ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
3dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
4dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
5ref|NM_101539.1| Arabidopsis thaliana AVPL1 (VACUOLAR-PYROPHOSPH... 72 2e-09
6emb|BX817279.1|CNS0AB7C Arabidopsis thaliana Full-length cDNA Co... 68 3e-08
7ref|NM_106541.2| Arabidopsis thaliana AVP2 AT1G78920 (AVP2) mRNA... 60 7e-06
8gb|BT010353.1| Arabidopsis thaliana At1g78920 mRNA, complete cds 60 7e-06
9dbj|AK220927.1| Arabidopsis thaliana mRNA for vacuolar-pyrophosp... 60 7e-06
10gb|AY054485.1| Arabidopsis thaliana Similar to vacuolar H+-pyrop... 60 7e-06
11emb|BX815888.1|CNS0ABNT Arabidopsis thaliana Full-length cDNA Co... 60 7e-06
12emb|BX816636.1|CNS0AAKC Arabidopsis thaliana Full-length cDNA Co... 60 7e-06
13gb|AF182813.1|AF182813 Arabidopsis thaliana vacuolar-type H+-tra... 60 7e-06
14dbj|AB034696.1| Arabidopsis thaliana AVPL1 mRNA for vacuolar-pyr... 60 7e-06
15gb|AE011990.1| Xanthomonas axonopodis pv. citri str. 306, secti... 52 0.002
16gb|AF184917.1|AF184917 Arabidopsis thaliana vacuolar-type H+-tra... 46 0.10
17gb|AC005679.1|F9K20 Arabidopsis thaliana chromosome 1 BAC F9K20 ... 46 0.10
18gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17... 44 0.40
19dbj|D86306.1| Cucurbita moschata mRNA for proton-translocating i... 44 0.40
20dbj|D88820.1| Acetabularia mediterranea mRNA for inorganic pyrop... 44 0.40
21ref|NM_104063.1| Arabidopsis thaliana ATP binding / kinase/ prot... 42 1.6
22ref|NM_175391.2| Mus musculus RIKEN cDNA 2210421G13 gene (221042... 42 1.6
23emb|AL355986.7| Human DNA sequence from clone RP11-516G5 on chro... 42 1.6
24gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.6
25emb|BX571676.5| Zebrafish DNA sequence from clone DKEY-242N5 in ... 42 1.6
26dbj|AK221400.1| Arabidopsis thaliana mRNA for Putative protein k... 42 1.6
27gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F1... 42 1.6
28dbj|AK075855.1| Mus musculus adult male stomach cDNA, RIKEN full... 42 1.6
29gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BAC T14... 42 1.6
30dbj|AB006705.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.6
31emb|AL592187.17| Mouse DNA sequence from clone RP23-188D8 on chr... 42 1.6
32emb|AL591864.14| Mouse DNA sequence from clone RP23-21H3 on chro... 42 1.6
33ref|NM_104062.2| Arabidopsis thaliana kinase AT1G51820 mRNA, com... 40 6.3
34gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 40 6.3
35gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, c... 40 6.3
36gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, co... 40 6.3
37gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Canc... 40 6.3
38gb|AC132608.2| Mus musculus BAC clone RP23-451E12 from chromosom... 40 6.3
39emb|AL118511.25|HSDJ858B6 Human DNA sequence from clone RP5-858B... 40 6.3
40emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 ... 40 6.3
41dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 6.3
42gb|AC016657.5| Homo sapiens chromosome 5 clone RP1-6C3, complete... 40 6.3
43gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Canc... 40 6.3
44gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 ... 40 6.3
45gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C... 40 6.3
46gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B... 40 6.3
47gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complet... 40 6.3
48gb|AC069276.4| Homo sapiens chromosome 3 clone RP11-470E10 map 3... 40 6.3
49gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p... 40 6.3 
>dbj|AK070310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047F16, full
            insert sequence
          Length = 3048

