||||||
Sbjct: 224816 accacagaaaccagtgaagcagga 224793
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>gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome 16, complete sequence
          Length = 206740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    gaccacagaaaccagtcaag 52
             ||||||||||||||||||||
Sbjct: 69194 gaccacagaaaccagtcaag 69175


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,349,566
Number of Sequences: 3902068
Number of extensions: 3349566
Number of successful extensions: 88736
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88668
Number of HSP's gapped (non-prelim): 63
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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