ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 81 1e-15
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 81 1e-15
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 67 2e-11
4SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-) (... 31 1.2
5FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) ... 31 1.6
6UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Exci... 30 3.5
7XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD 30 3.5
8UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment) 29 4.5
9ACUC_BACSU (P39067) Acetoin utilization protein acuC 29 5.9

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 43/57 (75%), Positives = 43/57 (75%)
 Frame = -1

Query: 441  SMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 271
            SMFPRHKERLDRKVVDVAREVAKMEVPSYRRHL              DIPLVSVYFR
Sbjct: 995  SMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 43/57 (75%), Positives = 43/57 (75%)
 Frame = -1

Query: 441  SMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 271
            SMFPRHKERLDRKVVDVAREVAKMEVPSYRRHL              DIPLVSVYFR
Sbjct: 995  SMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 34/57 (59%), Positives = 40/57 (70%)
 Frame = -1

Query: 441  SMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 271
            +MF RHK+RL +KVVD+AREVAK++VP YRRHL              DIPLVSVYFR
Sbjct: 997  NMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053



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>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific
           protease 2)
          Length = 984

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = +1

Query: 178 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 357
           +LT++NAT   S               + S+ E   +   +DIV I  L    + E+  +
Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353

Query: 358 RGHLHLGHLPGNINYLSVKPFLV------PGEHR 441
              +  GH  GN + +S +P +V      P EH+
Sbjct: 354 EKPILRGHNEGNQSLISAEPIVVSSDEEGPVEHK 387



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>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV)
          Length = 398

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 360 RAPPSWPPPWQHQLP 404
           + PP WPPPW  Q+P
Sbjct: 112 KGPPDWPPPWGVQMP 126



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>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 654

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 295 DVDIVVIVILTGHHDVEMTPVRGHLHLG 378
           D+DI+ + I  GH  V +  VRG  HLG
Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295



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>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD|
          Length = 311

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 301 DIVVIVILTGHHDVEMTPVRGHLHLGHL 384
           D+ VI  L GH D+  T +  HLH  HL
Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294



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>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)|
          Length = 205

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -1

Query: 441 SMFP--RHKERLDRKVVDVAREVAKMEVPSYRRHL 343
           S FP  + K+RL  K+  + +EV+K EVPS+ ++L
Sbjct: 148 SFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNL 182



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>ACUC_BACSU (P39067) Acetoin utilization protein acuC|
          Length = 387

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 348 DAGKRAPPSWPPPWQHQLPFCQAVPCAW 431
           D G   PP W   WQ Q P   A+P +W
Sbjct: 323 DPGHEIPPEWIVKWQKQCPV--ALPSSW 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,909,810
Number of Sequences: 219361
Number of extensions: 1090994
Number of successful extensions: 2836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2833
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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