>ZMYM3_HUMAN (Q14202) Zinc finger MYM-type protein 3 (Zinc finger protein 261)|
           (DXS6673E protein)
          Length = 1370

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 47  STCMQTRNTPCVHEKDDRPTHVFCITYIYLPLQKVHVSNGV 169
           S C ++ + PC + K DR  + FC    +   Q+     G+
Sbjct: 547 SFCRRSLSDPCYYNKVDRTVYQFCSPSCWTKFQRTSPEGGI 587

>Y531_PASMU (Q9CNA2) Hypothetical protein PM0531|
          Length = 179

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 25/105 (23%), Positives = 43/105 (40%)
 Frame = +3

Query: 3   QRTEFELAVMLSQVLAHACKHGTRLVFMKKTTDRPTSFA*PISIYRYRRFMFQMVLLYKX 182
           +  + ++ ++LS V  +A +       ++K   R TS+     +YR + F       +  
Sbjct: 77  ENPQHDVCIVLSNVGGNAKE-------IEKVVARATSYGLHTEVYRLQNFFPNT---HGV 126

Query: 183 XXXXXYNTRQHLHKAPETEQKETLAT*INPAFQSFCRTRHKKQAQ 317
                Y    +LH   +  Q E L   I P  ++ CR   K QAQ
Sbjct: 127 DAQVVYE--MYLHLCDQPVQNEILLPPIQPMTKAICREIKKLQAQ 169

>LHX61_MOUSE (Q9R1R0) LIM/homeobox protein Lhx6.1|
          Length = 363

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 288 CRTRHKKQAQMSPFWPAGYALTYLPT 365
           CR RHKK     P  P+G   T LP+
Sbjct: 270 CRARHKKHTPQHPVPPSGAPPTRLPS 295

>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9|
           (Pseudo-response regulator 9)
          Length = 468

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 399 RKKNSANLYRHMWASMSRRSPPAKMATSAP 310
           RK    NL++H+W  ++ R  P   A S P
Sbjct: 144 RKNELKNLWQHVWRRLTLRDDPTAHAQSLP 173

>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa|
           polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2)
           (RPC2)
          Length = 1133

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 401 LERKTQQTCTGICGQVCQGVARRPKWRH 318
           L+R T QT   + G +     R+P WRH
Sbjct: 779 LKRYTNQTFDKVMGPMLDAATRKPIWRH 806

>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa|
           polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2)
           (RPC2)
          Length = 1133

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 401 LERKTQQTCTGICGQVCQGVARRPKWRH 318
           L+R T QT   + G +     R+P WRH
Sbjct: 779 LKRYTNQTFDKVMGPMLDAATRKPIWRH 806

>YPL2_CAEEL (O44440) Protein yippee-like B0546.4|
          Length = 161

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -1

Query: 402 TRKKNSANLYRHMWASMSRRSPPAKMATS----APVFCASCDRKIG 277
           T     A L++  W  +  R    KM T       VFC +C++K+G
Sbjct: 37  TGSTGPATLFKRAWNVVYGRCEHRKMTTGWHTVRDVFCVTCNQKLG 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,350,820
Number of Sequences: 219361
Number of extensions: 933444
Number of successful extensions: 2329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2328
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)