Clone Name | rbastl27c05 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009400.1| Triticum aestivum clone wlm96.pk044.g9:fis, full insert mRNA sequence Length = 1993 Score = 583 bits (294), Expect = e-163 Identities = 392/425 (92%), Gaps = 16/425 (3%) Strand = Plus / Minus Query: 39 aaatctgatcaaacttgccataatcaaccaacacctacttttatctagtccctctacttt 98 ||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||| Sbjct: 1975 aaatctgatcaaacttgttataatcaaccaatacctactttgatctagcccctctacttt 1916 Query: 99 ccataactcataagtacaagacttgccatgtactaa---atcaacacattcaatacctcc 155 ||||||||||||||||||| ||||||||| |||||||||||||||| |||| Sbjct: 1915 -------tcataagtacaagacttgctatgtactaataaatcaacacattcaatatctcc 1863 Query: 156 tttgatctagtagctctactcatgagtataagaacttgctatgtactgaattaacacact 215 ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1862 tttgatctagttgctctactcacaagtataagaacttgctatgtactgaattaacacact 1803 Query: 216 ttccgcaaaaagaac------ttgtggctggtttgtctacagaagttaaaaattctcctt 269 ||| ||||||||| | |||||||||| | |||||||||||||||||||||||||| Sbjct: 1802 ttcggcaaaaagagcaacttcttgtggctgggtcgtctacagaagttaaaaattctcctt 1743 Query: 270 gtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagctcacgcagctc 329 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1742 gtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaaggtcacgcagctc 1683 Query: 330 ctttgttagcaccggtgcaccgcagtagaatactccgacacgctgttcacggtggttgag 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1682 ctttgttagcaccggtgcaccgcagtagaatactccgacacgctgttcacggtggttgag 1623 Query: 390 ggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtcttgacacgggt 449 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 1622 ggcgatacgcttgtagacgttgcgccagtttggtcgcgcaaagtgggtcttgacacgggt 1563 Query: 450 gccgg 454 ||||| Sbjct: 1562 gccgg 1558
>gb|BT009119.1| Triticum aestivum clone wl1n.pk0005.c8:fis, full insert mRNA sequence Length = 543 Score = 161 bits (81), Expect = 2e-36 Identities = 165/193 (85%) Strand = Plus / Minus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagctca 321 |||||||||||||||||||| || ||||| ||||| | |||||| || || || ||||| Sbjct: 370 ttctccttgtggaactcgaacttggtgttggtcttccgcgagaagtcctgcgccagctcg 311 Query: 322 cgcagctcctttgttagcaccggtgcaccgcagtagaatactccgacacgctgttcacgg 381 ||||||||||| || |||||||| || ||||||||||| |||||||| ||||| | || Sbjct: 310 cgcagctccttggtcagcaccggggcgccgcagtagaacactccgacgcgctggttctgg 251 Query: 382 tggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtcttg 441 |||||||| ||||| |||||||||||||||||||| || || | ||| |||||||||||| Sbjct: 250 tggttgagcgcgatgcgcttgtagacgttgcgccagttaggcctggcgaagtgggtcttg 191 Query: 442 acacgggtgccgg 454 || |||||||||| Sbjct: 190 acgcgggtgccgg 178
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08, complete sequence Length = 197156 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 259 aaattctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagc 318 ||||||||||||||||| |||||||| ||| | |||||||||||||||||||| || ||| Sbjct: 188373 aaattctccttgtggaagtcgaatttcgtgctcgtctttctcgagaaatcttgagcgagc 188432 Query: 319 tcacgcagctcctttgttagcaccggtgcaccgcagtagaa 359 |||||||| ||||| || |||||||| || || |||||||| Sbjct: 188433 tcacgcagttccttcgtcagcaccggcgcgccacagtagaa 188473 Score = 103 bits (52), Expect = 5e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 379 cggtggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtc 438 ||||||||||||||||| |||||||||||||||||||| || || ||||| ||||||||| Sbjct: 189599 cggtggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtc 189658 Query: 439 ttgacacgggtgccgg 454 ||||| |||||||||| Sbjct: 189659 ttgacgcgggtgccgg 189674
