>YNV5_CAEEL (P34568) Hypothetical protein T16H12.5|
          Length = 451

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 103 QLINWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAGGPFP*SASPGEPLIDV 267
           +L++  VG G  +  S G+G +            HGR+  P P SAS G+PL+ V
Sbjct: 39  RLVSMEVGMGNDEVVSSGSGNS-----------AHGRSISPSPSSASHGDPLLPV 82

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
 Frame = +1

Query: 124  GSGMQDF-SSHGAGRARSP-----VCYGVQRPCHGRAGGPF-----P*SASPGEPLIDVV 270
            GSG++    S GA  A  P     V   V  P  GRAG P      P +A PG   + + 
Sbjct: 893  GSGVRSGPESEGAALAPGPPVLFVVAVAVAVPAEGRAGEPLVLLAVPGAAGPGRAALLLA 952

Query: 271  PRKRWQR 291
            P  RW R
Sbjct: 953  PLGRWVR 959

>CI079_HUMAN (Q6ZUB1) Protein C9orf79|
          Length = 1445

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 25/82 (30%), Positives = 33/82 (40%)
 Frame = -1

Query: 322  PRHPTAPRRCTVAIVFAEQHRLVAPPVKQIKGTARRLSHDRASAHRNTPGSERDLPHEMR 143
            P++     R T   V      L APP +Q +G  R     R S   +T G     P   +
Sbjct: 899  PQNGPGDNRTTSKSVPTVSGPLAAPPPEQ-EGVQRP---PRGSQSADTHGRSEAFPTGHK 954

Query: 142  NPACRSPPTS*LIGQGRYSFTV 77
               C  PPT  L+G+   S TV
Sbjct: 955  GRGCSQPPTCSLVGRTWQSRTV 976

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 121 VGSGMQDFSSHGA-GRARSPVCYGVQRPCHGRAGGPFP*SASPG 249
           +G+G++D +  G  GRAR+P       P H  AGGP     SPG
Sbjct: 218 LGTGVRDPAPRGGRGRARTP------GPVHSAAGGPGSRRRSPG 255

>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
            chain)
          Length = 1798

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 49   SSSKLNCISIL*NYICPAQLINWW---VGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAG 219
            SS +  C+  +    C     N+W    G G Q  + H + RAR P C      CH RAG
Sbjct: 1061 SSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCACHPS-RARGPTCNEFTGQCHCRAG 1119

>POP1_YEAST (P41812) Ribonucleases P/MRP protein subunit POP1 (EC 3.1.26.5)|
           (RNases P/MRP 100.4 kDa subunit) (RNA-processing protein
           POP1)
          Length = 875

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 316 HPTAPRRCTVAIVFAEQHRLVAPPVKQIKGTARRL--SHDRASAHRNTPGSE 167
           H   P+RCT A    +   L AP  K++  + R+   S D  S H N P  E
Sbjct: 437 HNALPQRCTFAFEAIDPRHLAAP--KKLNDSQRKTVNSDDILSLHENYPQDE 486

>LDB2_MOUSE (O55203) LIM domain-binding protein 2 (Carboxyl-terminal LIM|
           domain-binding protein 1) (CLIM-1) (LIM-domain-binding
           factor CLIM1)
          Length = 373

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 319 RHPT---APRRCTVAIVFAEQHRLVAPPVKQIK--GTARRLSHDRASAHRNTPG 173
           RH T   +PR C    +F +  R+VAPP +  +   T RR   +  S+  N+ G
Sbjct: 219 RHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSG 272

>PGTL_PELAC (P80563) Pyrogallol hydroxytransferase large subunit (EC 1.97.1.2)|
           (Transhydroxylase alpha subunit)
          Length = 874

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
 Frame = +2

Query: 116 GGWGAACRISH----LMGQVALA 172
           GGWG ACR SH      G +ALA
Sbjct: 351 GGWGGACRASHGIEWARGMIALA 373

>ISPE_NOCFA (Q5YPY8) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 307

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 122 WGAACRISHLMGQVALAPRCVTVCRG-PVMGEPAGRSLD 235
           W AA R++HL+G+  L    + + +G PV G  AG S D
Sbjct: 76  WKAAVRLAHLVGRAPLVE--IVIDKGIPVAGGMAGGSAD 112

>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4|
            precursor (LTBP-4)
          Length = 1666

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 38   CQNILPQNSTVFLYCKTISALPN*LTGGWGAACRISHLMG 157
            C NIL +N T    C T+         GWG+ CRI    G
Sbjct: 1235 CDNILARNVTWQECCCTVGE-------GWGSGCRIQQCPG 1267

