ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MIAA_HELPY (O25961) tRNA delta(2)-isopentenylpyrophosphate trans... 30 1.4
2MIAA_HELPJ (Q9ZJJ7) tRNA delta(2)-isopentenylpyrophosphate trans... 30 1.8
3MTR1B_MOUSE (Q8CIQ6) Melatonin receptor type 1B (Mel-1B-R) (Mel1... 29 3.1
4MPP9_HUMAN (Q99550) M-phase phosphoprotein 9 28 4.0
5GPR82_HUMAN (Q96P67) Probable G-protein coupled receptor 82 28 6.9

>MIAA_HELPY (O25961) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 311

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 190 LQILYATTTPPMRYVQPNDNKP 255
           L+I YAT TPP  Y + N  KP
Sbjct: 170 LEIFYATCTPPSEYFKANPKKP 191



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>MIAA_HELPJ (Q9ZJJ7) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 312

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 190 LQILYATTTPPMRYVQPNDNKP 255
           L+I YAT TPP  Y + N  KP
Sbjct: 170 LEIFYATHTPPSEYFKANPKKP 191



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>MTR1B_MOUSE (Q8CIQ6) Melatonin receptor type 1B (Mel-1B-R) (Mel1b melatonin|
           receptor)
          Length = 364

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 27  CIVHSTTIHVTASHQTKPIY 86
           CI HSTT H   SH   PIY
Sbjct: 141 CICHSTTYHRVCSHWYTPIY 160



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>MPP9_HUMAN (Q99550) M-phase phosphoprotein 9|
          Length = 692

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 11  QLDKEMYCSFNHNTCHRITPNQANIFCTG*ISYKGLITQRIPYSIF 148
           Q++ E   S  HN+   + P++AN   T  +S +  +     YSIF
Sbjct: 440 QVEHENMLSLRHNSRIHVRPSRANTLATSDVSRRKWLIPGAEYSIF 485



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>GPR82_HUMAN (Q96P67) Probable G-protein coupled receptor 82|
          Length = 336

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 70  KPSQYILHRIDKLQRVNY---TKNTLFYILNTSCDSQGTSPPFLQILYATT 213
           KP  Y+LH+ D  Q++NY   TKN    IL     ++ ++ P + +L   T
Sbjct: 269 KPIFYVLHQRDNCQQLNYLIETKN----ILTCLASARSSTDPIIFLLLDKT 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,193,196
Number of Sequences: 219361
Number of extensions: 1143840
Number of successful extensions: 2439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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