ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 50 0.006
2gb|AC084550.1|CBRG33D04 Caenorhabditis briggsae cosmid G33D04, c... 44 0.34
3ref|XM_479973.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
4gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, com... 42 1.4
5ref|XM_806444.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.4
6ref|XM_804760.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.4
7ref|XM_650061.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 1.4
8ref|XM_650395.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 1.4
9emb|AL035689.26|HS187J11 Human DNA sequence from clone RP1-187J1... 42 1.4
10gb|AC032044.28| Homo sapiens chromosome 17, clone RP11-818O24, c... 42 1.4
11emb|BX901884.7| Zebrafish DNA sequence from clone DKEY-89E13 in ... 42 1.4
12dbj|AB108682.1| Streptomyces griseus sigF, sigL genes for sigma ... 42 1.4
13dbj|AK111729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
14dbj|AK100455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
15gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, com... 42 1.4
16ref|NM_001036951.1| Arabidopsis thaliana acetyl-CoA C-acetyltran... 40 5.4
17ref|NM_128212.2| Arabidopsis thaliana HO2; heme oxygenase (decyc... 40 5.4
18ref|NM_105853.3| Arabidopsis thaliana unknown protein AT1G71950 ... 40 5.4
19ref|NM_125538.2| Arabidopsis thaliana unknown protein AT5G61450 ... 40 5.4
20gb|AC024776.1| Caenorhabditis elegans cosmid Y41D4B, complete se... 40 5.4
21ref|XM_714735.1| Candida albicans SC5314 hypothetical protein (C... 40 5.4
22ref|XM_714618.1| Candida albicans SC5314 hypothetical protein (C... 40 5.4
23ref|XM_705894.1| Candida albicans SC5314 myosin type 1 (CaO19.73... 40 5.4
24ref|XM_705881.1| Candida albicans SC5314 myosin type 1 (CaO19.83... 40 5.4
25gb|AY812265.1| Schistosoma japonicum SJCHGC08306 protein mRNA, p... 40 5.4
26gb|AY915751.1| Schistosoma japonicum SJCHGC09665 protein mRNA, p... 40 5.4
27gb|AC084196.1| Caenorhabditis elegans cosmid Y55D5A, complete se... 40 5.4
28gb|BC045402.1| Danio rerio novel nuclear protein 1, mRNA (cDNA c... 40 5.4
29ref|XM_647474.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.4
30ref|XM_647710.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.4
31ref|XM_647729.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.4
32ref|XM_946666.1| Theileria annulata strain Ankara hypothetical p... 40 5.4
33ref|XM_947612.1| Theileria annulata strain Ankara hypothetical p... 40 5.4
34ref|XM_660261.1| Cryptosporidium hominis TU502 HECT-domain (Chro... 40 5.4
35gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete s... 40 5.4
36emb|Z47816.1|SC9827 S.cerevisiae chromosome XIII cosmid 9827 40 5.4
37gb|U50184.1| Caenorhabditis elegans cosmid W03A3, complete sequence 40 5.4
38emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, ... 40 5.4
39emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BA... 40 5.4
40dbj|AK128828.1| Homo sapiens cDNA FLJ46308 fis, clone TESTI40395... 40 5.4
41gb|U94739.1| Acanthamoeba lenticulata strain Jc-1 18S small subu... 40 5.4
42gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map... 40 5.4
43gb|AC092846.5| Homo sapiens BAC clone RP11-617A17 from 4, comple... 40 5.4
44gb|AY734955.1| Rhagoletis pomonella clone 71 microsatellite sequ... 40 5.4
45gb|AC022893.6| Homo sapiens chromosome 8, clone RP11-531A24, com... 40 5.4
46gb|AF387009.1|AF387009 Arabidopsis thaliana Unknown protein (MCI... 40 5.4
47dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
48dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
49emb|BX817994.1|CNS0AED2 Arabidopsis thaliana Full-length cDNA Co... 40 5.4
50emb|BX815875.1|CNS0ADFL Arabidopsis thaliana Full-length cDNA Co... 40 5.4
51emb|BX818290.1|CNS0AAQG Arabidopsis thaliana Full-length cDNA Co... 40 5.4
52emb|BX830189.1|CNS0A1CC Arabidopsis thaliana Full-length cDNA Co... 40 5.4
53emb|BX829926.1|CNS0A1HG Arabidopsis thaliana Full-length cDNA Co... 40 5.4
54emb|BX832010.1|CNS0A11N Arabidopsis thaliana Full-length cDNA Co... 40 5.4
55dbj|AB073399.2| Tetragenococcus halophilus groESL operon (cpn10,... 40 5.4
56gb|AC021665.7|AC021665 Arabidopsis thaliana chromosome 1 BAC F17... 40 5.4
57gb|AC084543.1|CBRG28M02 Caenorhabditis briggsae cosmid G28M02, c... 40 5.4
58dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
59gb|BT004754.1| Arabidopsis thaliana At1g71950 gene, complete cds 40 5.4
60gb|AY087697.1| Arabidopsis thaliana clone 37751 mRNA, complete s... 40 5.4
61dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
62emb|BX510362.9| Mouse DNA sequence from clone RP23-371L4 on chro... 40 5.4
63dbj|AB016887.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.4
64dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.4
65dbj|AK068178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
66dbj|AK059290.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
67gb|AF132477.1|AF132477 Arabidopsis thaliana cultivar Col-0 heme ... 40 5.4
68gb|AC149351.2| Phakopsora pachyrhizi clone JGIAFNA-33E19, comple... 40 5.4
69gb|AC145797.2| Xenopus tropicalis clone CH216-22B13, complete se... 40 5.4
70gb|BT001154.1| Arabidopsis thaliana Unknown protein (At5g61450) ... 40 5.4
71gb|M77282.1|DROSIAB Drosophila virilis SEVEN IN ABSENTIA (seven ... 40 5.4 
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative
             Cf-2, fertilization-independent endosperm proteins,
             hypothetical protein, putative non-LTR retroelement
             reverse transcriptase, OCL5 protein, tryptophan synthase
             beta-subunit, hypothetical proteins, putative AP
             endonuclease, putative RNA polymerase II complex component
             SRB7, putative beta-1,3-glucanase, hypothetical protein,
             TNP2-like protein, hypothetical protein, putative
             phosphate/phosphoenolpyruvate translocator, putative
             protein, hypothetical proteins, putative
             galactosyltransferase family, hypothetical protein,
             putative cytochrome P450 family, putative lipid transfer
             protein, putative photoreceptor-interacting protein, and
             hypothetical protein genes, complete cds; and hypothetical
             protein gene, partial cds
          Length = 202197

