>UBP36_HUMAN (Q9P275) Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 36)
            (Ubiquitin-specific-processing protease 36)
            (Deubiquitinating enzyme 36)
          Length = 1121

 Score = 35.8 bits (81), Expect = 0.030
 Identities = 12/24 (50%), Positives = 20/24 (83%)
 Frame = -1

Query: 212  VLDEWDEEYDRGKANQVRKAKEDE 141
            V+D+WDEE+DRGK  +++K K ++
Sbjct: 1066 VVDDWDEEFDRGKEKKIKKFKREK 1089

>MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein (MyT1L protein)|
           (MyT1-L)
          Length = 1186

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 206 DEWDEEYDRGKANQVRKAKEDEDDDGTNPFQAEANHVSARKEKQ 75
           DE DEE DR +  ++ +  ED+D+DG +    E       +E++
Sbjct: 121 DEEDEEGDREEEEEIEEEDEDDDEDGEDVEDEEEEEEEEEEEEE 164

>CASQ2_RAT (P51868) Calsequestrin-2 precursor (Calsequestrin, cardiac muscle|
           isoform)
          Length = 413

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 209 LDEWDEEYDRGKANQVRKAKEDEDDDGTN 123
           L++W E+   GK N      EDEDDDG N
Sbjct: 358 LEDWIEDVLSGKINTEDDDNEDEDDDGDN 386

>K1949_MACMU (Q5TM66) Protein KIAA1949 homolog|
          Length = 613

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 180 WKGKPGQKSEG---RRGRRRHEPLPG*GKPRISAKGETKTLEQAGQTTSLGELKRRRP 16
           W+ + G++ +G   + GR+   P+PG      +   ET T E  G +++  E   +RP
Sbjct: 261 WRLRSGEERQGYSEKCGRKEEWPVPGVAPEETTELSETLTREAQGSSSTGMEAAEQRP 318

>MUTS_ACIAD (Q6FC54) DNA mismatch repair protein mutS|
          Length = 881

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 144 RGRRRHEPLPG*GKPRISAKGETKTLEQAGQTTSLGE 34
           RG+   EP+P  G P  +A+G    L +AGQT ++ E
Sbjct: 61  RGKANGEPIPMAGVPYHAAEGYLARLVRAGQTVAICE 97

>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-4) (Irregular xylem protein 5)
           (AtIRX5)
          Length = 1049

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
 Frame = -1

Query: 218 GYVLDEWDEEYDRGKANQVRK--------AKEDEDDDGTNPFQAEANHVSARK 84
           GY   EW E  D+ KA Q ++          ED++DD      AEA     RK
Sbjct: 151 GYTDAEWKERVDKWKARQEKRGLVTKGEQTNEDKEDDEEEYLDAEARQPLWRK 203

>CASQ2_MOUSE (O09161) Calsequestrin-2 precursor (Calsequestrin, cardiac muscle|
           isoform)
          Length = 415

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 209 LDEWDEEYDRGKANQVRKAKEDEDDDG 129
           L++W E+   GK N      EDEDDDG
Sbjct: 358 LEDWIEDVLSGKINTEDDDNEDEDDDG 384

>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9|
          Length = 531

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 201 VG*GVRPWKGKPGQKSEGRRGRRRHEPLPG*GKPRISAKGET 76
           +G   R W+G PG++  G     R     G G P +S  G+T
Sbjct: 105 MGRASRSWEGSPGEQPRGGGAGGRGRRGRGRGSPHLSGAGDT 146

>HSP3_MURBR (P83213) Sperm protamine P3|
          Length = 54

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 186 RPWKGKPGQKSEGRRGRRRHEPLPG*GKPRISAKGE 79
           R  KGK G+K +G++ RRR     G GK +   KG+
Sbjct: 5   RRGKGKGGKKKKGKKRRRRGRKGKGKGKKKGKRKGK 40

>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)|
          Length = 542

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -3

Query: 183 PWKGKPGQKSEGRRGRRRHEPLPG*GKPRISAKGETKTLEQAGQTTSLGELKRRRPKKT 7
           P   KP +   GRRGR R EP P   + R       + L          E K+R P++T
Sbjct: 54  PTGSKPRKPGAGRRGRPREEPSPDPAQARAPQTVYARFLRDP-------EAKKRDPRET 105