 Score =  214 bits (108), Expect = 2e-52
 Identities = 150/164 (91%)
 Strand = Plus / Minus

                                                                        
Query: 303  ggagccatgaccagtgtgatcgtggcgagcatcttgatgagaacatggatcgaaggcccc 362
            |||||||| || | |||||| || ||||||||||| || ||||||||||| |||||||||
Sbjct: 2881 ggagccatcactaatgtgattgtagcgagcatcttaataagaacatggatggaaggcccc 2822

                                                                        
Query: 363  gccgtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctca 422
            ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 2821 gccgtgtctttaaatggatctccaaccgtatcaccagtaactgcagccttgtgagactca 2762

                                                        
Query: 423  ctgcctttaccaccaagtgcaccagtctcgatgtacttcttagc 466
            |||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 2761 ctgcctttgccaccaagagcgccagtctcgatgtacttcttagc 2718
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  115 bits (58), Expect = 1e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                            
Query: 389      cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaagtgcaccagt 448
                |||||||||||||| |||||||||||||| |||||||||||| |||||||| || |||||
Sbjct: 19932561 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaagagcgccagt 19932620

                                  
Query: 449      ctcgatgtacttcttagc 466
                ||||||||||||||||||
Sbjct: 19932621 ctcgatgtacttcttagc 19932638



 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                            
Query: 303      ggagccatgaccagtgtgatcgtggcgagcatcttgatgagaacatggatcgaaggcccc 362
                |||||||| || | |||||| || ||||||||||| || ||||||||||| |||||||||
Sbjct: 19932104 ggagccatcactaatgtgattgtagcgagcatcttaataagaacatggatggaaggcccc 19932163

                                           
Query: 363      gccgtgtctttgaatggatctccaacc 389
                ||||||||||| |||||||||||||||
Sbjct: 19932164 gccgtgtctttaaatggatctccaacc 19932190
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>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0508B05
          Length = 166165

 Score =  115 bits (58), Expect = 1e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                          
Query: 389    cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaagtgcaccagt 448
              |||||||||||||| |||||||||||||| |||||||||||| |||||||| || |||||
Sbjct: 110162 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaagagcgccagt 110221

                                
Query: 449    ctcgatgtacttcttagc 466
              ||||||||||||||||||
Sbjct: 110222 ctcgatgtacttcttagc 110239



 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                          
Query: 303    ggagccatgaccagtgtgatcgtggcgagcatcttgatgagaacatggatcgaaggcccc 362
              |||||||| || | |||||| || ||||||||||| || ||||||||||| |||||||||
Sbjct: 109705 ggagccatcactaatgtgattgtagcgagcatcttaataagaacatggatggaaggcccc 109764

                                         
Query: 363    gccgtgtctttgaatggatctccaacc 389
              ||||||||||| |||||||||||||||
Sbjct: 109765 gccgtgtctttaaatggatctccaacc 109791
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>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0014M17
          Length = 156778

 Score =  115 bits (58), Expect = 1e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                         
Query: 389   cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaagtgcaccagt 448
             |||||||||||||| |||||||||||||| |||||||||||| |||||||| || |||||
Sbjct: 36682 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaagagcgccagt 36741

                               
Query: 449   ctcgatgtacttcttagc 466
             ||||||||||||||||||
Sbjct: 36742 ctcgatgtacttcttagc 36759



 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                         
Query: 303   ggagccatgaccagtgtgatcgtggcgagcatcttgatgagaacatggatcgaaggcccc 362
             |||||||| || | |||||| || ||||||||||| || ||||||||||| |||||||||
Sbjct: 36225 ggagccatcactaatgtgattgtagcgagcatcttaataagaacatggatggaaggcccc 36284

