ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXP9_STRR6 (P0A4D8) Probable ATP-dependent RNA helicase exp9 (EC... 30 1.4
2EXP9_STRPN (P0A4D7) Probable ATP-dependent RNA helicase exp9 (EC... 30 1.4
3ERB1_HUMAN (P60509) HERV-R(b)_3p24.3 provirus ancestral Env poly... 28 4.2
4PGM_ASPOR (P57749) Phosphoglucomutase (EC 5.4.2.2) (Glucose phos... 27 9.3
5AT221_EMENI (Q5AW93) Autophagy-related protein 22-1 27 9.3
6O51H1_HUMAN (Q8NH63) Olfactory receptor 51H1 27 9.3
7YCF2_ADICA (Q85B60) Protein ycf2 27 9.3

>EXP9_STRR6 (P0A4D8) Probable ATP-dependent RNA helicase exp9 (EC 3.6.1.-)|
           (Exported protein 9)
          Length = 524

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 197 LDKNPSVFIYNQKIPSNPLRYLH*GGRYSRAPMIRSAVDAALPHGNGLLGI 349
           LD +    +YN  IP +P  Y+H  GR  RA     ++    P+  G L I
Sbjct: 303 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353



to top

>EXP9_STRPN (P0A4D7) Probable ATP-dependent RNA helicase exp9 (EC 3.6.1.-)|
           (Exported protein 9)
          Length = 524

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 197 LDKNPSVFIYNQKIPSNPLRYLH*GGRYSRAPMIRSAVDAALPHGNGLLGI 349
           LD +    +YN  IP +P  Y+H  GR  RA     ++    P+  G L I
Sbjct: 303 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353



to top

>ERB1_HUMAN (P60509) HERV-R(b)_3p24.3 provirus ancestral Env polyprotein|
           precursor (Envelope polyprotein) (HERV-R(b) Env protein)
           [Includes: Surface protein domain (SU); Transmembrane
           protein domain (TM)]
          Length = 514

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -3

Query: 273 PP*CKYRRGL----DGIFWL*MKTEGFLSKLLPLC*SPHAAENHCLRN 142
           P   +YR G     DG  WL   T+G LS++ PLC       NH L N
Sbjct: 180 PQNTQYRNGFLQIWDGFIWL-TATKGHLSQIAPLC---WEQRNHSLDN 223



to top

>PGM_ASPOR (P57749) Phosphoglucomutase (EC 5.4.2.2) (Glucose phosphomutase)|
           (PGM)
          Length = 555

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 298 DHRRSGVSAPLV*IPEGVRRDFLVVDEDGRIF 203
           ++  S +++ L+ IPEG +  FLV+  DGR +
Sbjct: 32  NYSESFITSILLSIPEGAKDAFLVIGGDGRYY 63



to top

>AT221_EMENI (Q5AW93) Autophagy-related protein 22-1|
          Length = 580

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 329 HGAVRRQLLIGSSALGSIC 273
           HG+ R+ LL+  +A+GSIC
Sbjct: 129 HGSYRKTLLVSFAAIGSIC 147



to top

>O51H1_HUMAN (Q8NH63) Olfactory receptor 51H1|
          Length = 302

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 182 VSRPMPLRTTVYETCSVHCDFFLLFFAPICGTCSLLLRVYHVRIVFIH 39
           VSR   L+T    TC  H    LLF+ P  G  S++ R +      +H
Sbjct: 231 VSRGERLKTL--STCLSHMSTVLLFYVPFMGAASMIHRFWEHLSPVVH 276



to top

>YCF2_ADICA (Q85B60) Protein ycf2|
          Length = 2104

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 161  RTTVYETCSVHCDFFLLFFAPICGT--CSLLLRVYHVRIVFIHYDTNY 24
            R ++ E  S+  D+  LFF P      C L+ + Y   ++ I YD+N+
Sbjct: 1051 RDSIGENWSLLGDYIPLFFTPTWWRYFCDLITKAYPEIVLKISYDSNH 1098


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,254,346
Number of Sequences: 219361
Number of extensions: 1105009
Number of successful extensions: 2426
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2426
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top