>PGTA_MOUSE (Q9JHK4) Geranylgeranyl transferase type-2 alpha subunit (EC|
           2.5.1.60) (Geranylgeranyl transferase type II alpha
           subunit) (Rab geranylgeranyltransferase alpha subunit)
           (Rab geranyl-geranyltransferase alpha subunit) (Rab GG
           transferase alpha) (
          Length = 567

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 84  VLCCSSVNENDVCLWTCFDRLLI 16
           VLCC  V+  + CL  CF R LI
Sbjct: 244 VLCCLHVSREEACLSVCFSRPLI 266

>PGTA_RAT (Q08602) Geranylgeranyl transferase type-2 alpha subunit (EC|
           2.5.1.60) (Geranylgeranyl transferase type II alpha
           subunit) (Rab geranylgeranyltransferase alpha subunit)
           (Rab geranyl-geranyltransferase alpha subunit) (Rab GG
           transferase alpha) (Ra
          Length = 567

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 84  VLCCSSVNENDVCLWTCFDRLL 19
           VLCC  V+  + CL  CF R L
Sbjct: 244 VLCCVHVSREEACLSVCFSRPL 265

>ERF1A_ARATH (O80337) Ethylene-responsive transcription factor 1A|
           (Ethylene-responsive element-binding factor 1A)
           (EREBP-1A) (AtERF1)
          Length = 268

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 201 REIIGETETIMFESLSLV*T*GCVTGQ 121
           R ++GE+E I+ ES +   T  CVTGQ
Sbjct: 19  RHLLGESEPILSESTASSVTQSCVTGQ 45

>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)|
          Length = 2829

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +2

Query: 26  RSKQVHKQ---TSFSLTEEQHNTLACLLIRQTTGTCPVTQPYVYTSESDSNIIVSVSPMI 196
           R+KQ HKQ   + ++L   +H+   C     + G   V  PY+ T+        S SP  
Sbjct: 788 RNKQRHKQNLCSEYALDSSRHDDSICRSDNFSIGNLTVLSPYINTTVLPG----SSSPRP 843

Query: 197 SLSHRRASKGR 229
           ++   R  K R
Sbjct: 844 TMDGSRPEKDR 854


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,210,241
Number of Sequences: 219361
Number of extensions: 587813
Number of successful extensions: 1491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)