ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27c06 |
|---|---|
| Clone Library Name | barley_pub |
>DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5)| Length = 915 Score = 30.8 bits (68), Expect = 0.83 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 9/65 (13%) Frame = +2 Query: 125 PYSPLH---SIPGPASTT---SWSLLNNSW---RYRAEHQS*SEITMLEMANGLLNPPAT 277 PYSP H +P A+TT S SL +++W + E S ++ L +A G +P Sbjct: 70 PYSPRHESWGLPSNANTTLLGSSSLTSSNWFPFTDQKETSSNEILSSLNLAAGSSSPALP 129 Query: 278 STPTR 292 STP+R Sbjct: 130 STPSR 134
>CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1)| Length = 259 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +2 Query: 107 AK*SSAPYSPLHSIPGPASTTSWSLLNNSWRYRAEH 214 AK SAPY +PG SLLNN W A H Sbjct: 39 AKNGSAPYQVSLQVPGWGHNCGGSLLNNRWVLTAAH 74
>CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1)| Length = 258 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +2 Query: 107 AK*SSAPYSPLHSIPGPASTTSWSLLNNSWRYRAEH 214 AK SAPY +PG SLLNN W A H Sbjct: 39 AKNGSAPYQVSLQVPGWGHNCGGSLLNNRWVLTAAH 74
>Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22)| Length = 220 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Frame = +3 Query: 33 FKRKDTTSSLLQER*HTAHAY----PQ-HQQNNLLHLTPPYTPFQDQPRLPAGRF*TIHG 197 F RK+T S + R H Y PQ HQ LHLT P P+ R PA G Sbjct: 94 FHRKETES--IGGRAHRVPTYYNRPPQPHQPPGYLHLTSPAAPY----RPPAA-----SG 142 Query: 198 DTEQSTNPN 224 D E ++NP+ Sbjct: 143 DEEDTSNPS 151
>CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1)| Length = 505 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +3 Query: 9 KARLKTSIFKRKDTTSSLLQER*HTAHAYPQHQQ 110 +A +KT +F DTTSS + + YP+HQQ Sbjct: 305 QAEVKTFMFAGHDTTSSAISWILYCLAKYPEHQQ 338
>GATA7_ARATH (Q9SKN6) Putative GATA transcription factor 7| Length = 315 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 118 FCTLLPPTLHSRTSLDYQLVAFEQFMEIQSRAPILI 225 F L+PP L SL Y+ Q +++Q PIL+ Sbjct: 48 FQKLVPPPLDELMSLSYEFTCNGQRVQVQKHVPILL 83
>MSHM_SARGL (O63852) Mitochondrial MutS protein homolog| Length = 982 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +2 Query: 14 TIKNKYFQKEGYNIFSSSRKMT 79 +IK +YF KEGY SS+K+T Sbjct: 530 SIKAEYFNKEGYAFSISSKKLT 551
>P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 391 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 92 IPATPAK*SSAPYSPLHSIPGPASTTSWSL 181 +PA PA + AP +P + P PA TSW L Sbjct: 63 VPAAPAPEAPAPAAPALAAPAPA--TSWPL 90
>KNRL_DROME (P13054) Knirps-related protein| Length = 647 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/28 (32%), Positives = 19/28 (67%) Frame = +3 Query: 93 YPQHQQNNLLHLTPPYTPFQDQPRLPAG 176 + +++ ++ +TPP++P Q + R PAG Sbjct: 460 HDDEEEDLVVSMTPPHSPAQQEERTPAG 487
>TAP_DROME (O16867) Basic helix-loop-helix neural transcription factor TAP| (Target of Poxn protein) (Protein biparous) Length = 398 Score = 27.3 bits (59), Expect = 9.2 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Frame = +2 Query: 26 KYFQKEGYNIFSSSRKMTH-SPCIPATPAK*SSAPYSPLHSIPGPASTTSWSLLNNSWRY 202 K F+ E SS R++ +P PA P S + + PA LL+ S Sbjct: 32 KSFETEAQ--LSSRRRLDFGTPPTPAIPQPYSGGTWDAVPLSSPPAGFVG--LLDTS--- 84 Query: 203 RAEHQS*SEITMLE-----MANGLLNPPATSTPTR 292 + H + S T++E NG+ +PP TSTP + Sbjct: 85 -SNHSTRSGRTLVEHLNSRATNGVFDPPLTSTPVK 118
>COX1_EMENI (P00402) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 567 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1 Query: 73 DDTQPMHTRNTSKIIFCTLLPPTLHSRTSLDYQ 171 D Q + TRN S + +C PP H+ SL Q Sbjct: 534 DTFQVLFTRNNSSLEWCLTSPPKPHAFASLPLQ 566
>WRK32_ARATH (P59583) Probable WRKY transcription factor 32 (WRKY DNA-binding| protein 32) Length = 466 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 50 NIFSSSRKMTHSPCIPATPAK*SSAPYSPLHSIP 151 ++ +SS +T +PC+ PA S+A PL S+P Sbjct: 109 SLAASSDSLTVTPCLSLDPATASTAQDLPLVSVP 142
>YK82_SCHPO (Q9HGP4) Hypothetical bromodomain protein C631.02| Length = 727 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Frame = +3 Query: 120 LHLTPPYTPFQDQ----PRLPAGRF*TIHGDTEQ 209 LH TPPYT F D+ P P+ T+ GD+++ Sbjct: 88 LHPTPPYTNFDDESPSSPTHPSVSNITVDGDSKK 121
>MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (BMK1 kinase) Length = 806 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +2 Query: 95 PATPAK*SSAPYSPLHSIPGPAS 163 P P S+ P P SIPGPAS Sbjct: 602 PTGPVSQSTGPLQPAGSIPGPAS 624 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,116,574 Number of Sequences: 219361 Number of extensions: 1250031 Number of successful extensions: 2916 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2916 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