                                        
Query: 363   gccgtgtctttgaatggatctccaacc 389
             ||||||||||| |||||||||||||||
Sbjct: 36285 gccgtgtctttaaatggatctccaacc 36311
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>ref|NM_101539.1| Arabidopsis thaliana AVPL1 (VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1)
            AT1G16780 (AVPL1) mRNA, complete cds
          Length = 2578

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 135/168 (80%)
 Strand = Plus / Minus

                                                                        
Query: 296  aaagatcggagccatgaccagtgtgatcgtggcgagcatcttgatgagaacatggatcga 355
            |||||| ||||||||||| || ||||| || || | ||| ||||||||||| || |||||
Sbjct: 2403 aaagataggagccatgacaagcgtgatagtcgccaacattttgatgagaacgtgaatcga 2344

                                                                        
Query: 356  aggccccgccgtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtg 415
             || || || ||||| ||||| || ||||| || ||||||||||| | |||||| |||||
Sbjct: 2343 cggtcctgctgtgtccttgaaagggtctcccacagtatcaccagttactgcagctttgtg 2284

                                                            
Query: 416  agcctcactgcctttaccaccaagtgcaccagtctcgatgtacttctt 463
             |  ||||| ||||| || || || || |||||||| ||||| |||||
Sbjct: 2283 ggaatcacttcctttgcctcctagagctccagtctcaatgtatttctt 2236
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>emb|BX817279.1|CNS0AB7C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL10ZC09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 508

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 366 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
           ||||| ||||| |||||||| || |||||||||||||  || || |||||||| ||||| 
Sbjct: 237 gtgtccttgaacggatctcccacggtatcaccagtaacagctgctttgtgagcttcactt 178

                                                 
Query: 426 cctttaccaccaagtgcaccagtctcgatgtacttctt 463
           ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 177 cctttgcccccaagtgccccggtctctatgtatttctt 140
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>ref|NM_106541.2| Arabidopsis thaliana AVP2 AT1G78920 (AVP2) mRNA, complete cds
          Length = 3082

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2786 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2727

                                                  
Query: 426  cctttaccaccaagtgcaccagtctcgatgtacttctt 463
            ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 2726 cctttgcccccaagtgccccggtctctatgtatttctt 2689
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>gb|BT010353.1| Arabidopsis thaliana At1g78920 mRNA, complete cds
          Length = 2409

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2333 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2274

                                                  
Query: 426  cctttaccaccaagtgcaccagtctcgatgtacttctt 463
            ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 2273 cctttgcccccaagtgccccggtctctatgtatttctt 2236
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>dbj|AK220927.1| Arabidopsis thaliana mRNA for vacuolar-pyrophosphatase like
           protein, complete cds, clone: RAFL22-50-C13
          Length = 1137

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                       
Query: 366 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
           ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 832 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 773

                                                 
Query: 426 cctttaccaccaagtgcaccagtctcgatgtacttctt 463
           ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 772 cctttgcccccaagtgccccggtctctatgtatttctt 735
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>gb|AY054485.1| Arabidopsis thaliana Similar to vacuolar H+-pyrophosphatase
            (At1g78920; F9K20.2) mRNA, complete cds
          Length = 3080

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2784 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2725

                                                  
Query: 426  cctttaccaccaagtgcaccagtctcgatgtacttctt 463
            ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 2724 cctttgcccccaagtgccccggtctctatgtatttctt 2687
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>emb|BX815888.1|CNS0ABNT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH15ZB05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 567

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                       
Query: 366 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
           ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 282 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 223

                                                 
Query: 426 cctttaccaccaagtgcaccagtctcgatgtacttctt 463
           ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 222 cctttgcccccaagtgccccggtctctatgtatttctt 185
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>emb|BX816636.1|CNS0AAKC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH5ZE09 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 3011

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2759 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2700

                                                  
Query: 426  cctttaccaccaagtgcaccagtctcgatgtacttctt 463
            ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 2699 cctttgcccccaagtgccccggtctctatgtatttctt 2662
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>gb|AF182813.1|AF182813 Arabidopsis thaliana vacuolar-type H+-translocating inorganic
            pyrophosphatase (AVP2) mRNA, complete cds
          Length = 2403

