>HNF1B_PIG (Q03365) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1) (FPC-binding
           protein) (FPCB)
          Length = 559

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 25  LLHPANKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYPEE 147
           LL P  K+Q+S+     SGGG+   S+    H L+HH P++
Sbjct: 396 LLSPDGKMQISV-----SGGGLPPVSTLTNIHSLSHHNPQQ 431

>HNF1B_MOUSE (P27889) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein
           LFB3)
          Length = 558

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 22  ALLHPANKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYPEE 147
           +LL P +K+Q+++     SGGG+   S+    H L+HH P++
Sbjct: 394 SLLSPDSKMQITV-----SGGGLPPVSTLTNIHSLSHHNPQQ 430

>COX1_RHILE (Q08855) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Cytochrome aa3 subunit 1)
          Length = 538

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 31  HPANKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYP 141
           HP   + ++I+SLHI+G    L + N +T  LN   P
Sbjct: 163 HPGPAVDLAIFSLHIAGASSILGAINFITTILNMRAP 199

>DLG3_RAT (Q62936) Discs large homolog 3 (Synapse-associated protein 102)|
           (SAP102) (PSD-95/SAP90-related protein 1)
          Length = 849

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 212 PPKEIPKKTTP-VSYPCKI*WSDGTCISLGGERQISPAP 325
           PPK +P K TP ++      W + TC +     Q SPAP
Sbjct: 86  PPKPVPGKNTPKLNGSGPSWWPECTCTNRDWYEQASPAP 124

>YHZ8_YEAST (P38884) Hypothetical 36.5 kDa protein in EGD2-SUN1 intergenic|
           region
          Length = 321

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 216 QKKSQKKQPQCLIPAKSNGLMVLAYHWEVNGKFHLLQASDRKIYGK 353
           +K S +K    +I   +NG +  +YH   N +F ++   + ++ GK
Sbjct: 247 RKGSVRKNDDLIIELLANGALQFSYHDSKNNEFEVMGVVNNQLVGK 292

>ARP7_YEAST (Q12406) Actin-like protein ARP7 (Chromatin structure remodeling|
           complex protein ARP7) (SWI/SNF complex component ARP7)
          Length = 477

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 180 CIVMYSASHFTHQKKSQKKQPQCLIPA 260
           C+V+++ SH T    S  + PQC+IP+
Sbjct: 7   CVVIHNGSHRTVAGFSNVELPQCIIPS 33

>PNUT_DROME (P40797) Protein peanut|
          Length = 539

 Score = 23.5 bits (49), Expect(2) = 6.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 67  LHISGGGIHLQSSNKVTHHL 126
           L  SGGG     SNK+TH L
Sbjct: 75  LDTSGGGASNGDSNKLTHDL 94



 Score = 22.7 bits (47), Expect(2) = 6.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 108 QGYTPSKPPLP*RNWPL 158
           Q   P KPPLP R  P+
Sbjct: 101 QAQKPQKPPLPVRQKPM 117

>DLG3_MOUSE (P70175) Discs large homolog 3 (Synapse-associated protein 102)|
           (SAP102)
          Length = 849

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 212 PPKEIPKKTTP-VSYPCKI*WSDGTCISLGGERQISPAP 325
           PPK +P K+TP ++      W + TC +     Q SPAP
Sbjct: 86  PPKPVPGKSTPKLNGSGPGWWPECTCTNRDWYEQASPAP 124

>HNF1B_RAT (P23899) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1)
          Length = 557

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 22  ALLHPANKLQMSIYSLHISGGGIHLQSSNKVTHHLNHHYPEE 147
           +LL P +K+      + +SGGG+   S+    H L+HH P++
Sbjct: 394 SLLSPDSKM------ISVSGGGLPPVSTLTNIHSLSHHNPQQ 429


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,550,731
Number of Sequences: 219361
Number of extensions: 1170833
Number of successful extensions: 2410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2405
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)