>NCOA5_HUMAN (Q9HCD5) Nuclear receptor coactivator 5 (NCoA-5) (Coactivator|
           independent of AF-2) (CIA)
          Length = 579

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 68  KTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQDCTPRRAGQTATAATP 223
           K +L RS +   P P SR   +PL    GA L       P ++GQ   +ATP
Sbjct: 371 KERLMRSSTDSLPGPISR---QPLGATSGASLKTQPSSQPLQSGQVLPSATP 419

>NKX25_MOUSE (P42582) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)|
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 318

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 56  SISSKTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQDCTPRRAGQTATAATPARVK 235
           ++    +L ++ + GA +P +R  R+P  +   AQ+Y ++    RR  Q    + P R +
Sbjct: 114 ALQKAVELDKAETDGAERPRARRRRKPRVLFSQAQVYELE----RRFKQQRYLSAPERDQ 169

Query: 236 CYSALLLT 259
             S L LT
Sbjct: 170 LASVLKLT 177

>NCOA5_MOUSE (Q91W39) Nuclear receptor coactivator 5 (NCoA-5) (Coactivator|
           independent of AF-2) (CIA)
          Length = 579

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 68  KTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQDCTPRRAGQTATAATP 223
           K +L RS +   P P SR   +PL    G+ L       P ++GQ   +ATP
Sbjct: 371 KERLLRSSADSLPGPISR---QPLGAASGSSLKSQPSSQPLQSGQVLPSATP 419

>SUV9_DROME (P45975) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           (EC 2.1.1.43) (Histone H3-K9 methyltransferase)
           (H3-K9-HMTase) (Protein suppressor of variegation 3-9)
          Length = 635

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 35  HHNDKYPSISSKTKLSRSHSQ--GAPKPSSRLLREPLAVI 148
           H  DK PS++   KL R  S   GAP P+S+  +  + VI
Sbjct: 171 HDVDKIPSLNGFAKLKRRRSSCVGAPTPNSKRSKNNMGVI 210

>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 53  PSISSKTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQDCTPRRA-GQTATAATPAR 229
           P+  S T+L R  +  AP+PSSR  R P   IP A+        PRR  G    AA  AR
Sbjct: 250 PAAPSATRLPRRTTPSAPRPSSRPARPP---IPAAR------PPPRRTPGTPRPAAARAR 300

>PGK_CAUCR (Q9A3F5) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 396

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = +2

Query: 44  DKYPSISSKTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQDCTPRRAGQTATAATP 223
           DK   +       R   +  P+ S   + EPLA + GA + FV DC    A +       
Sbjct: 49  DKGAKVVLLAHFDRPKGKVVPEMSLAFVAEPLAALLGAPVAFVGDCVGPAAAEVVNGLAD 108

Query: 224 ARVKCYSALLLTLLRWAAG 280
             V      LL  +R+ AG
Sbjct: 109 GGV-----ALLENVRFHAG 122

>NKX25_HUMAN (P52952) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)|
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 56  SISSKTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQDCTPRRAGQTATAATPARVK 235
           ++    +L ++ +  A +P +R  R+P  +   AQ+Y ++    RR  Q    + P R +
Sbjct: 115 ALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELE----RRFKQQRYLSAPERDQ 170

Query: 236 CYSALLLT 259
             S L LT
Sbjct: 171 LASVLKLT 178

>ZN343_HUMAN (Q6P1L6) Zinc finger protein 343|
          Length = 599

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 21  ILRLIITMINIHQFHLRQNSPGHTVKERQSLPHVCC 128
           +L++ + +   + FH   +SPGH  ++ Q   HV C
Sbjct: 128 VLQIFLGLCAENHFHPGNSSPGHWKQQGQQYSHVSC 163

>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 263

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 65  SKTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQDCTPRRAGQTATAATPARVK 235
           ++ +L R+  +GAP+P +          P          TP      AT ATPARV+
Sbjct: 144 ARLRLRRAGGEGAPEPPATPATPATPATPATP------ATPATPATPATPATPARVR 194

>METE_PASMU (P57843) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 757

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 89  HSQGAPKPSS--RLLREPLAVIPGAQLYFVQDCTPRRAGQTATAA 217
           HS   PK     RLLR+ L V+P  +L+   DC  +  G   T A
Sbjct: 696 HSPRVPKAEEIERLLRKALNVVPKERLWVNPDCGLKTRGWPETIA 740

>PPCK_ANASU (O09460) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 532

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
 Frame = +2

Query: 5   KKMTVNTEINHHNDKYPSISSKTKLSRSHSQGAPKPSSRLLREPLAVIPGAQL------- 163
           K +T NT ++     YP    K  +       A K    L  +   V+P   +       
Sbjct: 320 KSVTENTRVS-----YPIFHIKNIVKPVSKAPAAKRVIFLSADAFGVLPPVSILSKEQTK 374

Query: 164 -YFVQDCTPRRAG--QTATAATPARVKCYSALLLTLLRWAAGPVMISREKKLG 313
            YF+   T + AG  +  T  TP    C+ A  LTL       V++ R +  G
Sbjct: 375 YYFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLTLPPTKYAEVLVKRMEASG 427

>CAHH_MONPV (Q8V4Y0) Cell surface-binding protein (Carbonic anhydrase homolog)|
          Length = 304

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +2

Query: 23  TEINHHNDKYPSISSKTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQDCTPRRAGQ 202
           T IN H+D+      +T LS S+ +G P   +   R P  +    Q+Y+        +G+
Sbjct: 187 TPINIHSDQLSKF--RTLLSSSNHEGKPHYITENYRNPYKLNDDTQVYY--------SGE 236

Query: 203 TATAATPARVK 235
              AAT + V+
Sbjct: 237 IIRAATTSPVR 247

>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 53   PSISSKTKLSRSHSQGAPKPSSRLLREPLAVIPGAQLYFVQ-DCTPRRA-GQTAT--AAT 220
            PS  S++KL    +   P        E  +  PGA L+  Q + TPRR+ G  AT  A +
Sbjct: 2384 PSPVSRSKLQERRTLSMPDLDKLCNGEDDSASPGAVLFKTQLEITPRRSKGSQATSPAGS 2443

Query: 221  PAR 229
            PAR
Sbjct: 2444 PAR 2446


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,105,474
Number of Sequences: 219361
Number of extensions: 935007
Number of successful extensions: 2368
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)