ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
2dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
5dbj|AK064865.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.089
6gb|AC155987.2| Xenopus tropicalis clone ISB1-279F18, complete se... 42 1.4
7gb|AC151332.2| Xenopus tropicalis clone ISB-315C6, complete sequ... 42 1.4
8gb|AY134615.1|AY134614S2 Mus musculus NOD/Lt ETS1 proto-oncogene... 40 5.5
9gb|AY134613.1|AY134612S2 Mus musculus C57BL/6 ETS1 proto-oncogen... 40 5.5
10gb|AY134611.1|AY134610S2 Mus musculus BALB/c ETS1 proto-oncogene... 40 5.5
11gb|AC150480.3| Rhinolophus ferrumequinum clone VMRC7-380O7, comp... 40 5.5
12emb|BX897678.1| Neurospora crassa DNA linkage group VI BAC clone... 40 5.5
13gb|AC144544.4| Homo sapiens 3 BAC RP13-687A4 (Roswell Park Cance... 40 5.5
14gb|AC099685.2| Homo sapiens chromosome 8, clone RP11-87N16, comp... 40 5.5
15gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 40 5.5
16gb|AC096570.1| Homo sapiens BAC clone RP11-368O18 from 2, comple... 40 5.5
17gb|AC005180.3| Homo sapiens chromosome 17, clone CTC-296K1, comp... 40 5.5
18gb|AC154856.2| Mus musculus BAC clone RP23-20C2 from 13, complet... 40 5.5
19gb|AC097264.4| Pan troglodytes BAC RP43-175I2 (Roswell Park Canc... 40 5.5
20emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-7... 40 5.5
21gb|AC139108.3| Mus musculus BAC clone RP23-93M1 from 9, complete... 40 5.5

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                         
Query: 107      gcatacttacagaaaggggaagaatgcacactccactctgc 147
                ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 33398969 gcatacttacagaaaggggaagaatgcacactccaatctgc 33398929



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 112      cttacagaaaggggaagaatgcacactccactctg 146
                ||||||||||||||||| |||||||||||| ||||
Sbjct: 27686523 cttacagaaaggggaaggatgcacactccaatctg 27686557



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 112      cttacagaaaggggaagaatgcacactccactctgc 147
                |||||||||||||||||||||| |||| || |||||
Sbjct: 27686488 cttacagaaaggggaagaatgcccacttcaatctgc 27686523



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>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1316_E06
          Length = 110197

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                      
Query: 107   gcatacttacagaaaggggaagaatgcacactccactctgc 147
             ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 29588 gcatacttacagaaaggggaagaatgcacactccaatctgc 29548



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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0135D07
          Length = 170587

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 112    cttacagaaaggggaagaatgcacactccactctg 146
              ||||||||||||||||| |||||||||||| ||||
Sbjct: 166192 cttacagaaaggggaaggatgcacactccaatctg 166226



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 112    cttacagaaaggggaagaatgcacactccactctgc 147
              |||||||||||||||||||||| |||| || |||||
Sbjct: 166157 cttacagaaaggggaagaatgcccacttcaatctgc 166192



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>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0005A04
          Length = 140723

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 112   cttacagaaaggggaagaatgcacactccactctg 146
             ||||||||||||||||| |||||||||||| ||||
Sbjct: 72389 cttacagaaaggggaaggatgcacactccaatctg 72423



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 112   cttacagaaaggggaagaatgcacactccactctgc 147
             |||||||||||||||||||||| |||| || |||||
Sbjct: 72354 cttacagaaaggggaagaatgcccacttcaatctgc 72389



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>dbj|AK064865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I09, full
            insert sequence
          Length = 3363

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 112  cttacagaaaggggaagaatgcacactccactctg 146
            |||||| |||||||||| |||||||||||| ||||
Sbjct: 3266 cttacaaaaaggggaaggatgcacactccaatctg 3232



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>gb|AC155987.2| Xenopus tropicalis clone ISB1-279F18, complete sequence
          Length = 23025

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     atccatacattcaactcagca 28
             |||||||||||||||||||||
Sbjct: 20892 atccatacattcaactcagca 20872