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2327 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2268

                                                  
Query: 426  cctttaccaccaagtgcaccagtctcgatgtacttctt 463
            ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 2267 cctttgcccccaagtgccccggtctctatgtatttctt 2230
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>dbj|AB034696.1| Arabidopsis thaliana AVPL1 mRNA for vacuolar-pyrophosphatase like
            protein, complete cds
          Length = 2991

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 425
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2704 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2645

                                                  
Query: 426  cctttaccaccaagtgcaccagtctcgatgtacttctt 463
            ||||| || |||||||| || ||||| ||||| |||||
Sbjct: 2644 cctttgcccccaagtgccccggtctctatgtatttctt 2607
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>gb|AE011990.1| Xanthomonas axonopodis pv. citri str. 306,  section 368 of 469 of the
            complete genome
          Length = 12292

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 357  ggccccgccgtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtga 416
            |||||||| ||||||||| |||| || || || || || || ||||| ||||||||||| 
Sbjct: 5182 ggccccgcggtgtctttgtatgggtcaccgactgtgtcgccggtaatcgcagccttgtgc 5123

                          
Query: 417  gcctcactgccttt 430
            ||||| ||||||||
Sbjct: 5122 gcctcgctgccttt 5109
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>gb|AF184917.1|AF184917 Arabidopsis thaliana vacuolar-type H+-translocating inorganic
            pyrophosphatase (AVP2) gene, complete cds
          Length = 7500

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                        
Query: 389  cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaagtgcaccagt 448
            |||||||||||| |  || || |||||||| ||||| ||||| || |||||||| || ||
Sbjct: 1313 cgtatcaccagtcacagctgctttgtgagcttcacttcctttgcccccaagtgccccggt 1372

                           
Query: 449  ctcgatgtacttctt 463
            ||| ||||| |||||
Sbjct: 1373 ctctatgtatttctt 1387
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>gb|AC005679.1|F9K20 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete
            sequence
          Length = 90425

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                        
Query: 389  cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaagtgcaccagt 448
            |||||||||||| |  || || |||||||| ||||| ||||| || |||||||| || ||
Sbjct: 1313 cgtatcaccagtcacagctgctttgtgagcttcacttcctttgcccccaagtgccccggt 1372

                           
Query: 449  ctcgatgtacttctt 463
            ||| ||||| |||||
Sbjct: 1373 ctctatgtatttctt 1387
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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete
             sequence
          Length = 90498

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 73/90 (81%)
 Strand = Plus / Minus

                                                                         
Query: 296   aaagatcggagccatgaccagtgtgatcgtggcgagcatcttgatgagaacatggatcga 355
             |||||| ||||||||||| || ||||| || || | ||| ||||||||||| || |||||
Sbjct: 61462 aaagataggagccatgacaagcgtgatagtcgccaacattttgatgagaacgtgaatcga 61403

                                           
Query: 356   aggccccgccgtgtctttgaatggatctcc 385
              || || || ||||| ||||| || |||||
Sbjct: 61402 cggtcctgctgtgtccttgaaagggtctcc 61373
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>dbj|D86306.1| Cucurbita moschata mRNA for proton-translocating inorganic
            pyrophosphatase, complete cds
          Length = 2704

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 441  gcaccagtctcgatgtacttcttagc 466
            ||||||| ||||||||||||||||||
Sbjct: 2212 gcaccagcctcgatgtacttcttagc 2187
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>dbj|D88820.1| Acetabularia mediterranea mRNA for inorganic pyrophosphatase,
            complete cds
          Length = 3104

