ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL133328.13| Human DNA sequence from clone RP13-21D1 on chro... 48 0.014
2gb|AC010737.4|AC010737 Homo sapiens BAC clone RP11-439L24 from Y... 48 0.014
3gb|AC009148.11| Homo sapiens chromosome 16 clone RP11-55K13, com... 44 0.22
4gb|AY440486.1| Armigeres subalbatus ASAP ID: 39217 putative: muc... 40 3.4
5gb|AY542761.1| Uncultured alpha proteobacterium clone OS015 16S ... 40 3.4
6emb|Z79639.1|CEF54E4 Caenorhabditis elegans Cosmid F54E4, comple... 40 3.4
7emb|CR974467.8| Pig DNA sequence from clone CH242-235B3 on chrom... 40 3.4
8gb|AC093494.1| Homo sapiens chromosome 3 clone RP11-1004I19 map ... 40 3.4
9gb|AC018841.4| Homo sapiens chromosome 3 clone RP11-7F24 map 3p,... 40 3.4
10gb|DQ300657.1| Uncultured bacterium clone HF10_G3_P1 16S ribosom... 40 3.4
11emb|BX470163.8| Zebrafish DNA sequence from clone DKEY-27A9 in l... 40 3.4
12emb|BX784024.10| Zebrafish DNA sequence from clone CH211-239J19 ... 40 3.4
13gb|AC026166.5| Homo sapiens chromosome 3 clone RP11-126L4 map 3p... 40 3.4

>emb|AL133328.13| Human DNA sequence from clone RP13-21D1 on chromosome X, complete
            sequence
          Length = 169649

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 211  ggctgtacactcaggcaatagttgattagttg 242
            ||||||||||||||| |||||||||| |||||
Sbjct: 6502 ggctgtacactcagggaatagttgatgagttg 6471



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>gb|AC010737.4|AC010737 Homo sapiens BAC clone RP11-439L24 from Y, complete sequence
          Length = 70204

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 211  ggctgtacactcaggcaatagttgattagttg 242
            ||||||||||||||| |||||||||| |||||
Sbjct: 9001 ggctgtacactcagggaatagttgatgagttg 8970



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>gb|AC009148.11| Homo sapiens chromosome 16 clone RP11-55K13, complete sequence
          Length = 157518

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 21     gtattgttcaaagttttacatccatg 46
              ||||| ||||||||||||||||||||
Sbjct: 104417 gtattattcaaagttttacatccatg 104442



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>gb|AY440486.1| Armigeres subalbatus ASAP ID: 39217 putative: mucin-like
           peritrophin mRNA sequence
          Length = 658

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 23  attgttcaaagttttacatc 42
           ||||||||||||||||||||
Sbjct: 187 attgttcaaagttttacatc 206



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>gb|AY542761.1| Uncultured alpha proteobacterium clone OS015 16S ribosomal RNA
           gene, partial sequence
          Length = 657

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 232 ttgattagttgggggtgaaa 251
           ||||||||||||||||||||
Sbjct: 554 ttgattagttgggggtgaaa 573



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>emb|Z79639.1|CEF54E4 Caenorhabditis elegans Cosmid F54E4, complete sequence
          Length = 43150

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   cacaaaaaatgctgagggct 214
             ||||||||||||||||||||
Sbjct: 38272 cacaaaaaatgctgagggct 38253



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>emb|CR974467.8| Pig DNA sequence from clone CH242-235B3 on chromosome 17, complete
             sequence
          Length = 158975

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 69    acaaattcttaactggcaggtgcatcca 96
             ||||||||||  ||||||||||||||||
Sbjct: 85679 acaaattcttttctggcaggtgcatcca 85652



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>gb|AC093494.1| Homo sapiens chromosome 3 clone RP11-1004I19 map 3p, complete sequence
          Length = 159189

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   gggtgaaaaacacacttttt 263
             ||||||||||||||||||||
Sbjct: 23138 gggtgaaaaacacacttttt 23119



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>gb|AC018841.4| Homo sapiens chromosome 3 clone RP11-7F24 map 3p, complete sequence
          Length = 198264

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    gggtgaaaaacacacttttt 263
              ||||||||||||||||||||
Sbjct: 197792 gggtgaaaaacacacttttt 197773



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>gb|DQ300657.1| Uncultured bacterium clone HF10_G3_P1 16S ribosomal RNA gene,
           partial sequence
          Length = 923

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 232 ttgattagttgggggtgaaa 251
           ||||||||||||||||||||
Sbjct: 514 ttgattagttgggggtgaaa 533



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>emb|BX470163.8| Zebrafish DNA sequence from clone DKEY-27A9 in linkage group 18, complete
              sequence
          Length = 241301

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     ttcttaactggcaggtgcat 93
              ||||||||||||||||||||
Sbjct: 211977 ttcttaactggcaggtgcat 211996



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>emb|BX784024.10| Zebrafish DNA sequence from clone CH211-239J19 in linkage group 18,
             complete sequence
          Length = 110791

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ttcttaactggcaggtgcat 93
             ||||||||||||||||||||
Sbjct: 18479 ttcttaactggcaggtgcat 18460



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>gb|AC026166.5| Homo sapiens chromosome 3 clone RP11-126L4 map 3p, complete sequence
          Length = 163864

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   gggtgaaaaacacacttttt 263
             ||||||||||||||||||||
Sbjct: 83117 gggtgaaaaacacacttttt 83098


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,762,212
Number of Sequences: 3902068
Number of extensions: 2762212
Number of successful extensions: 53449
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53428
Number of HSP's gapped (non-prelim): 21
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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