ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 323 bits (163), Expect = 3e-85 Identities = 179/183 (97%), Gaps = 1/183 (0%) Strand = Plus / Minus Query: 241 aagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaagattacac 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83189 aagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaagattacat 83130 Query: 301 atatgctacatccatggtcgctgattgtttttgtggccaggttacacgaggaacatccct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83129 atatgctacatccatggtcgctgattgtttttgtggccaggttacacgaggaacatccct 83070 Query: 361 acatacacggctacatgtagctaggttgagttgtt-aaacggagaaggattaatctgagt 419 ||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 83069 acatacacggctacatgtagctaggctgagttgttaaaacggacaaggattaatctgagt 83010 Query: 420 ctg 422 ||| Sbjct: 83009 ctg 83007 Score = 230 bits (116), Expect = 3e-57 Identities = 122/124 (98%) Strand = Plus / Minus Query: 1 aaaggttccaatatttctcacgtgacccatacaaggtaccctttgatcaacagccggata 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 83261 aaaggttccaatatttctcacgtgacgcatacaaggtaccctttgatcaacagccggata 83202 Query: 61 aaactgcgtagtaagtccattcggttcagctatccatagttgatcaagctacagaacaag 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83201 aaactgcgtagcaagtccattcggttcagctatccatagttgatcaagctacagaacaag 83142 Query: 121 caaa 124 |||| Sbjct: 83141 caaa 83138 Score = 103 bits (52), Expect = 5e-19 Identities = 52/52 (100%) Strand = Plus / Minus Query: 185 aagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaa 236 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83189 aagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaa 83138 Score = 103 bits (52), Expect = 5e-19 Identities = 52/52 (100%) Strand = Plus / Minus Query: 129 aagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83189 aagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaa 83138
>gb|AF459085.1| Hordeum vulgare SNF2P (Snf2P) gene, complete cds Length = 7963 Score = 323 bits (163), Expect = 3e-85 Identities = 182/187 (97%), Gaps = 1/187 (0%) Strand = Plus / Minus Query: 237 tagtaagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaagatt 296 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 7378 tagtaagtccattcggttcatctatccatagttgatcaagctacagaacaagcaaagatt 7319 Query: 297 acacatatgctacatccatggtcgctgattgtttttgtggccaggttacacgaggaacat 356 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7318 acatatatgctacatccatggtcgctgattgtttttgtggccaggttacacgaggaacat 7259 Query: 357 ccctacatacacggctacatgtagctaggttgagttgtt-aaacggagaaggattaatct 415 ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| Sbjct: 7258 ccctacatacacggctacatgtagctaggctgagttgttaaaacggacaaggattaatct 7199 Query: 416 gagtctg 422 ||||||| Sbjct: 7198 gagtctg 7192 Score = 238 bits (120), Expect = 1e-59 Identities = 123/124 (99%) Strand = Plus / Minus Query: 1 aaaggttccaatatttctcacgtgacccatacaaggtaccctttgatcaacagccggata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7446 aaaggttccaatatttctcacgtgacccatacaaggtaccctttgatcaacagccggata 7387 Query: 61 aaactgcgtagtaagtccattcggttcagctatccatagttgatcaagctacagaacaag 120 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 7386 aaactgcgtagtaagtccattcggttcatctatccatagttgatcaagctacagaacaag 7327 Query: 121 caaa 124 |||| Sbjct: 7326 caaa 7323 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 181 tagtaagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaa 236 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 7378 tagtaagtccattcggttcatctatccatagttgatcaagctacagaacaagcaaa 7323 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 125 tagtaagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaa 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 7378 tagtaagtccattcggttcatctatccatagttgatcaagctacagaacaagcaaa 7323