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 369  tctttgaatggatctccaaccgtatcacca 398
            |||||||||||||| ||||| |||||||||
Sbjct: 2881 tctttgaatggatcaccaacggtatcacca 2852
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>ref|NM_104063.1| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine
            kinase AT1G51830 mRNA, complete cds
          Length = 2028

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    atctcaaggatataaacaatt 23
            |||||||||||||||||||||
Sbjct: 1206 atctcaaggatataaacaatt 1226
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>ref|NM_175391.2| Mus musculus RIKEN cDNA 2210421G13 gene (2210421G13Rik), mRNA
          Length = 2046

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 29 atctgtgcatacaaggcatatgaat 53
          |||||||||||||||||||| ||||
Sbjct: 32 atctgtgcatacaaggcataagaat 8
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>emb|AL355986.7| Human DNA sequence from clone RP11-516G5 on chromosome 13, complete
             sequence
          Length = 87831

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 171   cctttcaatgtggcaaaacaatactaaaa 199
             ||||||||||||||| ||||||| |||||
Sbjct: 72605 cctttcaatgtggcataacaatattaaaa 72577
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                            
Query: 350     gatcgaaggccccgccgtgtctttgaatggatctccaaccgtatc 394
               ||||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 5138620 gatcgaagggccggcggtgtccttgaatggatctcccacggtatc 5138576
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>emb|BX571676.5| Zebrafish DNA sequence from clone DKEY-242N5 in linkage group 17,
            complete sequence
          Length = 44074

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 427  ctttaccaccaagtgcaccag 447
            |||||||||||||||||||||
Sbjct: 9535 ctttaccaccaagtgcaccag 9515
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>dbj|AK221400.1| Arabidopsis thaliana mRNA for Putative protein kinase, complete cds,
            clone: RAFL25-47-F19
          Length = 2768

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    atctcaaggatataaacaatt 23
            |||||||||||||||||||||
Sbjct: 1836 atctcaaggatataaacaatt 1856
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>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence,
            complete sequence
          Length = 124511

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    atctcaaggatataaacaatt 23
            |||||||||||||||||||||
Sbjct: 1517 atctcaaggatataaacaatt 1537



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    tctcaaggatataaacaatt 23
            ||||||||||||||||||||
Sbjct: 7154 tctcaaggatataaacaatt 7173
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>dbj|AK075855.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
          library, clone:2210421G13 product:hypothetical protein,
          full insert sequence
          Length = 2046

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 29 atctgtgcatacaaggcatatgaat 53
          |||||||||||||||||||| ||||
Sbjct: 32 atctgtgcatacaaggcataagaat 8
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>gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BAC T14L22 genomic sequence, complete
             sequence
          Length = 95581

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     atctcaaggatataaacaatt 23
             |||||||||||||||||||||
Sbjct: 21888 atctcaaggatataaacaatt 21868



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tctcaaggatataaacaatt 23
             ||||||||||||||||||||
Sbjct: 16251 tctcaaggatataaacaatt 16232
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>dbj|AB006705.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTH12
          Length = 74877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     atctcaaggatataaacaatt 23
             |||||||||||||||||||||
Sbjct: 10486 atctcaaggatataaacaatt 10466
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>emb|AL592187.17| Mouse DNA sequence from clone RP23-188D8 on chromosome 15, complete
              sequence
          Length = 181096

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 29     atctgtgcatacaaggcatatgaat 53
              |||||||||||||||||||| ||||
Sbjct: 125989 atctgtgcatacaaggcataagaat 126013
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>emb|AL591864.14| Mouse DNA sequence from clone RP23-21H3 on chromosome 15, complete
             sequence
          Length = 143342

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 29    atctgtgcatacaaggcatatgaat 53
             |||||||||||||||||||| ||||
Sbjct: 32604 atctgtgcatacaaggcataagaat 32580
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>ref|NM_104062.2| Arabidopsis thaliana kinase AT1G51820 mRNA, complete cds
          Length = 2658

