ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1) 32 0.79
2YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c... 30 2.3
3CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsB... 28 8.7

>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)|
          Length = 272

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = -1

Query: 318 VEVIEASNVVMQMKFWALVDIVIFLLFSARVLLFM*HFKVKFG--------SWDDTA*GT 163
           VE++ A NV+ Q++      IV   LF  ++ +F   ++V+ G        S DDT    
Sbjct: 147 VEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFGWIYEVESGEVLQISRTSSDDTGIDE 206

Query: 162 CAVRNPGHDIKELADHSWHPYT 97
           C VR PG   K +      P T
Sbjct: 207 CPVRLPGSQEKAILGRCVVPLT 228



to top

>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 6   KKVHVEYENFNKLQSTNILLKSLVAEVHFITYKDATSDLPVL*C 137
           K++   +  F K++   IL K  +A VHF+  +DA   +  L C
Sbjct: 313 KEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSC 356



to top

>CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsBeta) (Fatty|
           acid beta-hydroxylase)
          Length = 417

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 152 LTAQVPHAVSSQEPNFTLK---CYINNRTLALNKRKITMSTRAQNFICITTLEAS 307
           +  Q+PH  S       LK    +I NRT   N          +NFIC+T  EA+
Sbjct: 1   MNEQIPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAA 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,963,717
Number of Sequences: 219361
Number of extensions: 1107149
Number of successful extensions: 2130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2130
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top