>emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in linkage group 3, complete
              sequence
          Length = 165569

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     acaggcgatacatcaaaatca 30
              |||||||||||||||||||||
Sbjct: 108976 acaggcgatacatcaaaatca 108956

>gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, complete sequence
          Length = 208489

 Score = 40.1 bits (20), Expect = 0.58
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    aattccaattggccagtatt 57
             ||||||||||||||||||||
Sbjct: 67319 aattccaattggccagtatt 67338

>gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome 12, complete sequence
          Length = 211561

 Score = 40.1 bits (20), Expect = 0.58
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aattccaattggccagtatt 57
             ||||||||||||||||||||
Sbjct: 35272 aattccaattggccagtatt 35253

>gb|AC126007.16| Medicago truncatula clone mth2-11o4, complete sequence
          Length = 106747

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 19    acatcaaaatcatcgttgcaattccaa 45
             |||||||||||||| |||||| |||||
Sbjct: 11400 acatcaaaatcatcattgcaactccaa 11426

>emb|AL935257.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 6/11
          Length = 302050

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     gcaattccaattggccagt 54
              |||||||||||||||||||
Sbjct: 211052 gcaattccaattggccagt 211070

>ref|XM_478219.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2354

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 32   cgttgcaattccaattgg 49
            ||||||||||||||||||
Sbjct: 1604 cgttgcaattccaattgg 1587

>emb|X64516.1|SCTSF3G S.cerevisiae gene TSF3
          Length = 5674

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 14   gcgatacatcaaaatcat 31
            ||||||||||||||||||
Sbjct: 3178 gcgatacatcaaaatcat 3195

>emb|Z14092.1|CER107 Caenorhabditis elegans Cosmid R107, complete sequence
          Length = 40970

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 24   aaaatcatcgttgcaatt 41
            ||||||||||||||||||
Sbjct: 9816 aaaatcatcgttgcaatt 9799

>gb|AC145023.4| Medicago truncatula clone mth2-30j24, complete sequence
          Length = 90381

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 34    ttgcaattccaattggcc 51
             ||||||||||||||||||
Sbjct: 41288 ttgcaattccaattggcc 41305

>gb|AC148227.14| Medicago truncatula clone mth2-8f11, complete sequence
          Length = 116139

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 34    ttgcaattccaattggcc 51
             ||||||||||||||||||
Sbjct: 63290 ttgcaattccaattggcc 63307

>emb|Z69381.1|SCCXIV39K S.cerevisiae 38,855 bp segment of chromosome XIV
          Length = 38855

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    gcgatacatcaaaatcat 31
             ||||||||||||||||||
Sbjct: 17559 gcgatacatcaaaatcat 17576

>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     aaaatcatcgttgcaattccaa 45
              ||||||||| ||||||||||||
Sbjct: 147096 aaaatcatcattgcaattccaa 147117

>emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; segment 2/5
          Length = 338100

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 19     acatcaaaatcatcgttg 36
              ||||||||||||||||||
Sbjct: 105029 acatcaaaatcatcgttg 105012

>emb|AJ748322.1| Sulfolobus islandicus plasmid pARN3
          Length = 26200

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    tcgttgcaattccaattg 48
             ||||||||||||||||||
Sbjct: 11624 tcgttgcaattccaattg 11641

>emb|BX571885.7| Mouse DNA sequence from clone RP23-17O21 on chromosome 4 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (Gapd)
             pseudogene, a novel gene and the 3' end of a novel gene,
             complete sequence
          Length = 218922

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     caacaagacaggcgatac 20
             ||||||||||||||||||
Sbjct: 67440 caacaagacaggcgatac 67457

>emb|CR589876.7| Zebrafish DNA sequence from clone DKEY-53I3 in linkage group 23, complete
              sequence
          Length = 176042

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 37     caattccaattggccagt 54
              ||||||||||||||||||
Sbjct: 165544 caattccaattggccagt 165561

>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     aaaatcatcgttgcaattccaa 45
              ||||||||| ||||||||||||
Sbjct: 170148 aaaatcatcattgcaattccaa 170169

>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     aaaatcatcgttgcaattccaa 45
              ||||||||| ||||||||||||
Sbjct: 156183 aaaatcatcattgcaattccaa 156204

