>OPLA_RAT (P97608) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)|
            (Pyroglutamase) (5-OPase)
          Length = 1288

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 35/54 (64%), Positives = 40/54 (74%)
 Frame = -3

Query: 303  PRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFGSP 142
            P GL GGE GARG N L+RKDGR V LGGK +VTV  G+V  + TPGGGG+G P
Sbjct: 1203 PYGLHGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDVFCLHTPGGGGYGDP 1256

>OPLA_HUMAN (O14841) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)|
            (Pyroglutamase) (5-OPase)
          Length = 1288

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = -3

Query: 303  PRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFGSP 142
            P GL GGE GARG N L+RK+GR V LGGK +VTV  G+V  + TPGGGG+G P
Sbjct: 1203 PYGLHGGEPGARGLNLLIRKNGRTVNLGGKTSVTVYPGDVFCLHTPGGGGYGDP 1256

>OPLA_BOVIN (Q75WB5) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)|
            (Pyroglutamase) (5-OPase)
          Length = 1288

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 34/54 (62%), Positives = 39/54 (72%)
 Frame = -3

Query: 303  PRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFGSP 142
            P GL GGE GARG N L+RKDGR V LGGK +V V  G+V  + TPGGGG+G P
Sbjct: 1203 PYGLMGGEPGARGLNLLIRKDGRTVNLGGKTSVPVYPGDVFCLHTPGGGGYGDP 1256

>OPLA_MOUSE (Q8K010) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)|
            (Pyroglutamase) (5-OPase)
          Length = 1288

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 33/54 (61%), Positives = 38/54 (70%)
 Frame = -3

Query: 303  PRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFGSP 142
            P GL GGE G RG N L+RKDGR V LGGK +VTV  G+   + TPGGGG+G P
Sbjct: 1203 PYGLHGGEPGTRGLNLLIRKDGRTVNLGGKTSVTVYPGDAFCLHTPGGGGYGDP 1256

>Y963_METJA (Q58373) Hypothetical protein MJ0963|
          Length = 563

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 25/55 (45%), Positives = 43/55 (78%)
 Frame = -3

Query: 306 APRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFGSP 142
           +P G+  G +GA G +Y++ KDG+++ L GK+T+ ++ G++++I TPGGGG+GSP
Sbjct: 460 SPWGVNNGYSGACGEHYVI-KDGKKIPLSGKDTLYLSCGDIVEINTPGGGGYGSP 513

>YKV5_YEAST (P28273) Hypothetical 140.4 kDa protein in URA1-DOA1 intergenic|
            region
          Length = 1286

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = -3

Query: 312  VHAPRGLKGGENGARGANYLVRKD-GRRVYLGGKNTVTVNAGEVLQILTPGGGGFG 148
            V  P G+KGG++G+RG N  VR   G  + +GGKNT+    G+   I TPGGGGFG
Sbjct: 1227 VIGPHGIKGGQDGSRGENLWVRHSTGALINVGGKNTIYAQPGDRFIIKTPGGGGFG 1282

>YAOF_SCHPO (Q10094) Hypothetical protein C11D3.15 in chromosome I|
          Length = 1317

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 8/62 (12%)
 Frame = -3

Query: 303  PRGLKGGENGARGANYLVRKD--------GRRVYLGGKNTVTVNAGEVLQILTPGGGGFG 148
            P G+KGG++   G N  +RKD         R++ +GGKNT  + AG+ + I+TPGGGG+G
Sbjct: 1224 PYGMKGGKDAECGKNIWIRKDILPSGEQRVRQINVGGKNTCHMQAGDHIVIMTPGGGGYG 1283

Query: 147  SP 142
             P
Sbjct: 1284 PP 1285

>YAOE_SCHPO (Q10093) Hypothetical protein C11D3.14c in chromosome I|
          Length = 1260

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
 Frame = -3

Query: 306  APRGLKGGENGARGANYLVRKDG----RRVYLGGKNTVTVNAGEVLQILTPGGGGFGS 145
            AP G+ GGE+GA G N  +        R V LGGKN V +  G+ + I TPGGGG+G+
Sbjct: 1200 APYGMNGGEDGAMGVNTWIDCSNPDFPRYVNLGGKNHVLMGKGDHIVIETPGGGGYGA 1257

>RPOA1_HALSA (Q9HM79) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)|
          Length = 971

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 306 APRGLKGGENGARGANYLVRKDGRRV 229
           A R ++ G  G  GANY+ R DGRRV
Sbjct: 433 ARRYVRNGPEGHPGANYVTRPDGRRV 458

>Y3058_BORPA (Q7W669) UPF0078 membrane protein BPP3058|
          Length = 215

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 157 RFRFSLMVSVIICLVFYLHRIKLAHTLSGT 68
           R    L ++VI  L+FY HR  +A  L GT
Sbjct: 178 RLEVGLAIAVISALLFYRHRANIARLLKGT 207

>Y3021_BORBR (Q7WI35) UPF0078 membrane protein BB3021|
          Length = 215

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 157 RFRFSLMVSVIICLVFYLHRIKLAHTLSGT 68
           R    L ++VI  L+FY HR  +A  L GT
Sbjct: 178 RLEVGLAIAVISALLFYRHRANIARLLKGT 207

>Y1718_BORPE (Q7VXN3) UPF0078 membrane protein BP1718|
          Length = 215

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 157 RFRFSLMVSVIICLVFYLHRIKLAHTLSGT 68
           R    L ++VI  L+FY HR  +A  L GT
Sbjct: 178 RLEVGLAIAVISALLFYRHRANIARLLKGT 207