>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 476

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 122 WGAACRISHLMGQVALAPRCVTVCRGPVMGEPAGRSLDLL 241
           +G AC+  H MG +  +P  + +   P+   P G S+  L
Sbjct: 370 YGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIATL 409

>LDB2_HUMAN (O43679) LIM domain-binding protein 2 (Carboxyl-terminal LIM|
           domain-binding protein 1) (CLIM-1) (LIM domain-binding
           factor CLIM1)
          Length = 373

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
 Frame = -1

Query: 319 RHPT---APRRCTVAIVFAEQHRLVAPPV----------KQIKGTARRLSHDRASAHRNT 179
           RH T   +PR C    +F +  R+VAPP           ++ K +    S+  A  + N+
Sbjct: 219 RHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANS 278

Query: 178 PGSER 164
            GS++
Sbjct: 279 TGSKK 283

>VANA_PSEUH (O05616) Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)|
           (4-hydroxy-3-methoxybenzoate demethylase)
          Length = 354

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 223 PFP*SASPGEPLIDVVPRKRWQRCTFLGP 309
           PF  +A  G  L D VP  RWQ C F  P
Sbjct: 197 PFWRAALRGNGLADDVPVDRWQICRFAPP 225

>CRTC_RHOCA (P17058) Hydroxyneurosporene dehydrogenase (EC 1.-.-.-)|
           (Hydroxyneurosporene synthase)
          Length = 281

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 122 WGAACRISHLMGQVALAPRCVT 187
           WGA  ++  L G+V L PR VT
Sbjct: 76  WGALPKLGKLKGRVVLTPRAVT 97

>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 232 KGTARRLSHDRASAHRNTPGSERDLPHEMRNPACRSPP 119
           +G+  R S    ++HRN  G+     H+ ++P    PP
Sbjct: 42  RGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPP 79

>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 232 KGTARRLSHDRASAHRNTPGSERDLPHEMRNPACRSPP 119
           +G+  R S    ++HRN  G+     H+ ++P    PP
Sbjct: 42  RGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPP 79

>SMOO_HUMAN (P53814) Smoothelin|
          Length = 917

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 196 RPCHGRAGGPFP*SASPGEPL 258
           RP   RAGGP   S  PG PL
Sbjct: 424 RPLENRAGGPVARSEEPGAPL 444

>LAMB2_MOUSE (Q61292) Laminin beta-2 chain precursor (S-laminin) (S-LAM)|
          Length = 1799

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 94   CPAQLINWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAG 219
            C     N+  G G Q  + H + RAR P C      CH  AG
Sbjct: 1080 CAPNFWNFTSGRGCQPCACHPS-RARGPTCNEFTGQCHCHAG 1120

>ASXL1_HUMAN (Q8IXJ9) Putative Polycomb group protein ASXL1 (Additional sex|
           combs-like protein 1)
          Length = 1541

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 293 HRCHRFRGTTSISGSPGEADQGNG 222
           H CHR   TT+I G  G    G G
Sbjct: 630 HHCHREAATTAIGGGGGPGGGGGG 653

>EVC_MOUSE (P57680) Ellis-van Creveld syndrome protein homolog|
          Length = 1005

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -1

Query: 319 RHPTAPRRCTVAI-----VFAEQHRLVAPPVKQIKGTARRLSHDRASAHRNTPGSERDLP 155
           R   AP  C  ++      FA + R+V P  ++ +  A   SH   S H N   +   LP
Sbjct: 89  RDEDAPEVCEPSLSGNITAFALKARVVYPINQKFRPLADGSSHP--SLHENLTQAAAILP 146

Query: 154 HEMRNPACRSPPTS 113
           H    PA  SP +S
Sbjct: 147 HLPHQPAEASPASS 160

>LAMB2_RAT (P15800) Laminin beta-2 chain precursor (S-laminin) (Laminin chain|
            B3)
          Length = 1801

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 94   CPAQLINWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAG 219
            C     N+  G G Q  + H + RAR P C      CH  AG
Sbjct: 1082 CAPNFWNFTSGRGCQPCACHPS-RARGPTCNEFTGQCHCHAG 1122

>VANA_PSES9 (P12609) Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)|
           (4-hydroxy-3-methoxybenzoate demethylase)
          Length = 329

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 223 PFP*SASPGEPLIDVVPRKRWQRCTFLGP 309
           PF  +A  G  L D VP  RWQ C F  P
Sbjct: 174 PFWRAALRGNGLADDVPVDRWQICRFTPP 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,752,256
Number of Sequences: 219361
Number of extensions: 1314638
Number of successful extensions: 3434
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3432
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)