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 342   tacgccttgacatacttgcccacatatgcctgt 374
             ||||||||| |||||||||| ||||||||||||
Sbjct: 86800 tacgccttggcatacttgccaacatatgcctgt 86832
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>gb|AC084550.1|CBRG33D04 Caenorhabditis briggsae cosmid G33D04, complete sequence
          Length = 39089

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 177   aaaagaagaagacgatgatgat 198
             ||||||||||||||||||||||
Sbjct: 22066 aaaagaagaagacgatgatgat 22087
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>ref|XM_479973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3689

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 347  cttgacatacttgcccacatatgcctgtacaagtttg 383
            |||| |||||||||| ||||||||||| || ||||||
Sbjct: 3198 cttggcatacttgccaacatatgcctggacgagtttg 3162
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>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence
          Length = 221860

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 177    aaaagaagaagacgatgatga 197
              |||||||||||||||||||||
Sbjct: 101524 aaaagaagaagacgatgatga 101504
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>ref|XM_806444.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506579.110) partial mRNA
          Length = 2934

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 177  aaaagaagaagacgatgatga 197
            |||||||||||||||||||||
Sbjct: 2142 aaaagaagaagacgatgatga 2122
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>ref|XM_804760.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053504881.10) partial mRNA
          Length = 1085

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 177 aaaagaagaagacgatgatga 197
           |||||||||||||||||||||
Sbjct: 293 aaaagaagaagacgatgatga 273
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>ref|XM_650061.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (35.t00001)
            partial mRNA
          Length = 1488

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 178  aaagaagaagacgatgatgat 198
            |||||||||||||||||||||
Sbjct: 1423 aaagaagaagacgatgatgat 1443
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>ref|XM_650395.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (28.t00015)
            partial mRNA
          Length = 1452

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 178  aaagaagaagacgatgatgat 198
            |||||||||||||||||||||
Sbjct: 1387 aaagaagaagacgatgatgat 1407
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>emb|AL035689.26|HS187J11 Human DNA sequence from clone RP1-187J11 on chromosome 6q11.1-22.33
             Contains the 3' part of the gene for endoplasmic reticulum
             associated protein 140 kDa (ERAP140) (similar to nucleolar
             protein C7B), the gene for a novel protein similar to
             protein kinase C inhibitors, the gene for MDS024 protein
             and two putative CpG islands, complete sequence
          Length = 144364

