Clone Name | rbastl27a02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 4e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 107 gcatacttacagaaaggggaagaatgcacactccactctgc 147 ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 33398969 gcatacttacagaaaggggaagaatgcacactccaatctgc 33398929 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 112 cttacagaaaggggaagaatgcacactccactctg 146 ||||||||||||||||| |||||||||||| |||| Sbjct: 27686523 cttacagaaaggggaaggatgcacactccaatctg 27686557 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 112 cttacagaaaggggaagaatgcacactccactctgc 147 |||||||||||||||||||||| |||| || ||||| Sbjct: 27686488 cttacagaaaggggaagaatgcccacttcaatctgc 27686523
>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1316_E06 Length = 110197 Score = 73.8 bits (37), Expect = 4e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 107 gcatacttacagaaaggggaagaatgcacactccactctgc 147 ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 29588 gcatacttacagaaaggggaagaatgcacactccaatctgc 29548
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 112 cttacagaaaggggaagaatgcacactccactctg 146 ||||||||||||||||| |||||||||||| |||| Sbjct: 166192 cttacagaaaggggaaggatgcacactccaatctg 166226 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 112 cttacagaaaggggaagaatgcacactccactctgc 147 |||||||||||||||||||||| |||| || ||||| Sbjct: 166157 cttacagaaaggggaagaatgcccacttcaatctgc 166192
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 112 cttacagaaaggggaagaatgcacactccactctg 146 ||||||||||||||||| |||||||||||| |||| Sbjct: 72389 cttacagaaaggggaaggatgcacactccaatctg 72423 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 112 cttacagaaaggggaagaatgcacactccactctgc 147 |||||||||||||||||||||| |||| || ||||| Sbjct: 72354 cttacagaaaggggaagaatgcccacttcaatctgc 72389
>dbj|AK064865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I09, full insert sequence Length = 3363 Score = 46.1 bits (23), Expect = 0.089 Identities = 32/35 (91%) Strand = Plus / Minus Query: 112 cttacagaaaggggaagaatgcacactccactctg 146 |||||| |||||||||| |||||||||||| |||| Sbjct: 3266 cttacaaaaaggggaaggatgcacactccaatctg 3232
>gb|AC155987.2| Xenopus tropicalis clone ISB1-279F18, complete sequence Length = 23025 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 atccatacattcaactcagca 28 ||||||||||||||||||||| Sbjct: 20892 atccatacattcaactcagca 20872
>gb|AC151332.2| Xenopus tropicalis clone ISB-315C6, complete sequence Length = 97419 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 atccatacattcaactcagca 28 ||||||||||||||||||||| Sbjct: 92211 atccatacattcaactcagca 92231
>gb|AY134615.1|AY134614S2 Mus musculus NOD/Lt ETS1 proto-oncogene (Ets1) gene, exons 3 through 9 and complete cds Length = 28698 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 acttacagaaaggggaagaa 130 |||||||||||||||||||| Sbjct: 668 acttacagaaaggggaagaa 649
>gb|AY134613.1|AY134612S2 Mus musculus C57BL/6 ETS1 proto-oncogene (Ets1) gene, exons 3 through 9 and complete cds Length = 28718 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 acttacagaaaggggaagaa 130 |||||||||||||||||||| Sbjct: 666 acttacagaaaggggaagaa 647
>gb|AY134611.1|AY134610S2 Mus musculus BALB/c ETS1 proto-oncogene (Ets1) gene, exons 3 through 9 and complete cds Length = 28698 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 acttacagaaaggggaagaa 130 |||||||||||||||||||| Sbjct: 668 acttacagaaaggggaagaa 649
>gb|AC150480.3| Rhinolophus ferrumequinum clone VMRC7-380O7, complete sequence Length = 171158 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caactaaatgatacaacaat 169 |||||||||||||||||||| Sbjct: 46414 caactaaatgatacaacaat 46433
>emb|BX897678.1| Neurospora crassa DNA linkage group VI BAC clone B10H18 Length = 74165 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 agtatcatgacaacggtccg 384 |||||||||||||||||||| Sbjct: 10728 agtatcatgacaacggtccg 10747
>gb|AC144544.4| Homo sapiens 3 BAC RP13-687A4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 15113 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tggtgatttaattcatttca 190 |||||||||||||||||||| Sbjct: 3767 tggtgatttaattcatttca 3786
>gb|AC099685.2| Homo sapiens chromosome 8, clone RP11-87N16, complete sequence Length = 182413 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cccccaaataatctctattt 269 |||||||||||||||||||| Sbjct: 55097 cccccaaataatctctattt 55078
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caactaaatgatacaacaat 169 |||||||||||||||||||| Sbjct: 460028 caactaaatgatacaacaat 460047
>gb|AC096570.1| Homo sapiens BAC clone RP11-368O18 from 2, complete sequence Length = 207972 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tggtgatttaattcatttca 190 |||||||||||||||||||| Sbjct: 148113 tggtgatttaattcatttca 148094
>gb|AC005180.3| Homo sapiens chromosome 17, clone CTC-296K1, complete sequence Length = 126610 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gaaaggggaagaatgcacac 137 |||||||||||||||||||| Sbjct: 22019 gaaaggggaagaatgcacac 22000
>gb|AC154856.2| Mus musculus BAC clone RP23-20C2 from 13, complete sequence Length = 248953 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagtatgtgttaacttaaca 323 |||||||||||||||||||| Sbjct: 58097 cagtatgtgttaacttaaca 58078
>gb|AC097264.4| Pan troglodytes BAC RP43-175I2 (Roswell Park Cancer Institute Male Chimpanzee BAC Library) complete sequence Length = 173720 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gaaaggggaagaatgcacac 137 |||||||||||||||||||| Sbjct: 8077 gaaaggggaagaatgcacac 8096
>emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-764E10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173106 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aacaatatggtgatttaatt 183 |||||||||||||||||||| Sbjct: 131615 aacaatatggtgatttaatt 131634
>gb|AC139108.3| Mus musculus BAC clone RP23-93M1 from 9, complete sequence Length = 269739 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acttacagaaaggggaagaa 130 |||||||||||||||||||| Sbjct: 94288 acttacagaaaggggaagaa 94307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,341,710 Number of Sequences: 3902068 Number of extensions: 3341710 Number of successful extensions: 57915 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57848 Number of HSP's gapped (non-prelim): 67 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)