ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATPA_BUCAI (P57122) ATP synthase alpha chain (EC 3.6.3.14) (ATP ... 30 1.1
2KPK1_PHAVU (P15792) Protein kinase PVPK-1 (EC 2.7.11.1) 30 1.4
3SCRN1_HUMAN (Q12765) Secernin-1 30 1.8
4SCRN1_MOUSE (Q9CZC8) Secernin-1 29 2.3
5G11A_ORYSA (P47997) Protein kinase G11A (EC 2.7.11.1) 29 3.1
6KPK7_ARATH (Q05999) Putative serine/threonine-protein kinase PK7... 29 3.1
7CX32_MICUN (P51915) Gap junction Cx32.2 protein (Connexin-32.2) 28 5.2
8ABCG2_RAT (Q80W57) ATP-binding cassette sub-family G member 2 (B... 28 5.2
9ABCG2_MOUSE (Q7TMS5) ATP-binding cassette sub-family G member 2 ... 28 5.2
10TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanis... 28 6.8
11ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disint... 28 6.8
12SYG_BOMMO (Q04451) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... 27 8.9
13ABCG2_PIG (Q8MIB3) ATP-binding cassette sub-family G member 2 (B... 27 8.9
14CDKL2_MACFA (Q4R7T5) Cyclin-dependent kinase-like 2 (EC 2.7.11.22) 27 8.9

>ATPA_BUCAI (P57122) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1|
           sector alpha subunit)
          Length = 512

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 12  YLMVLTRNKVTGTTPDLTQLLYIPTLAGD 98
           Y+  +T+NK+TG T  +T L  I T +GD
Sbjct: 308 YVQKITKNKITGKTGSITALPIIETQSGD 336



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>KPK1_PHAVU (P15792) Protein kinase PVPK-1 (EC 2.7.11.1)|
          Length = 609

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 402 NWALIRWTAPPETPKSIV 349
           NWALIR   PPE P+ ++
Sbjct: 569 NWALIRCATPPEVPRQVI 586



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>SCRN1_HUMAN (Q12765) Secernin-1|
          Length = 414

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 37  KLQAQHPTLLSYSTSQHWQVTTDNSSSTEKLQGGGDRGNCGTTTSS 174
           K+ A+HP L SY+ SQ W       + +E      D  +CG    S
Sbjct: 196 KMDAEHPELRSYAQSQGWWTGEGEFNFSEVFSPVEDHLDCGAGKDS 241



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>SCRN1_MOUSE (Q9CZC8) Secernin-1|
          Length = 414

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 37  KLQAQHPTLLSYSTSQHWQVTTDNSSSTEKLQGGGDRGNC 156
           KL  +HP L +Y+ SQ W    D  +  +      DR +C
Sbjct: 196 KLDEEHPELRTYAQSQGWWTGDDEFNFAQVFSPADDRLDC 235



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>G11A_ORYSA (P47997) Protein kinase G11A (EC 2.7.11.1)|
          Length = 589

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 402 NWALIRWTAPPETPKSI 352
           NWALIR  +PPE P+ +
Sbjct: 537 NWALIRCASPPEVPRPV 553



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>KPK7_ARATH (Q05999) Putative serine/threonine-protein kinase PK7 (EC 2.7.11.1)|
          Length = 578

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 402 NWALIRWTAPPETPKSI 352
           NWALIR T+PP+ P+ +
Sbjct: 520 NWALIRCTSPPQIPQPV 536



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>CX32_MICUN (P51915) Gap junction Cx32.2 protein (Connexin-32.2)|
          Length = 284

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 167 VVVPQFPLSPPPCSFSVEDELS 102
           ++VP FP S  PC F+VE  +S
Sbjct: 165 IMVPMFPCSKKPCPFTVECYMS 186



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>ABCG2_RAT (Q80W57) ATP-binding cassette sub-family G member 2 (Breast cancer|
           resistance protein 1 homolog)
          Length = 657

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 108 LIFNRKTAGGWGQGELWDYYF*LPRYGYSSEQ 203
           L+ N +T G W     W  YF +PRYG+++ Q
Sbjct: 554 LLVNLRTIGPWLS---WLQYFSIPRYGFTALQ 582



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>ABCG2_MOUSE (Q7TMS5) ATP-binding cassette sub-family G member 2 (Breast cancer|
           resistance protein 1 homolog)
          Length = 657

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 108 LIFNRKTAGGWGQGELWDYYF*LPRYGYSSEQ 203
           L+ N +T G W     W  YF +PRYG+++ Q
Sbjct: 554 LLVNLRTIGPWLS---WLQYFSIPRYGFTALQ 582



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>TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanism protein)|
          Length = 964

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 34  IKLQAQHPTLLSYSTSQHWQVTTDNSSSTEKLQ 132
           ++ Q + PT    S  QHW +T   ++ T  +Q
Sbjct: 399 LRFQVRSPTFFQKSRDQHWYITQLEAAQTSYIQ 431



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>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 20) (ADAM-TS
            20) (ADAM-TS20)
          Length = 1906

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 379  CTAGDPEKHRRSLNPYGSRGTEEEGRQVPRV 287
            C  GD  +    +N +G R  E E R++PRV
Sbjct: 978  CGGGDKTRESYCVNGFGHRLAESECRELPRV 1008



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>SYG_BOMMO (Q04451) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 680

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 113 DELSVVTCQCWDVE*LSKVGCCAC 42
           +E++   C CWD E LS  G   C
Sbjct: 379 NEMAHYACDCWDAECLSSYGWIEC 402



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>ABCG2_PIG (Q8MIB3) ATP-binding cassette sub-family G member 2 (Brain|
           multidrug resistance protein)
          Length = 656

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 108 LIFNRKTAGGWGQGELWDYYF*LPRYGYSSEQ 203
           L+ N KT   W     W  YF +PRYG+S+ Q
Sbjct: 555 LLVNLKTVVPWLS---WLQYFSIPRYGFSALQ 583



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>CDKL2_MACFA (Q4R7T5) Cyclin-dependent kinase-like 2 (EC 2.7.11.22)|
          Length = 570

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 251 KSSNSMSSPFIRNSRHLPSFFFRATATVRVEASTMLFGVS 370
           + +   S PF++ +RH PS  +    T  V +   LF  S
Sbjct: 444 EKTKKCSIPFVKPNRHSPSGIYNINVTTLVSSEKSLFRAS 483


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,761,997
Number of Sequences: 219361
Number of extensions: 730504
Number of successful extensions: 2131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2130
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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