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 230   tgaaacagaacaaaaagaaac 250
             |||||||||||||||||||||
Sbjct: 81232 tgaaacagaacaaaaagaaac 81252
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>gb|AC032044.28| Homo sapiens chromosome 17, clone RP11-818O24, complete sequence
          Length = 199656

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 178    aaagaagaagacgatgatgat 198
              |||||||||||||||||||||
Sbjct: 155318 aaagaagaagacgatgatgat 155338
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>emb|BX901884.7| Zebrafish DNA sequence from clone DKEY-89E13 in linkage group 4,
             complete sequence
          Length = 137389

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 227   gcctgaaacagaacaaaaagaaacc 251
             |||||||||||| ||||||||||||
Sbjct: 65357 gcctgaaacagagcaaaaagaaacc 65333
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>dbj|AB108682.1| Streptomyces griseus sigF, sigL genes for sigma F, sigma L,
           comeplete cds
          Length = 2377

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 232 aaacagaacaaaaagaaaccc 252
           |||||||||||||||||||||
Sbjct: 106 aaacagaacaaaaagaaaccc 86
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>dbj|AK111729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038J07, full
            insert sequence
          Length = 2390

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 347  cttgacatacttgcccacatatgcctgtacaagtttg 383
            |||| |||||||||| ||||||||||| || ||||||
Sbjct: 2034 cttggcatacttgccaacatatgcctggacgagtttg 1998
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>dbj|AK100455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091E18, full
            insert sequence
          Length = 3689

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 347  cttgacatacttgcccacatatgcctgtacaagtttg 383
            |||| |||||||||| ||||||||||| || ||||||
Sbjct: 3198 cttggcatacttgccaacatatgcctggacgagtttg 3162
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>gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, complete sequence
          Length = 231380

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    aaaagaagaagacgatgatga 197
              |||||||||||||||||||||
Sbjct: 212558 aaaagaagaagacgatgatga 212578
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>ref|NM_001036951.1| Arabidopsis thaliana acetyl-CoA C-acetyltransferase AT5G47720
           transcript variant AT5G47720.5 mRNA, complete cds
          Length = 2167

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 ctgaaacagaacaaaaagaa 248
           ||||||||||||||||||||
Sbjct: 185 ctgaaacagaacaaaaagaa 166
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>ref|NM_128212.2| Arabidopsis thaliana HO2; heme oxygenase (decyclizing) AT2G26550
           (HO2) mRNA, complete cds
          Length = 1065

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 332 aagaagaagacgatgatgat 351
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>ref|NM_105853.3| Arabidopsis thaliana unknown protein AT1G71950 mRNA, complete cds
          Length = 720

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 99  aagaagaagacgatgatgat 80
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>ref|NM_125538.2| Arabidopsis thaliana unknown protein AT5G61450 mRNA, complete cds
          Length = 1614

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 100 aagaagaagacgatgatgat 81
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>gb|AC024776.1| Caenorhabditis elegans cosmid Y41D4B, complete sequence
          Length = 138020

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    tacttgcccacatatgcctg 373
              ||||||||||||||||||||
Sbjct: 132579 tacttgcccacatatgcctg 132560
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>ref|XM_714735.1| Candida albicans SC5314 hypothetical protein (CaO19_6729), mRNA
          Length = 3726

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 995  aagaagaagacgatgatgat 1014
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>ref|XM_714618.1| Candida albicans SC5314 hypothetical protein (CaO19_14021), mRNA
          Length = 3726

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 995  aagaagaagacgatgatgat 1014
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>ref|XM_705894.1| Candida albicans SC5314 myosin type 1 (CaO19.738), mRNA
          Length = 3951

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 3926 aagaagaagacgatgatgat 3945
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>ref|XM_705881.1| Candida albicans SC5314 myosin type 1 (CaO19.8357), mRNA
          Length = 3969

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 3944 aagaagaagacgatgatgat 3963
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>gb|AY812265.1| Schistosoma japonicum SJCHGC08306 protein mRNA, partial cds
          Length = 578

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 88  aagaagaagacgatgatgat 69
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>gb|AY915751.1| Schistosoma japonicum SJCHGC09665 protein mRNA, partial cds
          Length = 683

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 211 aagaagaagacgatgatgat 192
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>gb|AC084196.1| Caenorhabditis elegans cosmid Y55D5A, complete sequence
          Length = 86523

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   agaagaagacgatgatgata 199
             ||||||||||||||||||||
Sbjct: 61610 agaagaagacgatgatgata 61591
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>gb|BC045402.1| Danio rerio novel nuclear protein 1, mRNA (cDNA clone IMAGE:2644274),
            partial cds
          Length = 2358

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 1612 aagaagaagacgatgatgat 1631
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>ref|XM_647474.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (114.t00013)
            partial mRNA
          Length = 1452