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 242 bits (122), Expect = 8e-61 Identities = 170/186 (91%) Strand = Plus / Minus Query: 237 tagtaagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaagatt 296 ||||||||||||||||| |||||||||||||| ||| |||||||| |||||||||| || Sbjct: 353152 tagtaagtccattcggtccagctatccatagtcaatccagctacaggacaagcaaaggtt 353093 Query: 297 acacatatgctacatccatggtcgctgattgtttttgtggccaggttacacgaggaacat 356 ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 353092 acatatatgctacatccatggtccctgattgtttttgtggccaggttacaccaggaacat 353033 Query: 357 ccctacatacacggctacatgtagctaggttgagttgttaaacggagaaggattaatctg 416 ||||||||||| ||||||||||||||||| ||||| | |||| || ||||||||||||| Sbjct: 353032 ccctacatacatggctacatgtagctaggctgagtgttaaaacagacaaggattaatctg 352973 Query: 417 agtctg 422 |||||| Sbjct: 352972 agtctg 352967 Score = 167 bits (84), Expect = 4e-38 Identities = 114/124 (91%) Strand = Plus / Minus Query: 1 aaaggttccaatatttctcacgtgacccatacaaggtaccctttgatcaacagccggata 60 ||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| Sbjct: 353220 aaaggttccaatatttctcacatgacacatacaagataccctttgatctacagccggata 353161 Query: 61 aaactgcgtagtaagtccattcggttcagctatccatagttgatcaagctacagaacaag 120 |||||| |||||||||||||||||| |||||||||||||| ||| |||||||| ||||| Sbjct: 353160 aaactgtgtagtaagtccattcggtccagctatccatagtcaatccagctacaggacaag 353101 Query: 121 caaa 124 |||| Sbjct: 353100 caaa 353097 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 181 tagtaagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaa 236 ||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||| Sbjct: 353152 tagtaagtccattcggtccagctatccatagtcaatccagctacaggacaagcaaa 353097 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 125 tagtaagtccattcggttcagctatccatagttgatcaagctacagaacaagcaaa 180 ||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||| Sbjct: 353152 tagtaagtccattcggtccagctatccatagtcaatccagctacaggacaagcaaa 353097 Score = 58.0 bits (29), Expect = 2e-05 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 40 cctttgatcaacagccggataaaactgcgtagtaagtccattcggttcagctatcca 96 ||||| ||| ||||||||||||| ||| ||||||| | ||||||||||||||||||| Sbjct: 392002 cctttaatctacagccggataaa-ctgtgtagtaacttcattcggttcagctatcca 391947 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 181 tagtaagtccattcggttcagctatcca 208 |||||| | ||||||||||||||||||| Sbjct: 391974 tagtaacttcattcggttcagctatcca 391947 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 237 tagtaagtccattcggttcagctatcca 264 |||||| | ||||||||||||||||||| Sbjct: 391974 tagtaacttcattcggttcagctatcca 391947 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 tagtaagtccattcggttcagctatcca 152 |||||| | ||||||||||||||||||| Sbjct: 391974 tagtaacttcattcggttcagctatcca 391947
>gb|BC108546.1| Xenopus laevis cDNA clone MGC:131007 IMAGE:7979127, complete cds Length = 1525 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 agctacagaacaagcaaagat 295 ||||||||||||||||||||| Sbjct: 257 agctacagaacaagcaaagat 277
>gb|AC146038.2| Pan troglodytes BAC clone RP43-96B12 from chromosome 7, complete sequence Length = 189363 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ggtaccctttgatcaacagc 54 |||||||||||||||||||| Sbjct: 20919 ggtaccctttgatcaacagc 20938
>gb|AC006216.1|F5F19 Arabidopsis thaliana chromosome 1 BAC F5F19 sequence, complete sequence Length = 110893 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 agtccattcggttcagctat 205 |||||||||||||||||||| Sbjct: 80522 agtccattcggttcagctat 80503 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 agtccattcggttcagctat 149 |||||||||||||||||||| Sbjct: 80522 agtccattcggttcagctat 80503 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 agtccattcggttcagctat 93 |||||||||||||||||||| Sbjct: 80522 agtccattcggttcagctat 80503 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 agtccattcggttcagctat 261 |||||||||||||||||||| Sbjct: 80522 agtccattcggttcagctat 80503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,865,934 Number of Sequences: 3902068 Number of extensions: 2865934 Number of successful extensions: 48130 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48101 Number of HSP's gapped (non-prelim): 26 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