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>gb|AC151332.2| Xenopus tropicalis clone ISB-315C6, complete sequence
          Length = 97419

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     atccatacattcaactcagca 28
             |||||||||||||||||||||
Sbjct: 92211 atccatacattcaactcagca 92231



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>gb|AY134615.1|AY134614S2 Mus musculus NOD/Lt ETS1 proto-oncogene (Ets1) gene, exons 3
           through 9 and complete cds
          Length = 28698

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 acttacagaaaggggaagaa 130
           ||||||||||||||||||||
Sbjct: 668 acttacagaaaggggaagaa 649



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>gb|AY134613.1|AY134612S2 Mus musculus C57BL/6 ETS1 proto-oncogene (Ets1) gene, exons 3
           through 9 and complete cds
          Length = 28718

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 acttacagaaaggggaagaa 130
           ||||||||||||||||||||
Sbjct: 666 acttacagaaaggggaagaa 647



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>gb|AY134611.1|AY134610S2 Mus musculus BALB/c ETS1 proto-oncogene (Ets1) gene, exons 3
           through 9 and complete cds
          Length = 28698

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 acttacagaaaggggaagaa 130
           ||||||||||||||||||||
Sbjct: 668 acttacagaaaggggaagaa 649



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>gb|AC150480.3| Rhinolophus ferrumequinum clone VMRC7-380O7, complete sequence
          Length = 171158

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   caactaaatgatacaacaat 169
             ||||||||||||||||||||
Sbjct: 46414 caactaaatgatacaacaat 46433



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>emb|BX897678.1| Neurospora crassa DNA linkage group VI BAC clone B10H18
          Length = 74165

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   agtatcatgacaacggtccg 384
             ||||||||||||||||||||
Sbjct: 10728 agtatcatgacaacggtccg 10747



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>gb|AC144544.4| Homo sapiens 3 BAC RP13-687A4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 15113

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  tggtgatttaattcatttca 190
            ||||||||||||||||||||
Sbjct: 3767 tggtgatttaattcatttca 3786



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>gb|AC099685.2| Homo sapiens chromosome 8, clone RP11-87N16, complete sequence
          Length = 182413

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   cccccaaataatctctattt 269
             ||||||||||||||||||||
Sbjct: 55097 cccccaaataatctctattt 55078



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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    caactaaatgatacaacaat 169
              ||||||||||||||||||||
Sbjct: 460028 caactaaatgatacaacaat 460047



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>gb|AC096570.1| Homo sapiens BAC clone RP11-368O18 from 2, complete sequence
          Length = 207972

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    tggtgatttaattcatttca 190
              ||||||||||||||||||||
Sbjct: 148113 tggtgatttaattcatttca 148094



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>gb|AC005180.3| Homo sapiens chromosome 17, clone CTC-296K1, complete sequence
          Length = 126610

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gaaaggggaagaatgcacac 137
             ||||||||||||||||||||
Sbjct: 22019 gaaaggggaagaatgcacac 22000



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>gb|AC154856.2| Mus musculus BAC clone RP23-20C2 from 13, complete sequence
          Length = 248953

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   cagtatgtgttaacttaaca 323
             ||||||||||||||||||||
Sbjct: 58097 cagtatgtgttaacttaaca 58078



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>gb|AC097264.4| Pan troglodytes BAC RP43-175I2 (Roswell Park Cancer Institute Male
            Chimpanzee BAC Library) complete sequence
          Length = 173720

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gaaaggggaagaatgcacac 137
            ||||||||||||||||||||
Sbjct: 8077 gaaaggggaagaatgcacac 8096



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>emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-764E10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173106

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    aacaatatggtgatttaatt 183
              ||||||||||||||||||||
Sbjct: 131615 aacaatatggtgatttaatt 131634



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>gb|AC139108.3| Mus musculus BAC clone RP23-93M1 from 9, complete sequence
          Length = 269739

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   acttacagaaaggggaagaa 130
             ||||||||||||||||||||
Sbjct: 94288 acttacagaaaggggaagaa 94307


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,341,710
Number of Sequences: 3902068
Number of extensions: 3341710
Number of successful extensions: 57915
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57848
Number of HSP's gapped (non-prelim): 67
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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