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 259 aaattctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagc 318 ||||||||||||||||| |||||||| ||| | |||||||||||||||||||| || ||| Sbjct: 27728 aaattctccttgtggaagtcgaatttcgtgctcgtctttctcgagaaatcttgagcgagc 27787 Query: 319 tcacgcagctcctttgttagcaccggtgcaccgcagtagaa 359 |||||||| ||||| || |||||||| || || |||||||| Sbjct: 27788 tcacgcagttccttcgtcagcaccggcgcgccacagtagaa 27828 Score = 103 bits (52), Expect = 5e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 379 cggtggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtc 438 ||||||||||||||||| |||||||||||||||||||| || || ||||| ||||||||| Sbjct: 28954 cggtggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtc 29013 Query: 439 ttgacacgggtgccgg 454 ||||| |||||||||| Sbjct: 29014 ttgacgcgggtgccgg 29029
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 259 aaattctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagc 318 ||||||||||||||||| |||||||| ||| | |||||||||||||||||||| || ||| Sbjct: 18924357 aaattctccttgtggaagtcgaatttcgtgctcgtctttctcgagaaatcttgagcgagc 18924416 Query: 319 tcacgcagctcctttgttagcaccggtgcaccgcagtagaa 359 |||||||| ||||| || |||||||| || || |||||||| Sbjct: 18924417 tcacgcagttccttcgtcagcaccggcgcgccacagtagaa 18924457 Score = 103 bits (52), Expect = 5e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 379 cggtggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtc 438 ||||||||||||||||| |||||||||||||||||||| || || ||||| ||||||||| Sbjct: 18925583 cggtggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtc 18925642 Query: 439 ttgacacgggtgccgg 454 ||||| |||||||||| Sbjct: 18925643 ttgacgcgggtgccgg 18925658
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 259 aaattctccttgtggaactcgaattttgtgtttgtctttctcgagaaatcttgtgcaagc 318 ||||||||||||||||| |||||||| ||| | |||||||||||||||||||| || ||| Sbjct: 19083179 aaattctccttgtggaagtcgaatttcgtgctcgtctttctcgagaaatcttgagcgagc 19083238 Query: 319 tcacgcagctcctttgttagcaccggtgcaccgcagtagaa 359 |||||||| ||||| || |||||||| || || |||||||| Sbjct: 19083239 tcacgcagttccttcgtcagcaccggcgcgccacagtagaa 19083279 Score = 103 bits (52), Expect = 5e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 379 cggtggttgagggcgatacgcttgtagacgttgcgccaatttggtcgggcaaagtgggtc 438 ||||||||||||||||| |||||||||||||||||||| || || ||||| ||||||||| Sbjct: 19084405 cggtggttgagggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtc 19084464 Query: 439 ttgacacgggtgccgg 454 ||||| |||||||||| Sbjct: 19084465 ttgacgcgggtgccgg 19084480
>gb|AY603975.1| Oryza sativa (indica cultivar-group) respiratory burst oxidase protein B (rbohB) mRNA, complete cds Length = 3334 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||| || ||| ||||||||||||| Sbjct: 3006 ttctccttgtggaaatcaaatcttgtgtttgtctt 2972
>gb|BT009144.1| Triticum aestivum clone wl1n.pk0054.d8:fis, full insert mRNA sequence Length = 876 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 ||||||||||||||||| || |||||||| ||||| Sbjct: 567 ttctccttgtggaactcaaactttgtgttcgtctt 533
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||| || ||| ||||||||||||| Sbjct: 14604506 ttctccttgtggaaatcaaatcttgtgtttgtctt 14604540
>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1164G11 Length = 142699 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||| || ||| ||||||||||||| Sbjct: 85883 ttctccttgtggaaatcaaatcttgtgtttgtctt 85917
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||| || ||| ||||||||||||| Sbjct: 163819 ttctccttgtggaaatcaaatcttgtgtttgtctt 163853
>dbj|AK121916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C16, full insert sequence Length = 3255 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||| || ||| ||||||||||||| Sbjct: 3079 ttctccttgtggaaatcaaatcttgtgtttgtctt 3045
