ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27b07 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 181 bits (459), Expect = 7e-46 Identities = 90/104 (86%), Positives = 90/104 (86%) Frame = -1 Query: 449 KHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRK 270 KHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRK Sbjct: 948 KHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRK 1007 Query: 269 VVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 138 VVDVAREVAKMEVPSYRRHL DIPLVSVYFR Sbjct: 1008 VVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 181 bits (459), Expect = 7e-46 Identities = 90/104 (86%), Positives = 90/104 (86%) Frame = -1 Query: 449 KHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRK 270 KHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRK Sbjct: 948 KHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRK 1007 Query: 269 VVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 138 VVDVAREVAKMEVPSYRRHL DIPLVSVYFR Sbjct: 1008 VVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 148 bits (374), Expect = 5e-36 Identities = 70/104 (67%), Positives = 81/104 (77%) Frame = -1 Query: 449 KHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRK 270 KH+E SWTVWDRW+V GN+TL ELL+W +KGL AYSISCGTSLLYN+MF RHK+RL +K Sbjct: 950 KHKETSWTVWDRWSVQGNLTLAELLQWFADKGLTAYSISCGTSLLYNNMFARHKDRLTKK 1009 Query: 269 VVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 138 VVD+AREVAK++VP YRRHL DIPLVSVYFR Sbjct: 1010 VVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 64.7 bits (156), Expect = 1e-10 Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 3/75 (4%) Frame = -1 Query: 425 VWDRWTVTGNITLRELLEWL-KEKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVA 255 +WDR+ + G+ITL+ELL+ KE+GL +S G SLLY S FP + K+RL K+ + Sbjct: 108 IWDRFELNGDITLQELLDHFEKEEGLTISMLSYGVSLLYASFFPPKKVKDRLGLKLTSLI 167 Query: 254 REVAKMEVPSYRRHL 210 +EV+K EVPS+ ++L Sbjct: 168 KEVSKKEVPSHVKNL 182
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 53.1 bits (126), Expect = 3e-07 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Frame = -1 Query: 425 VWDRWTVTGNITLRELLEWL-KEKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVA 255 +WDR+ + G+I L +L+E K++GL +S G SLLY S FP + KERL+ + + Sbjct: 927 IWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLV 986 Query: 254 REVAKMEVPSY 222 + V K ++P++ Sbjct: 987 KLVTKKDIPAH 997
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Frame = -1 Query: 425 VWDRWTVTGNITLRELLEWL-KEKGLNAYSISCGTSLLYNSMFPRHK--ERLDRKVVDVA 255 +WDR+ + + TL+EL+++ KE+GL +S G SLLY + P K ERL K+ ++ Sbjct: 916 IWDRYNLP-DCTLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELV 974 Query: 254 REVAKMEVPSYRRHL 210 ++ K ++ +R+HL Sbjct: 975 EQITKKKLEPFRKHL 989
>UBE1X_MOUSE (P31253) Ubiquitin-activating enzyme E1 X (Fragment)| Length = 450 Score = 49.3 bits (116), Expect = 4e-06 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 9/82 (10%) Frame = -1 Query: 431 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 279 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 338 WTLWDRFEVQGVQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERL 397 Query: 278 DRKVVDVAREVAKMEVPSYRRH 213 D+ + ++ V+K ++ + RH Sbjct: 398 DQPMTEIVSRVSKRKLGRHVRH 419
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 47.0 bits (110), Expect = 2e-05 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Frame = -1 Query: 431 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 279 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 952 WTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERL 1011 Query: 278 DRKVVDVAREVAKMEVPSYRRHL 210 D+ + ++ V+K ++ + R L Sbjct: 1012 DQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 47.0 bits (110), Expect = 2e-05 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Frame = -1 Query: 431 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 279 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 952 WTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERL 1011 Query: 278 DRKVVDVAREVAKMEVPSYRRHL 210 D+ + ++ V+K ++ + R L Sbjct: 1012 DQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 47.0 bits (110), Expect = 2e-05 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Frame = -1 Query: 431 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 279 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 952 WTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERL 1011 Query: 278 DRKVVDVAREVAKMEVPSYRRHL 210 D+ + ++ V+K ++ + R L Sbjct: 1012 DQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)| Length = 442 Score = 45.8 bits (107), Expect = 5e-05 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Frame = -1 Query: 431 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 279 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 336 WTLWDRFDVQGLQPSGEEMTLKQFLDYFKTEHKLEVIMLSQGVSMLYSVFMPASKLKERL 395 Query: 278 DRKVVDVAREVAKMEVPSYRRHL 210 D+ + ++ V+K ++ + + L Sbjct: 396 DQPMTEIVSCVSKQKLGHHVKSL 418
