Clone Name | rbastl27a12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY224488.1| Oryza sativa (japonica cultivar-group) isolate 30843 putative ubiquitin-specific protease mRNA, partial cds Length = 2529 Score = 67.9 bits (34), Expect = 1e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 174 ctttccacggtcgtactcctcatcccactcatccagcacatatccaatgctctt 227 |||||||||||| |||||||| ||||| ||||| | |||||||||||||||||| Sbjct: 2385 ctttccacggtcatactcctcgtcccattcatctaacacatatccaatgctctt 2332
>dbj|AB117997.1| Oryza sativa (japonica cultivar-group) bip110 mRNA for BRI1-KD interacting protein 110, partial cds Length = 1791 Score = 67.9 bits (34), Expect = 1e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 174 ctttccacggtcgtactcctcatcccactcatccagcacatatccaatgctctt 227 |||||||||||| |||||||| ||||| ||||| | |||||||||||||||||| Sbjct: 1411 ctttccacggtcatactcctcgtcccattcatctaacacatatccaatgctctt 1358
>dbj|AK102933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114H16, full insert sequence Length = 3013 Score = 67.9 bits (34), Expect = 1e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 174 ctttccacggtcgtactcctcatcccactcatccagcacatatccaatgctctt 227 |||||||||||| |||||||| ||||| ||||| | |||||||||||||||||| Sbjct: 2632 ctttccacggtcatactcctcgtcccattcatctaacacatatccaatgctctt 2579
>dbj|AK073840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H15, full insert sequence Length = 2549 Score = 67.9 bits (34), Expect = 1e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 174 ctttccacggtcgtactcctcatcccactcatccagcacatatccaatgctctt 227 |||||||||||| |||||||| ||||| ||||| | |||||||||||||||||| Sbjct: 2168 ctttccacggtcatactcctcgtcccattcatctaacacatatccaatgctctt 2115
>dbj|AK061673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G09, full insert sequence Length = 1583 Score = 67.9 bits (34), Expect = 1e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 174 ctttccacggtcgtactcctcatcccactcatccagcacatatccaatgctctt 227 |||||||||||| |||||||| ||||| ||||| | |||||||||||||||||| Sbjct: 1174 ctttccacggtcatactcctcgtcccattcatctaacacatatccaatgctctt 1121
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Plus Query: 129 gccgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||||| Sbjct: 2401068 gccgtcgtcgtcctcgtcttcct 2401090
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 129 gccgtcgtcgtcctcgtcttcc 150 |||||||||||||||||||||| Sbjct: 50908 gccgtcgtcgtcctcgtcttcc 50929
>gb|AY107368.1| Zea mays PCO129627 mRNA sequence Length = 1313 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 181 cggtcgtactcctcatcccactcatc 206 |||||||||||||| ||||||||||| Sbjct: 831 cggtcgtactcctcgtcccactcatc 806
>ref|XM_471552.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1284 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 955 cgtcgtcgtcctcgtcttcct 935
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 28667 cgtcgtcgtcctcgtcttcct 28687
>ref|XM_368956.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00288.4) partial mRNA Length = 2883 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 100 cgtcgtcgtcctcgtcttcct 80
>emb|Z81515.1|CEF26H11 Caenorhabditis elegans Cosmid F26H11, complete sequence Length = 28057 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 1623 cgtcgtcgtcctcgtcttcct 1643
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05, complete sequence Length = 185211 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 89678 cgtcgtcgtcctcgtcttcct 89658
>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16, complete sequence Length = 114051 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 30344 cgtcgtcgtcctcgtcttcct 30364
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 106638 cgtcgtcgtcctcgtcttcct 106658
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 20596010 cgtcgtcgtcctcgtcttcct 20596030 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 12264797 cgtcgtcgtcctcgtcttcct 12264777
>gb|AE009625.1| Brucella melitensis 16M chromosome I, section 182 of 195 of the complete sequence Length = 9478 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 4882 cgtcgtcgtcctcgtcttcct 4862
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 28528 cgtcgtcgtcctcgtcttcct 28548
>dbj|AK109869.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A08, full insert sequence Length = 1470 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 1006 cgtcgtcgtcctcgtcttcct 986
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cgtcgtcgtcctcgtcttcct 151 ||||||||||||||||||||| Sbjct: 24929 cgtcgtcgtcctcgtcttcct 24949
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 gtcgtcgtcctcgtcttccttcgc 155 ||||||||||||||| |||||||| Sbjct: 64619 gtcgtcgtcctcgtcctccttcgc 64642