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    tctcaaggatataaacaatt 23
            ||||||||||||||||||||
Sbjct: 1837 tctcaaggatataaacaatt 1856
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>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     tctgtcacagcatatatatt 92
              ||||||||||||||||||||
Sbjct: 190345 tctgtcacagcatatatatt 190364
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>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence
          Length = 189666

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tctgtcacagcatatatatt 92
              ||||||||||||||||||||
Sbjct: 108288 tctgtcacagcatatatatt 108269
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>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence
          Length = 228842

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    ctgcctttaccaccaagtgc 442
              ||||||||||||||||||||
Sbjct: 126443 ctgcctttaccaccaagtgc 126462
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>gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 182933

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    cactgcctttaccaccaagt 440
              ||||||||||||||||||||
Sbjct: 174810 cactgcctttaccaccaagt 174829
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>gb|AC132608.2| Mus musculus BAC clone RP23-451E12 from chromosome 18, complete sequence
          Length = 201478

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tctgtcacagcatatatatt 92
              ||||||||||||||||||||
Sbjct: 185109 tctgtcacagcatatatatt 185090
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>emb|AL118511.25|HSDJ858B6 Human DNA sequence from clone RP5-858B6 on chromosome 1q42.13-43
             Contains two novel genes, the gene for a novel protein
             (FLJ14525) and a CpG island, complete sequence
          Length = 90175

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   aaatgggcagcactgaacctctcc 172
             ||||||||||||||||| ||||||
Sbjct: 52715 aaatgggcagcactgaatctctcc 52738
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>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains
             the CDH22 gene for cadherin-like 22, a novel gene and two
             CpG islands, complete sequence
          Length = 147815

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   tatcaccagtaattgcagcc 410
             ||||||||||||||||||||
Sbjct: 66314 tatcaccagtaattgcagcc 66295
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 351    atcgaaggccccgccgtgtctttg 374
              |||||||||||| |||||||||||
Sbjct: 171830 atcgaaggcccctccgtgtctttg 171807
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>gb|AC016657.5| Homo sapiens chromosome 5 clone RP1-6C3, complete sequence
          Length = 128447

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   gaacctctcctttcaatgtggcaa 186
             |||||||||||| |||||||||||
Sbjct: 26612 gaacctctccttgcaatgtggcaa 26589
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>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201259

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   cactgcctttaccaccaagt 440
             ||||||||||||||||||||
Sbjct: 64673 cactgcctttaccaccaagt 64692
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>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region,
              complete sequence
          Length = 153869

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    ctgcctttaccaccaagtgc 442
              ||||||||||||||||||||
Sbjct: 101412 ctgcctttaccaccaagtgc 101393
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>gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C9 map 3p, complete sequence
          Length = 151142

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tgtcacagcatatatattct 94
             ||||||||||||||||||||
Sbjct: 91041 tgtcacagcatatatattct 91060
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>gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B21 map 3p, complete sequence
          Length = 167220

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tgtcacagcatatatattct 94
             ||||||||||||||||||||
Sbjct: 54326 tgtcacagcatatatattct 54345
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>gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complete sequence
          Length = 180886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    ttgcagccttgtgagcctca 422
              ||||||||||||||||||||
Sbjct: 127489 ttgcagccttgtgagcctca 127508
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>gb|AC069276.4| Homo sapiens chromosome 3 clone RP11-470E10 map 3p, complete sequence
          Length = 184058

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tgtcacagcatatatattct 94
             ||||||||||||||||||||
Sbjct: 11455 tgtcacagcatatatattct 11436
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>gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p, complete sequence
          Length = 185496

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tgtcacagcatatatattct 94
             ||||||||||||||||||||
Sbjct: 19991 tgtcacagcatatatattct 20010


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,832,455
Number of Sequences: 3902068
Number of extensions: 3832455
Number of successful extensions: 71337
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 71242
Number of HSP's gapped (non-prelim): 99
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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