ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_426411.1| PREDICTED: Gallus gallus similar to lung cancer... 42 1.5
2emb|AL356961.13| Human DNA sequence from clone RP11-450H6 on chr... 42 1.5
3gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosom... 40 5.7
4gb|AC116772.6| Mus musculus chromosome 8, clone RP23-428C21, com... 40 5.7
5emb|CR932439.7| Zebrafish DNA sequence from clone DKEY-227C19 in... 40 5.7
6emb|Z85995.2|HS384D21 Human DNA sequence from clone RP3-384D21 o... 40 5.7
7emb|CR384100.8| Zebrafish DNA sequence from clone DKEYP-22H2 in ... 40 5.7
8gb|AC163630.5| Mus musculus BAC clone RP23-139M2 from chromosome... 40 5.7
9gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complet... 40 5.7

>ref|XM_426411.1| PREDICTED: Gallus gallus similar to lung cancer metastasis-related
           protein 1 homolog (LOC428854), mRNA
          Length = 648

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 393 agaagaagaacaagcacaagc 413
           |||||||||||||||||||||
Sbjct: 305 agaagaagaacaagcacaagc 325



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>emb|AL356961.13| Human DNA sequence from clone RP11-450H6 on chromosome 13 Contains two
             novel genes and two CpG islands, complete sequence
          Length = 99469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 152   ccacggggtcccccagccagggggt 176
             ||||||||||||||||||| |||||
Sbjct: 47890 ccacggggtcccccagccacggggt 47914



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>gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosome 16, complete sequence
          Length = 199601

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     gtctcatgccacacgggcta 60
              ||||||||||||||||||||
Sbjct: 163729 gtctcatgccacacgggcta 163710



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>gb|AC116772.6| Mus musculus chromosome 8, clone RP23-428C21, complete sequence
          Length = 232691

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 267    ctgccgagaaaaccactttctata 290
              ||||| ||||||||||||||||||
Sbjct: 193031 ctgccaagaaaaccactttctata 193008



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>emb|CR932439.7| Zebrafish DNA sequence from clone DKEY-227C19 in linkage group 13,
           complete sequence
          Length = 9805

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 354 ttacctgacactgaagagta 373
           ||||||||||||||||||||
Sbjct: 420 ttacctgacactgaagagta 401



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>emb|Z85995.2|HS384D21 Human DNA sequence from clone RP3-384D21 on chromosome Xq25-26.1
             Contains part of the ODZ1 gene for odz, odd Oz/ten-m
             homolog 1(Drosophila) and a ribosomal protein S26 (RPS26)
             pseudogene, complete sequence
          Length = 80696

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   gagtttctgccgagaaaaccactt 284
             ||||||||||||||||| ||||||
Sbjct: 74217 gagtttctgccgagaaatccactt 74194



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>emb|CR384100.8| Zebrafish DNA sequence from clone DKEYP-22H2 in linkage group 13,
              complete sequence
          Length = 172918

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    ttacctgacactgaagagta 373
              ||||||||||||||||||||
Sbjct: 171348 ttacctgacactgaagagta 171329



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>gb|AC163630.5| Mus musculus BAC clone RP23-139M2 from chromosome 16, complete sequence
          Length = 231703

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    gtctcatgccacacgggcta 60
             ||||||||||||||||||||
Sbjct: 39813 gtctcatgccacacgggcta 39794



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>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence
          Length = 197641

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 267   ctgccgagaaaaccactttctata 290
             ||||| ||||||||||||||||||
Sbjct: 28066 ctgccaagaaaaccactttctata 28043


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,952,889
Number of Sequences: 3902068
Number of extensions: 2952889
Number of successful extensions: 55921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55907
Number of HSP's gapped (non-prelim): 14
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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