ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27c08 |
|---|---|
| Clone Library Name | barley_pub |
>HETM_ANASP (P37693) Polyketide synthase hetM| Length = 506 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -2 Query: 201 HRERLVGGYPLAGGPRGH-FLGRGVDTCLNIGCFPHLE 91 HR L+GG G H F+ V CL +GCFP +E Sbjct: 323 HRPPLIGGDSETGIGNTHDFINLMVKGCLQMGCFPDVE 360
>ATS6_HUMAN (Q9UKP5) ADAMTS-6 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 6) (ADAM-TS 6) (ADAM-TS6) Length = 860 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 211 DCIPSGTTSWGLPPGWGTPWTLSWAWC 131 DC+P GT + GWG PW+L W C Sbjct: 498 DCVPFGTWPQSIDGGWG-PWSL-WGEC 522
>CGRE1_RAT (P97586) Cell growth regulator with EF hand domain 1 (Cell growth| regulatory gene 11 protein) Length = 281 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3 Query: 162 PQPGGNPQLVVPDGIQSMTQISIGQVGKLGSQIE 263 PQP G+ L+ +QS TQ S+G ++ SQ+E Sbjct: 161 PQPAGSQPLLANSPLQSETQQSLGTKEEITSQVE 194
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +3 Query: 162 PQPGGNPQLVVPDGIQSMTQISIGQVGKLGSQIEFLPRKPLSIPPAS 302 P P + VP G+ S+ S+G G ++ +P+K IPPAS Sbjct: 317 PPPTSPSRTAVPPGLSSLPLTSVGNTG-----MKKVPKKLEEIPPAS 358
>CGRE1_MOUSE (Q8R1U2) Cell growth regulator with EF hand domain 1 (Cell growth| regulatory gene 11 protein) Length = 281 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 162 PQPGGNPQLVVPDGIQSMTQISIGQVGKLGSQIE 263 PQP G+ L+ +QS TQ S+G ++ Q+E Sbjct: 160 PQPAGSQPLLANSPLQSETQQSLGTKEEIRGQVE 193
>GLMS_LISMO (Q8Y915) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 600 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 8 DEYL*RRVNHVVSCHTGYHLQKVKKKKPSRCGKHPMFRHVS 130 DE L H+V+C T YH V K + K P+ HVS Sbjct: 283 DEILSSDRIHIVACGTSYHAGLVGKNLIEKMAKIPVEVHVS 323
>GLMS_LISMF (Q722H1) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 600 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 8 DEYL*RRVNHVVSCHTGYHLQKVKKKKPSRCGKHPMFRHVS 130 DE L H+V+C T YH V K + K P+ HVS Sbjct: 283 DEILSSDRIHIVACGTSYHAGLVGKNLIEKMAKIPVEVHVS 323
>GLMS_LISIN (Q92DS8) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 600 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 8 DEYL*RRVNHVVSCHTGYHLQKVKKKKPSRCGKHPMFRHVS 130 DE L H+V+C T YH V K + K P+ HVS Sbjct: 283 DEILSSDRIHIVACGTSYHAGLVGKNLIEKMAKIPVEVHVS 323
>YCE2_YEAST (P25572) Hypothetical protein YCL042W| Length = 119 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = -1 Query: 205 IPSGTTSWGLPPGWGTPWTLSWAWCRHMSEHWVLSAPRRF 86 I SG + G P G LSWAWC + W L R + Sbjct: 15 IISGVPTDGQPLSGGP---LSWAWCHTTLKRWALMKTRPY 51
>RL20_LISMO (P66103) 50S ribosomal protein L20| Length = 119 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 287 RKWFSRQKLNLAAELTDLTY*DLRHGLYSIGND 189 R W +R +N AA + DL+Y L HGL G D Sbjct: 59 RLWIAR--INAAARMQDLSYSKLMHGLKLAGID 89
>RL20_LISMF (Q71YN5) 50S ribosomal protein L20| Length = 119 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 287 RKWFSRQKLNLAAELTDLTY*DLRHGLYSIGND 189 R W +R +N AA + DL+Y L HGL G D Sbjct: 59 RLWIAR--INAAARMQDLSYSKLMHGLKLAGID 89
>RL20_LISIN (P66104) 50S ribosomal protein L20| Length = 119 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 287 RKWFSRQKLNLAAELTDLTY*DLRHGLYSIGND 189 R W +R +N AA + DL+Y L HGL G D Sbjct: 59 RLWIAR--INAAARMQDLSYSKLMHGLKLAGID 89
>GBPA_SHEON (Q8EHY2) GlcNac-binding protein A precursor| Length = 475 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -1 Query: 208 CIPSGTTSWGLPPGWGTPWTLSW 140 C+ T+ G PG G WT++W Sbjct: 450 CVQWSPTATGFEPGIGNSWTMAW 472
>RS15_METJA (P54012) 30S ribosomal protein S15P/S13e| Length = 153 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = +3 Query: 195 PDGIQSMTQISIGQVGKLGSQIEFLPRKPLSIPPASM--GNSFFFIWQEHAWYPKLPD 362 P+ ++ + + + + G +QI + R IP + G I +EH YPK+P+ Sbjct: 30 PEQVEQLV-VELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVPE 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,085,884 Number of Sequences: 219361 Number of extensions: 1448365 Number of successful extensions: 4241 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4237 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