>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     aaaatcatcgttgcaattccaa 45
              ||||||||| ||||||||||||
Sbjct: 122270 aaaatcatcattgcaattccaa 122291

>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     aaaatcatcgttgcaattccaa 45
              ||||||||| ||||||||||||
Sbjct: 176939 aaaatcatcattgcaattccaa 176960

>emb|BX537260.8| Zebrafish DNA sequence from clone DKEY-234J21 in linkage group 1,
             complete sequence
          Length = 150038

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 10    acaggcgatacatcaaaatcat 31
             ||||||||||||||| ||||||
Sbjct: 95553 acaggcgatacatcacaatcat 95574

>gb|AC096573.1| Homo sapiens BAC clone RP11-458F24 from 2, complete sequence
          Length = 96987

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 35   tgcaattccaattggcca 52
            ||||||||||||||||||
Sbjct: 4277 tgcaattccaattggcca 4294

>gb|AC069081.4| Staphylococcus aureus clone sabac-47, complete sequence
          Length = 43986

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 24   aaaatcatcgttgcaattccaa 45
            ||||||||| ||||||||||||
Sbjct: 1542 aaaatcatcattgcaattccaa 1563

>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     aaaatcatcgttgcaattccaa 45
              ||||||||| ||||||||||||
Sbjct: 148396 aaaatcatcattgcaattccaa 148417

>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     aaaatcatcgttgcaattccaa 45
              ||||||||| ||||||||||||
Sbjct: 170187 aaaatcatcattgcaattccaa 170208

>dbj|AK068275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013139F24, full
            insert sequence
          Length = 2354

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 32   cgttgcaattccaattgg 49
            ||||||||||||||||||
Sbjct: 1604 cgttgcaattccaattgg 1587

>emb|Z71512.1|SCYNL236W S.cerevisiae chromosome XIV reading frame ORF YNL236w
          Length = 3665

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 14   gcgatacatcaaaatcat 31
            ||||||||||||||||||
Sbjct: 1498 gcgatacatcaaaatcat 1515

>gb|U81973.1|SAU81973 Staphylococcus aureus capsule gene cluster Cap5A through Cap5P genes,
            complete cds
          Length = 18131

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 24   aaaatcatcgttgcaattccaa 45
            ||||||||| ||||||||||||
Sbjct: 3154 aaaatcatcattgcaattccaa 3175

>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     aaaatcatcgttgcaattccaa 45
              ||||||||| ||||||||||||
Sbjct: 115131 aaaatcatcattgcaattccaa 115152

>gb|U73374.1|SAU73374 Staphylococcus aureus type 8 capsule genes, cap8A, cap8B, cap8C,
            cap8D, cap8E, cap8F, cap8G, cap8H, cap8I, cap8J, cap8K,
            cap8L, cap8M, cap8N, cap8O, cap8P, complete cds
          Length = 17539

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 24   aaaatcatcgttgcaattccaa 45
            ||||||||| ||||||||||||
Sbjct: 3224 aaaatcatcattgcaattccaa 3245

>emb|AL731725.8| Mouse DNA sequence from clone RP23-146P19 on chromosome X, complete
              sequence
          Length = 213743

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 34     ttgcaattccaattggcc 51
              ||||||||||||||||||
Sbjct: 181082 ttgcaattccaattggcc 181099

>gb|M93050.1|YSCSIN4TSF Saccharomyces cerevisiae global transcriptional regulator (SIN4)
            gene, complete cds
          Length = 4414

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 14   gcgatacatcaaaatcat 31
            ||||||||||||||||||
Sbjct: 1648 gcgatacatcaaaatcat 1665

>dbj|D12918.1|YSCBEL2 Yeast BEL2 gene for ORF, complete cds
          Length = 4028

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 14   gcgatacatcaaaatcat 31
            ||||||||||||||||||
Sbjct: 1648 gcgatacatcaaaatcat 1665


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 408,607
Number of Sequences: 3902068
Number of extensions: 408607
Number of successful extensions: 24849
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24748
Number of HSP's gapped (non-prelim): 101
length of query: 62
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 41
effective length of database: 17,151,101,840
effective search space: 703195175440
effective search space used: 703195175440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)