ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYH13_HUMAN (Q9UKX3) Myosin-13 (Myosin heavy chain, skeletal mus... 28 8.2
2CX001_HUMAN (O96002) Protein CXorf1 28 8.2

>MYH13_HUMAN (Q9UKX3) Myosin-13 (Myosin heavy chain, skeletal muscle,|
           extraocular) (MyHC-eo)
          Length = 1938

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 329 SYQSFVNVRSNKTEATIVLWLISK*PFDF 243
           SY  F  + SNK    I L LIS  PFDF
Sbjct: 284 SYHIFYQIMSNKKPELIDLLLISTNPFDF 312



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>CX001_HUMAN (O96002) Protein CXorf1|
          Length = 111

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 265 SVSNPLISFCWCKCESAVSCIIRWYLFILVFCCY*IFFLF 146
           S+++PL  FC+     A+S I  + +FI +F  + + F F
Sbjct: 33  SLASPLTIFCFALSAQALSTIFYFRIFIFIFHSWILLFHF 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,030,130
Number of Sequences: 219361
Number of extensions: 1048934
Number of successful extensions: 2073
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2072
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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