Clone Name | rbastl27a09 |
---|---|
Clone Library Name | barley_pub |
>emb|AL133328.13| Human DNA sequence from clone RP13-21D1 on chromosome X, complete sequence Length = 169649 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Minus Query: 211 ggctgtacactcaggcaatagttgattagttg 242 ||||||||||||||| |||||||||| ||||| Sbjct: 6502 ggctgtacactcagggaatagttgatgagttg 6471
>gb|AC010737.4|AC010737 Homo sapiens BAC clone RP11-439L24 from Y, complete sequence Length = 70204 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Minus Query: 211 ggctgtacactcaggcaatagttgattagttg 242 ||||||||||||||| |||||||||| ||||| Sbjct: 9001 ggctgtacactcagggaatagttgatgagttg 8970
>gb|AC009148.11| Homo sapiens chromosome 16 clone RP11-55K13, complete sequence Length = 157518 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 21 gtattgttcaaagttttacatccatg 46 ||||| |||||||||||||||||||| Sbjct: 104417 gtattattcaaagttttacatccatg 104442
>gb|AY440486.1| Armigeres subalbatus ASAP ID: 39217 putative: mucin-like peritrophin mRNA sequence Length = 658 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 attgttcaaagttttacatc 42 |||||||||||||||||||| Sbjct: 187 attgttcaaagttttacatc 206
>gb|AY542761.1| Uncultured alpha proteobacterium clone OS015 16S ribosomal RNA gene, partial sequence Length = 657 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ttgattagttgggggtgaaa 251 |||||||||||||||||||| Sbjct: 554 ttgattagttgggggtgaaa 573
>emb|Z79639.1|CEF54E4 Caenorhabditis elegans Cosmid F54E4, complete sequence Length = 43150 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cacaaaaaatgctgagggct 214 |||||||||||||||||||| Sbjct: 38272 cacaaaaaatgctgagggct 38253
>emb|CR974467.8| Pig DNA sequence from clone CH242-235B3 on chromosome 17, complete sequence Length = 158975 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 69 acaaattcttaactggcaggtgcatcca 96 |||||||||| |||||||||||||||| Sbjct: 85679 acaaattcttttctggcaggtgcatcca 85652
>gb|AC093494.1| Homo sapiens chromosome 3 clone RP11-1004I19 map 3p, complete sequence Length = 159189 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 gggtgaaaaacacacttttt 263 |||||||||||||||||||| Sbjct: 23138 gggtgaaaaacacacttttt 23119
>gb|AC018841.4| Homo sapiens chromosome 3 clone RP11-7F24 map 3p, complete sequence Length = 198264 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 gggtgaaaaacacacttttt 263 |||||||||||||||||||| Sbjct: 197792 gggtgaaaaacacacttttt 197773
>gb|DQ300657.1| Uncultured bacterium clone HF10_G3_P1 16S ribosomal RNA gene, partial sequence Length = 923 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ttgattagttgggggtgaaa 251 |||||||||||||||||||| Sbjct: 514 ttgattagttgggggtgaaa 533
>emb|BX470163.8| Zebrafish DNA sequence from clone DKEY-27A9 in linkage group 18, complete sequence Length = 241301 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttcttaactggcaggtgcat 93 |||||||||||||||||||| Sbjct: 211977 ttcttaactggcaggtgcat 211996
>emb|BX784024.10| Zebrafish DNA sequence from clone CH211-239J19 in linkage group 18, complete sequence Length = 110791 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ttcttaactggcaggtgcat 93 |||||||||||||||||||| Sbjct: 18479 ttcttaactggcaggtgcat 18460
>gb|AC026166.5| Homo sapiens chromosome 3 clone RP11-126L4 map 3p, complete sequence Length = 163864 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 gggtgaaaaacacacttttt 263 |||||||||||||||||||| Sbjct: 83117 gggtgaaaaacacacttttt 83098 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,762,212 Number of Sequences: 3902068 Number of extensions: 2762212 Number of successful extensions: 53449 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53428 Number of HSP's gapped (non-prelim): 21 length of query: 263 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 241 effective length of database: 17,147,199,772 effective search space: 4132475145052 effective search space used: 4132475145052 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)