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 1415 aagaagaagacgatgatgat 1434
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>ref|XM_647710.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (104.t00009)
           partial mRNA
          Length = 312

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 185 aagaagaagacgatgatgat 204
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>ref|XM_647729.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (104.t00004)
           partial mRNA
          Length = 825

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 368 aagaagaagacgatgatgat 387
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>ref|XM_946666.1| Theileria annulata strain Ankara hypothetical protein (TA16050)
            partial mRNA
          Length = 15786

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  agaagaagacgatgatgata 199
            ||||||||||||||||||||
Sbjct: 3606 agaagaagacgatgatgata 3625
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>ref|XM_947612.1| Theileria annulata strain Ankara hypothetical protein (TA17115)
            partial mRNA
          Length = 14658

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  agaagaagacgatgatgata 199
            ||||||||||||||||||||
Sbjct: 3612 agaagaagacgatgatgata 3631
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>ref|XM_660261.1| Cryptosporidium hominis TU502 HECT-domain (Chro.70558) partial mRNA
          Length = 1506

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 379 aagaagaagacgatgatgat 360
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>gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete sequence
          Length = 144248

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 174   tacaaaagaagaagacgatgatgataca 201
             |||| |||||||||| ||||||||||||
Sbjct: 49621 tacacaagaagaagaagatgatgataca 49648
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>emb|Z47816.1|SC9827 S.cerevisiae chromosome XIII cosmid 9827
          Length = 20668

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 3980 aagaagaagacgatgatgat 3961
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>gb|U50184.1| Caenorhabditis elegans cosmid W03A3, complete sequence
          Length = 14968

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 8314 aagaagaagacgatgatgat 8295
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>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
          Length = 196107

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    aagaagaagacgatgatgat 198
              ||||||||||||||||||||
Sbjct: 134435 aagaagaagacgatgatgat 134454
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>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
          Length = 137519

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    aagaagaagacgatgatgat 198
              ||||||||||||||||||||
Sbjct: 129903 aagaagaagacgatgatgat 129922
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>dbj|AK128828.1| Homo sapiens cDNA FLJ46308 fis, clone TESTI4039575, weakly  similar
            to Telomeric repeat binding factor 1
          Length = 3558

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  ctgaaacagaacaaaaagaa 248
            ||||||||||||||||||||
Sbjct: 1794 ctgaaacagaacaaaaagaa 1813
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>gb|U94739.1| Acanthamoeba lenticulata strain Jc-1 18S small subunit ribosomal RNA
            gene, partial sequence
          Length = 2992

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 175  acaaaagaagaagacgatgatgat 198
            |||||||||||||| |||||||||
Sbjct: 2135 acaaaagaagaagatgatgatgat 2158
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>gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map B68, complete
             sequence
          Length = 115851

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   aagaagaagacgatgatgat 198
             ||||||||||||||||||||
Sbjct: 78760 aagaagaagacgatgatgat 78741
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>gb|AC092846.5| Homo sapiens BAC clone RP11-617A17 from 4, complete sequence
          Length = 197540

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   tgttgtacaaaagaagaaga 188
             ||||||||||||||||||||
Sbjct: 54225 tgttgtacaaaagaagaaga 54244
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>gb|AY734955.1| Rhagoletis pomonella clone 71 microsatellite sequence
          Length = 397

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 aaaagaagaagacgatgatg 196
           ||||||||||||||||||||
Sbjct: 302 aaaagaagaagacgatgatg 321
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>gb|AC022893.6| Homo sapiens chromosome 8, clone RP11-531A24, complete sequence
          Length = 175229

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   ctgaaacagaacaaaaagaa 248
             ||||||||||||||||||||
Sbjct: 69824 ctgaaacagaacaaaaagaa 69805
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>gb|AF387009.1|AF387009 Arabidopsis thaliana Unknown protein (MCI2.1) mRNA, complete cds
          Length = 1615

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 100 aagaagaagacgatgatgat 81
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 376      caagtttgctgagtttttct 395
                ||||||||||||||||||||
Sbjct: 15160759 caagtttgctgagtttttct 15160778
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 179      aagaagaagacgatgatgat 198
                ||||||||||||||||||||
Sbjct: 39607499 aagaagaagacgatgatgat 39607518
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>emb|BX817994.1|CNS0AED2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL55ZE07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 505

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 26  aagaagaagacgatgatgat 7
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>emb|BX815875.1|CNS0ADFL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH14ZD06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1172

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 23  aagaagaagacgatgatgat 4
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>emb|BX818290.1|CNS0AAQG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL71ZA11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 642

