>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                            
Query: 294      gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 337
                ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 10942911 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 10942954

>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
             from chromosome 3, complete sequence
          Length = 127348

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 294   gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 337
             ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 38118 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 38075

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                            
Query: 294      gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 337
                ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 10941012 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 10941055

>dbj|AK072741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136H15, full
            insert sequence
          Length = 3559

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 294  gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 337
            ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 3254 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 3211



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                        
Query: 370  tctcaaaaccacaagaatttaccttgggaaggatgaaatggtcggcagcaggaaggcttg 429
            |||| ||||| || |||||||| || |||| ||||||||| |  ||||  ||||||||||
Sbjct: 3175 tctcgaaaccgcatgaatttactttaggaatgatgaaatgctgcgcagatggaaggcttg 3116

                            
Query: 430  gcacagggttgtctgg 445
            |  |||| ||||||||
Sbjct: 3115 gagcaggattgtctgg 3100

>dbj|AK062228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D02, full
            insert sequence
          Length = 1433

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 294  gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 337
            ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1072 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 1029



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                       
Query: 370 tctcaaaaccacaagaatttaccttgggaaggatgaaatggtcggcagcaggaaggcttg 429
           |||| ||||| || |||||||| || |||| ||||||||| |  ||||  ||||||||||
Sbjct: 993 tctcgaaaccgcatgaatttactttaggaatgatgaaatgctgcgcagatggaaggcttg 934

                           
Query: 430 gcacagggttgtctgg 445
           |  |||| ||||||||
Sbjct: 933 gagcaggattgtctgg 918

>gb|AC112908.3| Homo sapiens 3 BAC RP11-657F23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 111304

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 89   agtacataatactagtagatac 110
            ||||||||||||||||||||||
Sbjct: 5447 agtacataatactagtagatac 5426

>gb|AE017136.1| Yersinia pestis biovar Medievalis str. 91001 section 10 of 16 of the
              complete genome
          Length = 290294

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 421    gaaggcttggcacagggttgtctg 444
              ||||||||||||||||||| ||||
Sbjct: 105054 gaaggcttggcacagggttatctg 105031

>gb|AC007866.11| Trypanosoma brucei chromosome 2 clone RPCI93-36E18, complete sequence
          Length = 110159

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    acatacgctacaacaactga 140
              ||||||||||||||||||||
Sbjct: 102889 acatacgctacaacaactga 102870

>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     acatacgctacaacaactga 140
               ||||||||||||||||||||
Sbjct: 1186678 acatacgctacaacaactga 1186659

>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     atggttagctcagctgtgat 250
               ||||||||||||||||||||
Sbjct: 2355533 atggttagctcagctgtgat 2355514

>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 421     gaaggcttggcacagggttgtctg 444
               ||||||||||||||||||| ||||
Sbjct: 1368749 gaaggcttggcacagggttatctg 1368726

>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence
          Length = 231896

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     gagtacataatactagtaga 107
              ||||||||||||||||||||
Sbjct: 129280 gagtacataatactagtaga 129261

>ref|XM_946664.1| Trypanosoma brucei TREU927 variant surface glycoprotein
           (Tb927.2.6410) partial mRNA
          Length = 1431

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 acatacgctacaacaactga 140
           ||||||||||||||||||||
Sbjct: 811 acatacgctacaacaactga 830

>emb|AL121990.34|HSDJ613A2 Human DNA sequence from clone RP4-613A2 on chromosome 1q42.11-42.3
             Contains the 5' end of the NUP133 gene, a novel gene, the
             ABCB10 gene for ATP-binding cassette, sub-family B
             (MDR/TAP), member 10, a high-mobility group nucleosomal
             binding domain 2 (HMGN2) pseudogene, the TAF5L gene for
             TAF5-like RNA polymerase II, p300/CBP-associated factor
             (PCAF)-associated factor, 65kDa, the 5' end of a novel
             gene (KIAA0133) and three CpG islands, complete sequence
          Length = 147913

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   gttcagtgatagatactaca 212
             ||||||||||||||||||||
Sbjct: 47219 gttcagtgatagatactaca 47200

>emb|CR848728.7| Zebrafish DNA sequence from clone CH211-251H16 in linkage group 2,
              complete sequence
          Length = 169884

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     gcgatcacacacacgctgcagccg 76
              |||||||||||||| |||||||||
Sbjct: 121867 gcgatcacacacacactgcagccg 121844

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     gccagccaggcggccaagtc 176
               ||||||||||||||||||||
Sbjct: 1627979 gccagccaggcggccaagtc 1627960

>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 421     gaaggcttggcacagggttgtctg 444
               ||||||||||||||||||| ||||
Sbjct: 3494173 gaaggcttggcacagggttatctg 3494196

>emb|AJ414153.1| Yersinia pestis strain CO92 complete genome; segment 13/20
          Length = 258050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 421   gaaggcttggcacagggttgtctg 444
             ||||||||||||||||||| ||||
Sbjct: 59460 gaaggcttggcacagggttatctg 59437

>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
             complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    gtacataatactagtagata 109
             ||||||||||||||||||||
Sbjct: 29208 gtacataatactagtagata 29189

>ref|XM_692301.1| PREDICTED: Danio rerio similar to Otoconin 90 precursor (Oc90)
            (Phospholipase A2 homolog) (LOC568941), mRNA
          Length = 2423

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   gcgatcacacacacgctgcagccg 76
            |||||||||||||| |||||||||
Sbjct: 1773 gcgatcacacacacactgcagccg 1750

>emb|BX005444.14| Zebrafish DNA sequence from clone CH211-119H23 in linkage group 2,
              complete sequence
          Length = 168979

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     gcgatcacacacacgctgcagccg 76
              |||||||||||||| |||||||||
Sbjct: 164890 gcgatcacacacacactgcagccg 164867

>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 385     aatttaccttgggaaggatg 404
               ||||||||||||||||||||
Sbjct: 1331079 aatttaccttgggaaggatg 1331060

>emb|AL845480.12| Mouse DNA sequence from clone RP23-361N10 on chromosome 2, complete
             sequence
          Length = 147686

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   gcaggaaggcttggcacagg 436
             ||||||||||||||||||||
Sbjct: 99578 gcaggaaggcttggcacagg 99559


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,232,522
Number of Sequences: 3902068
Number of extensions: 3232522
Number of successful extensions: 53925
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53774
Number of HSP's gapped (non-prelim): 151
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)