>Y062_METJA (Q60369) Hypothetical protein MJ0062| Length = 207 Score = 32.0 bits (71), Expect = 0.73 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -1 Query: 386 RELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAR 252 +++LE+LK++ LN + CGT LY E+ RKV ++ R Sbjct: 19 KKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKR 63
>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 654 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 162 DVDILVIVILTGHHDVEMTPVRGHLHLG 245 D+DIL + I GH V + VRG HLG Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295
>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 398 Score = 30.8 bits (68), Expect = 1.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 227 RAPPSWPPPWQHQLP 271 + PP WPPPW Q+P Sbjct: 112 KGPPDWPPPWGVQMP 126
>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2) Length = 984 Score = 30.4 bits (67), Expect = 2.1 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 6/97 (6%) Frame = +3 Query: 45 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDILVIVILTGHHDVEMTPV 224 +LT++NAT S + S+ E + +DI+ I L + E+ + Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353 Query: 225 RGHLHLGHLPGNINYLSVKPFLV------PGEHRVVE 317 + GH GN + +S +P +V P EH+ E Sbjct: 354 EKPILRGHNEGNQSLISAEPIVVSSDEEGPVEHKSSE 390
>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD| Length = 311 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 168 DILVIVILTGHHDVEMTPVRGHLHLGHL 251 D+ VI L GH D+ T + HLH HL Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294
>SYY2_BACCZ (Q631P9) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 219 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 335 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACC1 (Q72Y10) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 219 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 335 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACAN (Q81XC6) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 219 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 335 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACCR (Q815S0) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 420 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 219 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 335 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>MURA1_CLOTE (Q899K4) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (EC| 2.5.1.7) (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) Length = 421 Score = 29.3 bits (64), Expect = 4.7 Identities = 9/30 (30%), Positives = 20/30 (66%) Frame = -1 Query: 335 SCGTSLLYNSMFPRHKERLDRKVVDVAREV 246 +CG ++ N++ P+H E + K++++ EV Sbjct: 248 ACGGEVIVNNVIPKHLESISAKLIEMGAEV 277
>BCHN_RHOS4 (Q9RFD4) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 428 Score = 29.3 bits (64), Expect = 4.7 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = -3 Query: 426 GLGPVDCNGQHHAEGAPGV 370 G+GPV C HHA APGV Sbjct: 198 GIGPVRCLPAHHAAEAPGV 216
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 29.3 bits (64), Expect = 4.7 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Frame = -1 Query: 437 LSWTVWDRWTVTG---NITLRELLEWLKEK-GLNAYSISCGTSLLYNSMFPRHK--ERLD 276 L WT WDR V TL LL L+E+ GL + G++LLY + + K + L Sbjct: 908 LKWTSWDRLKVPAGQPERTLESLLAHLQEQHGLRVRILLHGSALLYAAGWSPEKQAQHLP 967 Query: 275 RKVVDVAREV 246 +V ++ +++ Sbjct: 968 LRVTELVQQL 977
>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Granulin-1; Granulin-2; Granulin-3; Granulin-4; Granulin-5; Granulin-6; Granulin-7] (Fragment) Length = 591 Score = 28.9 bits (63), Expect = 6.2 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +2 Query: 221 GKRAPPSWPPPWQHQLPFCQAVPCAWGT*SCRAARCHRICCKRSD 355 G PPS P P + ++ + V C G CR A CC S+ Sbjct: 361 GPPGPPSPPGPLRSEISCDEVVSCRPGNICCRLASGEWGCCPSSE 405
>ACUC_BACSU (P39067) Acetoin utilization protein acuC| Length = 387 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +2 Query: 215 DAGKRAPPSWPPPWQHQLPFCQAVPCAW 298 D G PP W WQ Q P A+P +W Sbjct: 323 DPGHEIPPEWIVKWQKQCPV--ALPSSW 348
>UVRC_RALEJ (Q46Z26) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 663 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 159 RDVDILVIVILTGHHDVEMTPVRGHLHLG 245 RD+D+L + + G V + VRG HLG Sbjct: 267 RDIDVLAVAVEGGRACVNLAMVRGGRHLG 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,325,105 Number of Sequences: 219361 Number of extensions: 1048263 Number of successful extensions: 3876 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3689 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3867 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