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 21  aagaagaagacgatgatgat 2
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>emb|BX830189.1|CNS0A1CC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB65ZB04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1545

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 75  aagaagaagacgatgatgat 56
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>emb|BX829926.1|CNS0A1HG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZF02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1496

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 32  aagaagaagacgatgatgat 13
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>emb|BX832010.1|CNS0A11N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH45ZH06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1527

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 58  aagaagaagacgatgatgat 39
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>dbj|AB073399.2| Tetragenococcus halophilus groESL operon (cpn10, cpn60 genes),
            complete sequence
          Length = 2836

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  ctgaaacagaacaaaaagaa 248
            ||||||||||||||||||||
Sbjct: 1893 ctgaaacagaacaaaaagaa 1912
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>gb|AC021665.7|AC021665 Arabidopsis thaliana chromosome 1 BAC F17M19 genomic sequence, complete
             sequence
          Length = 80413

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   aagaagaagacgatgatgat 198
             ||||||||||||||||||||
Sbjct: 53853 aagaagaagacgatgatgat 53872
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>gb|AC084543.1|CBRG28M02 Caenorhabditis briggsae cosmid G28M02, complete sequence
          Length = 44796

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   acaaaagaagaagacgatga 194
             ||||||||||||||||||||
Sbjct: 18962 acaaaagaagaagacgatga 18981
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>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0456E05
          Length = 173699

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   aagaagaagacgatgatgat 198
             ||||||||||||||||||||
Sbjct: 88455 aagaagaagacgatgatgat 88474
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>gb|BT004754.1| Arabidopsis thaliana At1g71950 gene, complete cds
          Length = 411

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 59  aagaagaagacgatgatgat 40
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>gb|AY087697.1| Arabidopsis thaliana clone 37751 mRNA, complete sequence
          Length = 585

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 99  aagaagaagacgatgatgat 80
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>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1740_D06
          Length = 187410

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   caagtttgctgagtttttct 395
             ||||||||||||||||||||
Sbjct: 54735 caagtttgctgagtttttct 54754
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>emb|BX510362.9| Mouse DNA sequence from clone RP23-371L4 on chromosome 2, complete
             sequence
          Length = 98800

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    aagtcaagttctagcacatg 54
             ||||||||||||||||||||
Sbjct: 95914 aagtcaagttctagcacatg 95895
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>dbj|AB016887.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCI2
          Length = 15607

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 3028 aagaagaagacgatgatgat 3047
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>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23
          Length = 82503

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  ctgaaacagaacaaaaagaa 248
            ||||||||||||||||||||
Sbjct: 9074 ctgaaacagaacaaaaagaa 9055
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>dbj|AK068178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130C02, full
           insert sequence
          Length = 1312

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 100 aagaagaagacgatgatgat 81
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>dbj|AK059290.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E02, full
           insert sequence
          Length = 1181

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 376 caagtttgctgagtttttct 395
           ||||||||||||||||||||
Sbjct: 58  caagtttgctgagtttttct 39
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>gb|AF132477.1|AF132477 Arabidopsis thaliana cultivar Col-0 heme oxygenase 2 (HO2) gene,
           nuclear gene encoding chloroplast protein, complete cds
          Length = 4672

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 821 aagaagaagacgatgatgat 840
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>gb|AC149351.2| Phakopsora pachyrhizi clone JGIAFNA-33E19, complete sequence
          Length = 35432

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   aagaagaagacgatgatgat 198
             ||||||||||||||||||||
Sbjct: 19293 aagaagaagacgatgatgat 19312
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>gb|AC145797.2| Xenopus tropicalis clone CH216-22B13, complete sequence
          Length = 142988

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 236  agaacaaaaagaaacccttgccac 259
            |||||| |||||||||||||||||
Sbjct: 9604 agaacacaaagaaacccttgccac 9627
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>gb|BT001154.1| Arabidopsis thaliana Unknown protein (At5g61450) mRNA, complete cds
          Length = 1490

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 aagaagaagacgatgatgat 198
           ||||||||||||||||||||
Sbjct: 37  aagaagaagacgatgatgat 18
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>gb|M77282.1|DROSIAB Drosophila virilis SEVEN IN ABSENTIA (seven in absentia) gene,
            complete cds
          Length = 1762

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagaagaagacgatgatgat 198
            ||||||||||||||||||||
Sbjct: 1460 aagaagaagacgatgatgat 1479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,068,390
Number of Sequences: 3902068
Number of extensions: 4068390
Number of successful extensions: 89709
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89561
Number of HSP's gapped (non-prelim): 148
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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