>SYA_HALSA (Q9HN24) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 929

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 243 DGRRVYLGGKNTVTVNAGEVLQILTP--GGGGFGSP 142
           DG +  +G  + V VNAGEV+  L    GGGG G P
Sbjct: 863 DGAQFVVGVPDGVPVNAGEVVGELAAMVGGGGGGPP 898

>PURB_HUMAN (Q96QR8) Transcriptional activator protein Pur-beta (Purine-rich|
           element-binding protein B)
          Length = 311

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 288 GGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFGS 145
           GG   A  + +LVR++ R+ YL  K         + Q +  GGGGFG+
Sbjct: 112 GGPRRALKSEFLVREN-RKYYLDLKENQRGRFLRIRQTVNRGGGGFGA 158

>SM3L2_ARATH (Q9FNI6) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3-like 2 (EC
           3.6.1.-) (SMARCA3-like protein 2)
          Length = 1029

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 297 GLKG---GENGARGANYLVRKDGRRVYLGGKNTVTVN 196
           GLKG   G++G+ GAN+ V ++   V  GG+ +V+ N
Sbjct: 72  GLKGCTFGDSGSVGANHRVEEENESVNGGGEESVSGN 108

>PURB_RAT (Q68A21) Transcriptional activator protein Pur-beta (Purine-rich|
           element-binding protein B)
          Length = 314

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 288 GGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFG 148
           GG   A  + +LVR++ R+ YL  K         + Q +  GGGGFG
Sbjct: 115 GGPRRALKSEFLVREN-RKYYLDLKENQRGRFLRIRQTVNRGGGGFG 160

>O11L1_HUMAN (Q8NGX0) Olfactory receptor 11L1|
          Length = 322

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 164 VAAVSVLLDGVRNHLPCFLFTQNKACTYIIWYRSQLLSMLL 42
           V  ++V+  G+R H P ++F Q+ +    +WY S  + +LL
Sbjct: 43  VVIITVVSQGLRLHSPMYMFLQHLSFLE-VWYTSTTVPLLL 82

>PURB_MOUSE (O35295) Transcriptional activator protein Pur-beta (Purine-rich|
           element-binding protein B) (Vascular actin
           single-stranded DNA-binding factor 2 p44 component)
          Length = 323

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 288 GGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFG 148
           GG   A  + +LVR++ R+ YL  K         + Q +  GGGGFG
Sbjct: 124 GGPRRALKSEFLVREN-RKYYLDLKENQRGRFLRIRQTVNRGGGGFG 169

>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RNA polymerase II subunit 1)
          Length = 1599

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 294 LKGGENGARGANYLVRKDGRRVYLG-GKNTVTVNAGEVLQ 178
           ++ G N   GANY++R DG+++ L   ++ + +  G V++
Sbjct: 363 VRAGPNEHPGANYVLRSDGQKIDLNFNRSDIRLEEGYVVE 402

>RNC_PSEHT (Q3IDL2) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 225

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
 Frame = -1

Query: 290 REGKMELVAQTI*SGKMVAEFTLEGRI-------PSQLMLVRFFRSSLPVAAVSVLLDGV 132
           REG +  +  T+  G+ +AEF LE  +       P +L    F R S    AV  ++  V
Sbjct: 63  REGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAV 122

Query: 131 RNHLPCFLFTQNKACTYII--WYRSQL 57
                 FL +  + C  +I  WY  +L
Sbjct: 123 ------FLDSDIERCGELILSWYEERL 143

>WWP1_HUMAN (Q9H0M0) NEDD4-like E3 ubiquitin-protein ligase WWP1 (EC 6.3.2.-)|
           (WW domain-containing protein 1) (Atropin-1-interacting
           protein 5) (AIP5)
          Length = 922

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 140 DGVRNHLPCFLFTQNKACTYII 75
           +G+ NH+P     QN  C+Y++
Sbjct: 187 NGIDNHVPTSTLVQNSCCSYVV 208

>MYC_CARAU (P49709) Myc protein (c-myc)|
          Length = 399

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 110 ENKADDYGHHQ-GEPKPPPPGVRI*RTSPALTVTVFFPPR 226
           +N  +D+ HHQ G+P+PP P   I +    L      P R
Sbjct: 26  DNDDEDFYHHQQGQPQPPAPSEDIWKKFELLPTPPLSPSR 65

>EGR4_RAT (Q00911) Early growth response protein 4 (EGR-4) (Early response|
           protein NGFI-C) (Nerve growth factor-induced protein C)
           (NGFI-C)
          Length = 478

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 303 PRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQILTPGGGGFGSP 142
           P G +GG +G  G  +L     +   LG +   T +  + L    PGG G  +P
Sbjct: 284 PPGGEGG-SGGEGGEFLAVPQAQLSPLGLRGAATADFSKALVADLPGGSGVAAP 336

>PHR_SYNY3 (Q55081) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 488

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 256 SSQERWSQSLPWREEYRH 203
           +S E W Q L WRE Y+H
Sbjct: 289 ASIETWQQELAWREFYQH 306

>SNX9_HUMAN (Q9Y5X1) Sorting nexin-9 (SH3 and PX domain-containing protein 1)|
           (SDP1 protein)
          Length = 595

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 219 GKNTVTVNAGEVLQILTPGGGG 154
           G N +TVN GE++ I  P  GG
Sbjct: 16  GNNELTVNEGEIITITNPDVGG 37

>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui|
          Length = 677

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +2

Query: 113 NKADDYGHHQGEPK----PPPPGVRI*RTSPALTVTVFFPP 223
           NK+ D+G H GE K    PPPP   + R         F PP
Sbjct: 219 NKSVDHGTHFGEAKPQYVPPPPPPHVDRDQYFADDVNFHPP 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,950,413
Number of Sequences: 219361
Number of extensions: 991120
Number of successful extensions: 3340
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3324
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)