>dbj|AK099714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G19, full insert sequence Length = 3731 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||| || ||| ||||||||||||| Sbjct: 3598 ttctccttgtggaaatcaaatcttgtgtttgtctt 3564
>dbj|AK065117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O12, full insert sequence Length = 3198 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||| || ||| ||||||||||||| Sbjct: 3082 ttctccttgtggaaatcaaatcttgtgtttgtctt 3048
>dbj|AK060770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B03, full insert sequence Length = 2978 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||| || ||| ||||||||||||| Sbjct: 2719 ttctccttgtggaaatcaaatcttgtgtttgtctt 2685
>gb|AY107147.1| Zea mays PCO125081 mRNA sequence Length = 938 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 262 ttctccttgtggaactcgaattttgtgtttgtctt 296 |||||||||||||||||||| || || |||||||| Sbjct: 638 ttctccttgtggaactcgaacttagtatttgtctt 604
>emb|CT010504.7| M.truncatula DNA sequence from clone MTH2-28A3 on chromosome 3, complete sequence Length = 114882 Score = 44.1 bits (22), Expect = 0.39 Identities = 34/38 (89%) Strand = Plus / Minus Query: 259 aaattctccttgtggaactcgaattttgtgtttgtctt 296 ||||||||||||||||| || ||||| ||| ||||||| Sbjct: 86413 aaattctccttgtggaaatcaaatttggtgcttgtctt 86376
>gb|AC121344.5| Homo sapiens X BAC RP11-408N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111500 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 ttattattcttctaggcaaagttga 36 |||||||||| |||||||||||||| Sbjct: 46191 ttattattctcctaggcaaagttga 46167
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tgtgcaagctcacgcagctc 329 |||||||||||||||||||| Sbjct: 1139119 tgtgcaagctcacgcagctc 1139100
>gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, complete sequence Length = 218449 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tacagaagttaaaaattctc 266 |||||||||||||||||||| Sbjct: 81321 tacagaagttaaaaattctc 81340
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 aagttaaaaattctccttgt 271 |||||||||||||||||||| Sbjct: 8634912 aagttaaaaattctccttgt 8634893
>ref|XM_315621.2| Anopheles gambiae str. PEST ENSANGP00000007262 (ENSANGG00000005477), partial mRNA Length = 1923 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 426 ggcaaagtgggtcttgacacgggt 449 |||||||| ||||||||||||||| Sbjct: 1095 ggcaaagttggtcttgacacgggt 1072
>dbj|AP000797.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-36B5, complete sequence Length = 148490 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 taagaacttgctatgtactg 203 |||||||||||||||||||| Sbjct: 67835 taagaacttgctatgtactg 67854
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 aagttaaaaattctccttgt 271 |||||||||||||||||||| Sbjct: 8634795 aagttaaaaattctccttgt 8634776
>emb|AL844877.2|CNS08CB0 Oryza sativa chromosome 12, . BAC OSJNBb0034B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125000 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 aagttaaaaattctccttgt 271 |||||||||||||||||||| Sbjct: 97659 aagttaaaaattctccttgt 97640
>emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chromosome X, complete sequence Length = 141025 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tttgtctacagaagttaaaa 260 |||||||||||||||||||| Sbjct: 33596 tttgtctacagaagttaaaa 33577 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,652,767 Number of Sequences: 3902068 Number of extensions: 3652767 Number of successful extensions: 79065 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78898 Number of HSP's gapped (non-prelim): 165 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)