>DAB_DROME (P98081) Protein disabled|
          Length = 2224

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
 Frame = -3

Query: 192  GVRPWKGK----PGQKSEGRRGRRRHEPLPG*GKPRISAKGETKTLEQA-----GQTTSL 40
            G  PW G+    PGQKS  R              P  +A+ E +  E       GQT S 
Sbjct: 1813 GSSPWDGEEPALPGQKSWKR--------------PASAAETERRLAESRRAVALGQTPSD 1858

Query: 39   GELKRRRPKKTR 4
            GE +RR  KKTR
Sbjct: 1859 GEKERRFRKKTR 1870

>CASQ2_RABIT (P31235) Calsequestrin-2 precursor (Calsequestrin, cardiac muscle|
           isoform)
          Length = 409

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 LDEWDEEYDRGKANQVRKAKEDEDDDGTN 123
           L++W E+   GK N      EDEDDD  N
Sbjct: 358 LEDWIEDVLSGKINTEDDDNEDEDDDDDN 386

>RS5_BIFLO (P59122) 30S ribosomal protein S5|
          Length = 233

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 177 KGKPGQKSEGRRGRRRH 127
           KG+ GQ+ EGRRG RR+
Sbjct: 19  KGRRGQRGEGRRGERRN 35

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = -1

Query: 245 YRSSGKKSIGYVLDEWDE-----EYDRGKANQVR--KAKEDEDDDGTNPFQAEANHVSAR 87
           +R  GK+      DE DE     E DR +A++ R  + +EDEDDD       E++H  A 
Sbjct: 201 HRGHGKE------DEEDEDDDSTESDRHQAHRHRGHREEEDEDDDDDEGDSTESDHHQAH 254

Query: 86  KEK 78
           + +
Sbjct: 255 RHR 257

>CTPAL_STAAC (Q5HG01) Probable ctpA-like serine protease (EC 3.4.21.-)|
          Length = 496

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 233 GKKSIGYVLDEWDEEYDRGKANQVRKAKEDEDDDGTNPFQAEANH 99
           G  ++GY +D    ++D+   NQV+  ++    + T  F  E N+
Sbjct: 427 GLSALGYKVDNESTQFDKALENQVKAFQQANKLEVTGEFNKETNN 471

>CTPAL_STAAB (Q2YXZ9) Probable ctpA-like serine protease (EC 3.4.21.-)|
          Length = 496

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 233 GKKSIGYVLDEWDEEYDRGKANQVRKAKEDEDDDGTNPFQAEANH 99
           G  ++GY +D    ++D+   NQV+  ++    + T  F  E N+
Sbjct: 427 GLSALGYKVDNESTQFDQALENQVKAFQQTNKLEVTGEFNKETNN 471

>SAN1_YEAST (P22470) Protein SAN1|
          Length = 610

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 206 DEWDEEYDRGKANQVRKAKEDEDDDGT 126
           DE+++E D  KA + R ++ +E+ +GT
Sbjct: 170 DEYEDEVDSTKAKRKRDSENEEESEGT 196

>CTPAL_STAAN (Q7A5M9) Probable ctpA-like serine protease (EC 3.4.21.-)|
          Length = 496

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 233 GKKSIGYVLDEWDEEYDRGKANQVRKAKEDEDDDGTNPFQAEANH 99
           G  ++GY +D    ++D+   NQV+  ++    + T  F  E N+
Sbjct: 427 GLSALGYKVDNESTQFDQALENQVKAFQQANKLEVTGEFNKETNN 471

>CTPAL_STAAM (Q99U67) Probable ctpA-like serine protease (EC 3.4.21.-)|
          Length = 496

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 233 GKKSIGYVLDEWDEEYDRGKANQVRKAKEDEDDDGTNPFQAEANH 99
           G  ++GY +D    ++D+   NQV+  ++    + T  F  E N+
Sbjct: 427 GLSALGYKVDNESTQFDQALENQVKAFQQANKLEVTGEFNKETNN 471


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,151,164
Number of Sequences: 219361
Number of extensions: 471619
Number of successful extensions: 2561
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2534
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)