>emb|AL031290.1|HS774I24 Human DNA sequence from clone RP4-774I24 on chromosome 1q24.1-24.3 Contains the 3' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and the 3' end of the ASTN gene for astrotactin, complete sequence Length = 121780 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gcctcagcctggaaggggtt 125 |||||||||||||||||||| Sbjct: 114487 gcctcagcctggaaggggtt 114468
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 actcctcatcccactcatccagca 211 ||||||| |||||||||||||||| Sbjct: 4836877 actcctcttcccactcatccagca 4836900
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 3.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 113 cctggaaggggttcgtgccgtcgtcgtcctcg 144 |||||| ||||||||||||| ||||| ||||| Sbjct: 2856816 cctggacggggttcgtgccgccgtcgccctcg 2856785
>gb|AC092133.2| Homo sapiens chromosome 16 clone RP11-20D16, complete sequence Length = 156351 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 ttccttcgcttttctgacctggtt 170 |||||| ||||||||||||||||| Sbjct: 69668 ttcctttgcttttctgacctggtt 69645
>gb|AC108131.2| Homo sapiens chromosome 16 clone RP11-337N9, complete sequence Length = 151941 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 ttccttcgcttttctgacctggtt 170 |||||| ||||||||||||||||| Sbjct: 127105 ttcctttgcttttctgacctggtt 127082
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gccgtcgtcgtcctcgtctt 148 |||||||||||||||||||| Sbjct: 28453376 gccgtcgtcgtcctcgtctt 28453357
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 gtcgtcgtcctcgtcttccttcgc 155 ||||||||||||||| |||||||| Sbjct: 20066294 gtcgtcgtcctcgtcctccttcgc 20066317
>gb|AC135776.3| Homo sapiens chromosome 16 clone CTD-2144E22, complete sequence Length = 168546 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 ttccttcgcttttctgacctggtt 170 |||||| ||||||||||||||||| Sbjct: 45239 ttcctttgcttttctgacctggtt 45216
>dbj|AB193327.1| Daphnia magna nrk, vasa genes for neurospecific receptor kinase, VASA RNA helicase, complete cds Length = 17324 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gtcgtcgtcctcgtcttcct 151 |||||||||||||||||||| Sbjct: 1741 gtcgtcgtcctcgtcttcct 1760
>dbj|AB190367.1| Pyrus pyrifolia PpGAL6 mRNA for beta-D-galactosidase, complete cds Length = 3000 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgccgtcgtcgtcctcgtct 147 |||||||||||||||||||| Sbjct: 61 tgccgtcgtcgtcctcgtct 42
>gb|AC093802.3| Homo sapiens BAC clone RP11-315F22 from 2, complete sequence Length = 165535 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 atccaatgctcttcttccct 234 |||||||||||||||||||| Sbjct: 126067 atccaatgctcttcttccct 126048
>gb|AC009406.5| Homo sapiens BAC clone RP11-201J10 from 2, complete sequence Length = 156817 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aaggtctttgtttctccttt 87 |||||||||||||||||||| Sbjct: 154315 aaggtctttgtttctccttt 154296
>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03 Length = 166128 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gccgtcgtcgtcctcgtctt 148 |||||||||||||||||||| Sbjct: 60409 gccgtcgtcgtcctcgtctt 60390
>dbj|AK107208.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B11, full insert sequence Length = 2043 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gccgtcgtcgtcctcgtctt 148 |||||||||||||||||||| Sbjct: 100 gccgtcgtcgtcctcgtctt 119
>dbj|AK099027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124F09, full insert sequence Length = 989 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 gtcgtcgtcctcgtcttccttcgc 155 ||||||||||||||| |||||||| Sbjct: 172 gtcgtcgtcctcgtcctccttcgc 195
>dbj|AK060336.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C05, full insert sequence Length = 1082 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 gtcgtcgtcctcgtcttccttcgc 155 ||||||||||||||| |||||||| Sbjct: 217 gtcgtcgtcctcgtcctccttcgc 240
>emb|AL132780.5|CNS01DTK Human chromosome 14 DNA sequence BAC R-298I3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 191946 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 tccaaggtctttgtttctcctttc 88 ||||||||| |||||||||||||| Sbjct: 315 tccaaggtcattgtttctcctttc 338
>emb|AL135998.6|CNS01DVO Human chromosome 14 DNA sequence BAC R-137H15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165871 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tccaaggtctttgtttctcctttc 88 ||||||||| |||||||||||||| Sbjct: 8668 tccaaggtcattgtttctcctttc 8645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,817,008 Number of Sequences: 3902068 Number of extensions: 2817008 Number of successful extensions: 41923 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41739 Number of HSP's gapped (non-prelim): 184 length of query: 248 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 226 effective length of database: 17,147,199,772 effective search space: 3875267148472 effective search space used: 3875267148472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)